Pregenerated sensors for MUP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078689Ensembl transcript IDs: ENSMUST00000107517.8, ENSMUST00000107520.2, ENSMUST00000107521.8
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACGATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGATTCTGGAGTCCTGGTaGGAATTCTCCACTAAACAC | + |
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Preference number: 2 (lower is better) Translates to: TMKGRSQKLVTGCCMDSKILESW*EFSTKH Trigger: GTGTTTAGTGGAGAATTCTCACCAGGACTCCAGAAT...CTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCATCGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| 3UTR TCA 72 bp | GGAGAAACCAGGATTGCACTTCTCTGTGAGACACGATaGAAGGCAGATCTCAGAAACTTGTCACAGGATGCT | + |
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Preference number: 3 (lower is better) Translates to: GETRIALLCETR*KADLRNLSQDA Trigger: AGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCATCGTGTCTCACAGAGAAGTGCAATCCTGGTTTCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107517.8 |
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| 3UTR TCA 72 bp | GTAACATGCTGGAGAAACCAGGATTGCACTTCTCTGTaGGACACGATGAAAGGCAGATCTCAGAAACTTGTC | + |
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Preference number: 3 (lower is better) Translates to: VTCWRNQDCTSL*DTMKGRSQKLV Trigger: GACAAGTTTCTGAGATCTGCCTTTCATCGTGTCTCACAGAGAAGTGCAATCCTGGTTTCTCCAGCATGTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107517.8 |
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| 3UTR TCA 72 bp | AAACTTGTCACAGGATGCTGTATGGATAGTAAGGGATaGTTCTGGAGTCCTGGTGAGAATTCTCCACTAAAC | + |
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Preference number: 3 (lower is better) Translates to: KLVTGCCMDSKG*FWSPGENSPLN Trigger: GTTTAGTGGAGAATTCTCACCAGGACTCCAGAATCATCCCTTACTATCCATACAGCATCCTGTGACAAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR CCA 90 bp | ATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGGGAACATTCTGTTTTCTGTaGAGCCCCACCAAGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: MKGRSQKLVTGCCMDSKGTFCFL*SPTKTV Trigger: CACTGTCTTGGTGGGGCTCCACAGAAAACAGAATGT...TCCCTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107521.8 |
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| CDS-3UTR CCA 90 bp | ATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGGGACTAGCTTCTTCTGCATaGACACAGACTAGGATCAGT | + |
|
Preference number: 4 (lower is better) Translates to: MKGRSQKLVTGCCMDSKGLASSA*TQTRIS Trigger: ACTGATCCTAGTCTGTGTCCATGCAGAAGAAGCTAG...TCCCTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107517.8 |
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| CDS-3UTR TCA 90 bp | AAACCAGGATTGCACTTCTCTGTGAGACACGATGAAAGGCAGATCTCAGAAACTCCACAAAAAGTCTCATaGTGCCATGTTCTTCTATCT | + |
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Preference number: 4 (lower is better) Translates to: KPGLHFSVRHDERQISETPQKVS*CHVLLS Trigger: AGATAGAAGAACATGGCATCATGAGACTTTTTGTGG...AGTTTCTGAGATCTGCCTTTCATCGTGTCTCACAGAGAAGTGCAATCCTGGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107517.8 |
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| CDS-3UTR GCA 90 bp | GACACGATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTATGTTCTTCTATCTTTaGTCTTTTGTCAGAGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: DTMKGRSQKLVTGCCMDSMFFYL*SFVRGQ Trigger: CTGGCCTCTGACAAAAGAGCAAAGATAGAAGAACAT...ACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCATCGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR TCA 90 bp | ATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGGGACCACAAAAAGTCTCATaGTGCCATGTTCTTCTATCT | + |
|
Preference number: 4 (lower is better) Translates to: MKGRSQKLVTGCCMDSKGPQKVS*CHVLLS Trigger: AGATAGAAGAACATGGCATCATGAGACTTTTTGTGG...TCCCTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS CCA 90 bp | TTTTCTACATTAAAGTTCCTTCCCATAGAACTAGCTTCTTCTGCATaGACACAGACTAGGATCAGTCCCAAACACAGCAGCAGCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: FSTLKFLPIELASSA*TQTRISPKHSSSSF Trigger: GAAGCTGCTGCTGCTGTGTTTGGGACTGATCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTATGGGAAGGAACTTTAATGTAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 |
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| CDS-3UTR CAA 90 bp | GACACGATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTCATGTTCTTCTATCTTaGCTCTTTTGTCAGAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: DTMKGRSQKLVTGCCMDSHVLLS*LFCQRP Trigger: TGGCCTCTGACAAAAGAGCAAAGATAGAAGAACATG...ACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCATCGTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR CAA 90 bp | GACACGATGAAAGGCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTTCTATCTTTGCTCTTTaGTCAGAGGCCAGGATAATA | + |
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Preference number: 5 (lower is better) Translates to: DTMKGRSQKLVTGCCMDSSIFAL*SEARII Trigger: TATTATCCTGGCCTCTGACAAAAGAGCAAAGATAGA...ACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGCCTTTCATCGTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR CAA 90 bp | GCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGGGATGATTCTTCTATCTTTGCTCTTTaGTCAGAGGCCAGGATAATA | + |
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Preference number: 5 (lower is better) Translates to: ADLRNLSQDAVWIVRDDSSIFAL*SEARII Trigger: TATTATCCTGGCCTCTGACAAAAGAGCAAAGATAGA...AGAATCATCCCTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR CAA 90 bp | GCAGATCTCAGAAACTTGTCACAGGATGCTGTATGGATAGTAAGGGATGATTCTCCAGCCTTTTCTGTTTaGTCAGCAACCAAAAATATT | + |
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Preference number: 5 (lower is better) Translates to: ADLRNLSQDAVWIVRDDSPAFSV*SATKNI Trigger: AATATTTTTGGTTGCTGACAAAACAGAAAAGGCTGG...AGAATCATCCCTTACTATCCATACAGCATCCTGTGACAAGTTTCTGAGATCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107521.8 |
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| CDS-3UTR CAA 90 bp | AGGAAAAAGAAGAAATTCAAGGAGAATAGTCATGGGTGTGCCAAAGAGAAATTTCATGTTCTTCTATCTTaGCTCTTTTGTCAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RKKKKFKENSHGCAKEKFHVLLS*LFCQRP Trigger: TGGCCTCTGACAAAAGAGCAAAGATAGAAGAACATG...AAATTTCTCTTTGGCACACCCATGACTATTCTCCTTGAATTTCTTCTTTTTCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107517.8 |
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| CDS TCA 90 bp | TCTATAACAGTATGGAATTTAAAACCTAAGGAATTCTCCAAGACATaGATGTGCTCCACAAAAAGTCTCATGATGCCATGTTCTTCTATC | + |
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Preference number: 5 (lower is better) Translates to: SITVWNLKPKEFSKT*MCSTKSLMMPCSSI Trigger: GATAGAAGAACATGGCATCATGAGACTTTTTGTGGAGCACATTCATGTCTTGGAGAATTCCTTAGGTTTTAAATTCCATACTGTTATAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 ENSMUST00000107521.8 |
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| CDS CCA 72 bp | CCATTAATCATACAGGATACCACATTCTGTTTTCTGTaGAGCCCCACCAAGACAGTGTCCTCAGTCGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PLIIQDTTFCFL*SPTKTVSSVGL Trigger: AAGACCGACTGAGGACACTGTCTTGGTGGGGCTCCACAGAAAACAGAATGTGGTATCCTGTATGATTAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107521.8 |
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| CDS CAA 72 bp | AGTCTCATGATGCCATGTTCTTCTATCTTTGCTCTTTaGTCAGAGGCCAGGATAATAGTATACCACTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: SLMMPCSSIFAL*SEARIIVYHSP Trigger: TGGGGAGTGGTATACTATTATCCTGGCCTCTGACAAAAGAGCAAAGATAGAAGAACATGGCATCATGAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 ENSMUST00000107521.8 |
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| CDS CAA 90 bp | TCCACAAAAAGTCTCATGATGCCATGTTCTTCTATCTTTGCTCTTTaGTCAGAGGCCAGGATAATAGTATACCACTCCCCATTAATCATA | + |
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Preference number: 6 (lower is better) Translates to: STKSLMMPCSSIFAL*SEARIIVYHSPLII Trigger: TATGATTAATGGGGAGTGGTATACTATTATCCTGGCCTCTGACAAAAGAGCAAAGATAGAAGAACATGGCATCATGAGACTTTTTGTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107521.8 |
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| CDS CAA 90 bp | TCCACAAAAAGTCTCATGATGCCATGTTCTTCTATCTTTGCTCTTTaGTCAGAGGCCAGGATAATAGTATACCACTCCCCATTAATCTTT | + |
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Preference number: 6 (lower is better) Translates to: STKSLMMPCSSIFAL*SEARIIVYHSPLIF Trigger: AAAGATTAATGGGGAGTGGTATACTATTATCCTGGCCTCTGACAAAAGAGCAAAGATAGAAGAACATGGCATCATGAGACTTTTTGTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 |
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| CDS TCA 72 bp | GTATGGAATTTAAAACCTAAGGAATTCTCCAAGACATaGATGTGCTCCACAAAAAGTCTCATGATGCCATGT | + |
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Preference number: 6 (lower is better) Translates to: VWNLKPKEFSKT*MCSTKSLMMPC Trigger: ACATGGCATCATGAGACTTTTTGTGGAGCACATTCATGTCTTGGAGAATTCCTTAGGTTTTAAATTCCATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 ENSMUST00000107521.8 |
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| CDS CAA 72 bp | TCATATGTCACAGAATATTCACCAGCCTTTTCTGTTTaGTCAGCAACCAAAAATATTTCGGAGCACTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SYVTEYSPAFSV*SATKNISEHSS Trigger: TGAAGAGTGCTCCGAAATATTTTTGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACATATGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 ENSMUST00000107521.8 |
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| CDS CAA 90 bp | TTGAATCCATCATATGTCACAGAATATTCACCAGCCTTTTCTGTTTaGTCAGCAACCAAAAATATTTCGGAGCACTCTTCATCTATAACA | + |
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Preference number: 6 (lower is better) Translates to: LNPSYVTEYSPAFSV*SATKNISEHSSSIT Trigger: TGTTATAGATGAAGAGTGCTCCGAAATATTTTTGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACATATGATGGATTCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107517.8 ENSMUST00000107520.2 ENSMUST00000107521.8 |
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