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Pregenerated sensors for MUP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058523

Ensembl transcript IDs: ENSMUST00000082287.3

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGACATGATGGAAGCAGATCACAGAACTTGTCACCCCATGCTGTATaGAAGGGAAGGGATGATGCTGGAGTCCTGGTGAGAAGTCTCCAC +
Preference number: 1 (lower is better)
Translates to: RHDGSRSQNLSPHAV*KGRDDAGVLVRSLH
Trigger: GTGGAGACTTCTCACCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
3UTR CAA 90 bp GGATTGGACCTGTCTGTGAGACATGATGGAAGCAGATCACAGAACTaGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTC +
Preference number: 2 (lower is better)
Translates to: GLDLSVRHDGSRSQN*SPHAVWKGRDDAGV
Trigger: GACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
3UTR TCA 72 bp GCTGGAGAGACCAGGATTGGACCTGTCTGTGAGACATaGTGGAAGCAGATCACAGAACTTGTCACCCCATGC +
Preference number: 3 (lower is better)
Translates to: AGETRIGPVCET*WKQITELVTPC
Trigger: GCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCCTGGTCTCTCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
3UTR CCA 72 bp GGAAGCAGATCACAGAACTTGTCACCCCATGCTGTATaGAAGGGAAGGGATGATGCTGGAGTCCTGGTGAGA +
Preference number: 3 (lower is better)
Translates to: GSRSQNLSPHAV*KGRDDAGVLVR
Trigger: TCTCACCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
3UTR TCA 72 bp GTAACATGCTGGAGAGACCAGGATTGGACCTGTCTGTaGGACATGATGGAAGCAGATCACAGAACTTGTCAC +
Preference number: 3 (lower is better)
Translates to: VTCWRDQDWTCL*DMMEADHRTCH
Trigger: GTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCCTGGTCTCTCCAGCATGTTAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS-3UTR CCA 90 bp CACAGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTCCCCACAAAAACTCTCATaGTGCCATGTTCTTCTATCT +
Preference number: 4 (lower is better)
Translates to: HRTCHPMLYGREGMMLESPQKLS*CHVLLS
Trigger: AGATAGAAGAACATGGCACCATGAGAGTTTTTGTGG...GGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS-3UTR TCA 90 bp GCAGATCACAGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGTTGCAAACTTTTCCTTaGTGTCTGAACTCAAATCTG +
Preference number: 4 (lower is better)
Translates to: ADHRTCHPMLYGREGMMLLQTFP*CLNSNL
Trigger: CAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAA...CAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS-3UTR GCA 90 bp AGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTCCTGGCAAAAACTCTCATGGTaGCATGTTCTTCTATCTTTT +
Preference number: 4 (lower is better)
Translates to: RTCHPMLYGREGMMLESWQKLSW*HVLLSF
Trigger: AAAAGATAGAAGAACATGGCACCATGAGAGTTTTTG...CCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS CCA 90 bp TCAGCAACCAAATATATTTCAGTGCACTCTTCATCTATAACAGTATaGAATTTAAAAGCTAAGGAATTCTCCAAGACATCGATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: SATKYISVHSSSITV*NLKAKEFSKTSMCS
Trigger: GGAGCACATCGATGTCTTGGAGAATTCCTTAGCTTTTAAATTCCATACTGTTATAGATGAAGAGTGCACTGAAATATATTTGGTTGCTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS TCA 72 bp TTCCATGCTCCTCACATAGTTTTGCAAACTTTTCCTTaGTGTCTGAACTCAAATCTGGTTCTCGACCAAAGA +
Preference number: 6 (lower is better)
Translates to: FHAPHIVLQTFP*CLNSNLVLDQR
Trigger: TCTTTGGTCGAGAACCAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAAAACTATGTGAGGAGCATGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3
CDS GCA 72 bp AATTTAAAAGCTAAGGAATTCTCCAAGACATCGATGTaGTCCACAAAAACTCTCATGGTGCCATGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: NLKAKEFSKTSM*STKTLMVPCSS
Trigger: AGAAGAACATGGCACCATGAGAGTTTTTGTGGAGCACATCGATGTCTTGGAGAATTCCTTAGCTTTTAAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000082287.3