Pregenerated sensors for MUP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041333Ensembl transcript IDs: ENSMUST00000075973.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATCACAGAACTTGTCACCCAATGCTGTATCGATCGGAAGAGAGGATaGTGGAGTCCTGGTGAGAAGTCTCCACTCAACACTGGAGGCTCA | + |
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Preference number: 1 (lower is better) Translates to: ITELVTQCCIDRKRG*WSPGEKSPLNTGGS Trigger: TGAGCCTCCAGTGTTGAGTGGAGACTTCTCACCAGGACTCCAGCATCCTCTCTTCCGATCGATACAGCATTGGGTGACAAGTTCTGTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| 3UTR GCA 90 bp | TCTGTGAGACAGGATGGAAAGCAGATCACAGAACTTGTCACCCAATaGTGTATCGATCGGAAGAGAGGATGCTGGAGTCCTGGTGAGAAG | + |
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Preference number: 1 (lower is better) Translates to: SVRQDGKQITELVTQ*CIDRKRGCWSPGEK Trigger: CTTCTCACCAGGACTCCAGCATCCTCTCTTCCGATCGATACAGCATTGGGTGACAAGTTCTGTGATCTGCTTTCCATCCTGTCTCACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| 3UTR-3UTR CCA 90 bp | AGACCAGGATTGCACTTCTCTGTGAGACAGGATGGAAAGCAGATCACAGAACTTCGGAAGAGAGGATGCTaGAGTCCTGGTGAGAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: RPGLHFSVRQDGKQITELRKRGC*SPGEKS Trigger: AGACTTCTCACCAGGACTCCAGCATCCTCTCTTCCG...AAGTTCTGTGATCTGCTTTCCATCCTGTCTCACAGAGAAGTGCAATCCTGGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| 3UTR TCA 72 bp | CTGTATCGATCGGAAGAGAGGATGCTGGAGTCCTGGTaGGAAGTCTCCACTCAACACTGGAGGCTCAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: LYRSEERMLESW*EVSTQHWRLRP Trigger: TGGCCTGAGCCTCCAGTGTTGAGTGGAGACTTCTCACCAGGACTCCAGCATCCTCTCTTCCGATCGATACAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| 3UTR GCA 72 bp | CAGGATGGAAAGCAGATCACAGAACTTGTCACCCAATaGTGTATCGATCGGAAGAGAGGATGCTGGAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: QDGKQITELVTQ*CIDRKRGCWSP Trigger: AGGACTCCAGCATCCTCTCTTCCGATCGATACAGCATTGGGTGACAAGTTCTGTGATCTGCTTTCCATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| CDS-3UTR GCA 90 bp | GCAGATCACAGAACTTGTCACCCAATGCTGTATCGATCGGAAGAGAGGATGCTGCCACAAAAACTCTCATaGTGCCATGTTCTTCTATCT | + |
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Preference number: 4 (lower is better) Translates to: ADHRTCHPMLYRSEERMLPQKLS*CHVLLS Trigger: AGATAGAAGAACATGGCAGCATGAGAGTTTTTGTGG...CAGCATCCTCTCTTCCGATCGATACAGCATTGGGTGACAAGTTCTGTGATCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| CDS-3UTR TCA 90 bp | GAGACCAGGATTGCACTTCTCTGTGAGACAGGATGGAAAGCAGATCACAGAACTCTTTTCCTTGATGTCTaGATTCAAATCTGCTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: ETRIALLCETGWKADHRTLFLDV*IQICFS Trigger: CGAAAAGCAGATTTGAATTCAGACATCAAGGAAAAG...AGTTCTGTGATCTGCTTTCCATCCTGTCTCACAGAGAAGTGCAATCCTGGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| CDS-3UTR CAA 90 bp | GGAGAGACCAGGATTGCACTTCTCTGTGAGACAGGATGGAAAGCAGATCACAGACCAGCCTTCTCTGTTTaGTCAGCAACCAAAAATATT | + |
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Preference number: 5 (lower is better) Translates to: GETRIALLCETGWKADHRPAFSV*SATKNI Trigger: AATATTTTTGGTTGCTGACAAAACAGAGAAGGCTGG...TCTGTGATCTGCTTTCCATCCTGTCTCACAGAGAAGTGCAATCCTGGTCTCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| CDS-3UTR CAA 90 bp | GAGACCAGGATTGCACTTCTCTGTGAGACAGGATGGAAAGCAGATCACAGAACTTCTATCTTTTCTCTTTaGTCAGAGGCCAGGAGAATA | + |
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Preference number: 5 (lower is better) Translates to: ETRIALLCETGWKADHRTSIFSL*SEARRI Trigger: TATTCTCCTGGCCTCTGACAAAAGAGAAAAGATAGA...AGTTCTGTGATCTGCTTTCCATCCTGTCTCACAGAGAAGTGCAATCCTGGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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| CDS CAA 72 bp | TCATACATCACAGAATATTCACCAGCCTTCTCTGTTTaGTCAGCAACCAAAAATATTTCAGAGCACTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SYITEYSPAFSV*SATKNISEHSP Trigger: TGGAGAGTGCTCTGAAATATTTTTGGTTGCTGACAAAACAGAGAAGGCTGGTGAATATTCTGTGATGTATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075973.3 |
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