Pregenerated sensors for MUP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058523Ensembl transcript IDs: ENSMUST00000082287.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | AGACATGATGGAAGCAGATCACAGAACTTGTCACCCCATGCTGTATaGAAGGGAAGGGATGATGCTGGAGTCCTGGTGAGAAGTCTCCAC | + |
Preference number: 1 (lower is better) Translates to: RHDGSRSQNLSPHAV*KGRDDAGVLVRSLH Trigger: GTGGAGACTTCTCACCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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3UTR CAA 90 bp | GGATTGGACCTGTCTGTGAGACATGATGGAAGCAGATCACAGAACTaGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTC | + |
Preference number: 2 (lower is better) Translates to: GLDLSVRHDGSRSQN*SPHAVWKGRDDAGV Trigger: GACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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3UTR TCA 72 bp | GCTGGAGAGACCAGGATTGGACCTGTCTGTGAGACATaGTGGAAGCAGATCACAGAACTTGTCACCCCATGC | + |
Preference number: 3 (lower is better) Translates to: AGETRIGPVCET*WKQITELVTPC Trigger: GCATGGGGTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCCTGGTCTCTCCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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3UTR CCA 72 bp | GGAAGCAGATCACAGAACTTGTCACCCCATGCTGTATaGAAGGGAAGGGATGATGCTGGAGTCCTGGTGAGA | + |
Preference number: 3 (lower is better) Translates to: GSRSQNLSPHAV*KGRDDAGVLVR Trigger: TCTCACCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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3UTR TCA 72 bp | GTAACATGCTGGAGAGACCAGGATTGGACCTGTCTGTaGGACATGATGGAAGCAGATCACAGAACTTGTCAC | + |
Preference number: 3 (lower is better) Translates to: VTCWRDQDWTCL*DMMEADHRTCH Trigger: GTGACAAGTTCTGTGATCTGCTTCCATCATGTCTCACAGACAGGTCCAATCCTGGTCTCTCCAGCATGTTAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS-3UTR CCA 90 bp | CACAGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTCCCCACAAAAACTCTCATaGTGCCATGTTCTTCTATCT | + |
Preference number: 4 (lower is better) Translates to: HRTCHPMLYGREGMMLESPQKLS*CHVLLS Trigger: AGATAGAAGAACATGGCACCATGAGAGTTTTTGTGG...GGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS-3UTR TCA 90 bp | GCAGATCACAGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGTTGCAAACTTTTCCTTaGTGTCTGAACTCAAATCTG | + |
Preference number: 4 (lower is better) Translates to: ADHRTCHPMLYGREGMMLLQTFP*CLNSNL Trigger: CAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAA...CAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCTGTGATCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS-3UTR GCA 90 bp | AGAACTTGTCACCCCATGCTGTATGGAAGGGAAGGGATGATGCTGGAGTCCTGGCAAAAACTCTCATGGTaGCATGTTCTTCTATCTTTT | + |
Preference number: 4 (lower is better) Translates to: RTCHPMLYGREGMMLESWQKLSW*HVLLSF Trigger: AAAAGATAGAAGAACATGGCACCATGAGAGTTTTTG...CCAGGACTCCAGCATCATCCCTTCCCTTCCATACAGCATGGGGTGACAAGTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS CCA 90 bp | TCAGCAACCAAATATATTTCAGTGCACTCTTCATCTATAACAGTATaGAATTTAAAAGCTAAGGAATTCTCCAAGACATCGATGTGCTCC | + |
Preference number: 5 (lower is better) Translates to: SATKYISVHSSSITV*NLKAKEFSKTSMCS Trigger: GGAGCACATCGATGTCTTGGAGAATTCCTTAGCTTTTAAATTCCATACTGTTATAGATGAAGAGTGCACTGAAATATATTTGGTTGCTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS TCA 72 bp | TTCCATGCTCCTCACATAGTTTTGCAAACTTTTCCTTaGTGTCTGAACTCAAATCTGGTTCTCGACCAAAGA | + |
Preference number: 6 (lower is better) Translates to: FHAPHIVLQTFP*CLNSNLVLDQR Trigger: TCTTTGGTCGAGAACCAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAAAACTATGTGAGGAGCATGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |
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CDS GCA 72 bp | AATTTAAAAGCTAAGGAATTCTCCAAGACATCGATGTaGTCCACAAAAACTCTCATGGTGCCATGTTCTTCT | + |
Preference number: 6 (lower is better) Translates to: NLKAKEFSKTSM*STKTLMVPCSS Trigger: AGAAGAACATGGCACCATGAGAGTTTTTGTGGAGCACATCGATGTCTTGGAGAATTCCTTAGCTTTTAAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082287.3 |