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Pregenerated sensors for MUP20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078672

Ensembl transcript IDs: ENSMUST00000074018.4

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGAATTGTCATGGGTATGTCAAAGAGAAATTTAAAGAAAGACTTTaGTTCTTGATGAGTTATCCTAGTAACATGCTGGAGAGACAGGGA +
Preference number: 1 (lower is better)
Translates to: ENCHGYVKEKFKERL*FLMSYPSNMLERQG
Trigger: TCCCTGTCTCTCCAGCATGTTACTAGGATAACTCATCAAGAATCAAAGTCTTTCTTTAAATTTCTCTTTGACATACCCATGACAATTCTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
3UTR TCA 72 bp GAACTTCTTACTGGATGCTGTATGGATAGGAAGGACTaGTCCTGGAGTCCTGGTGAGAAGTCTCCACTCAAC +
Preference number: 3 (lower is better)
Translates to: ELLTGCCMDRKD*SWSPGEKSPLN
Trigger: GTTGAGTGGAGACTTCTCACCAGGACTCCAGGATCAGTCCTTCCTATCCATACAGCATCCAGTAAGAAGTTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
3UTR CCA 72 bp GGAGAGACAGGGATTGCACTTCTCTGTAAGACACGATaGAAAGCAGATCACAGAACTTCTTACTGGATGCTG +
Preference number: 3 (lower is better)
Translates to: GETGIALLCKTR*KADHRTSYWML
Trigger: CAGCATCCAGTAAGAAGTTCTGTGATCTGCTTTCCATCGTGTCTTACAGAGAAGTGCAATCCCTGTCTCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR TCA 90 bp ATAGGAAGGACTGATCCTGGAGTCCTGGTGAGAAGTCTCCACTCAACACTGGAGGTGCAAACTTTTCCTTaGTGTCTGAACTCAAATCTG +
Preference number: 4 (lower is better)
Translates to: IGRTDPGVLVRSLHSTLEVQTFP*CLNSNL
Trigger: CAGATTTGAGTTCAGACATCAAGGAAAAGTTTGCAC...CTCCAGTGTTGAGTGGAGACTTCTCACCAGGACTCCAGGATCAGTCCTTCCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR TCA 90 bp GGAGAGACAGGGATTGCACTTCTCTGTAAGACACGATGGAAAGCAGATCACAGACTTTTCCTTGATGTCTaGACTCAAATCTGGTTCTCG +
Preference number: 4 (lower is better)
Translates to: GETGIALLCKTRWKADHRLFLDV*TQIWFS
Trigger: CGAGAACCAGATTTGAGTTCAGACATCAAGGAAAAG...TCTGTGATCTGCTTTCCATCGTGTCTTACAGAGAAGTGCAATCCCTGTCTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR CCA 90 bp GGAGAGACAGGGATTGCACTTCTCTGTAAGACACGATGGAAAGCAGATCACAGAGAATTCTCCAAGACATaGATGTACTCGACAAAAACT +
Preference number: 4 (lower is better)
Translates to: GETGIALLCKTRWKADHREFSKT*MYSTKT
Trigger: AGTTTTTGTCGAGTACATCCATGTCTTGGAGAATTC...TCTGTGATCTGCTTTCCATCGTGTCTTACAGAGAAGTGCAATCCCTGTCTCTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR GCA 90 bp AGATCACAGAACTTCTTACTGGATGCTGTATGGATAGGAAGGACTGATCCTGGACGACAAAAACTCTCATaGTGCCATGTTCTTCTATCT +
Preference number: 4 (lower is better)
Translates to: RSQNFLLDAVWIGRTDPGRQKLS*CHVLLS
Trigger: AGATAGAAGAACATGGCAGCATGAGAGTTTTTGTCG...TCCAGGATCAGTCCTTCCTATCCATACAGCATCCAGTAAGAAGTTCTGTGATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR GCA 90 bp GGAAGAGGAAGAAATTCATGGAGAATTGTCATGGGTATGTCAAAGAGAAATTTACAAAAACTCTCATGCTaGCATGTTCTTCTATCTTTT +
Preference number: 4 (lower is better)
Translates to: GRGRNSWRIVMGMSKRNLQKLSC*HVLLSF
Trigger: AAAAGATAGAAGAACATGGCAGCATGAGAGTTTTTG...TAAATTTCTCTTTGACATACCCATGACAATTCTCCATGAATTTCTTCCTCTTCC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS-3UTR CAA 90 bp GTATGGATAGGAAGGACTGATCCTGGAGTCCTGGTGAGAAGTCTCCACTCAACATCTATCTTTTCTCTTTaGTCAGTGGCCAGCATAATA +
Preference number: 5 (lower is better)
Translates to: VWIGRTDPGVLVRSLHSTSIFSL*SVASII
Trigger: TATTATGCTGGCCACTGACAAAAGAGAAAAGATAGA...TGTTGAGTGGAGACTTCTCACCAGGACTCCAGGATCAGTCCTTCCTATCCATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS CCA 72 bp ATATGGAATTTAAGAGCTAAGGAATTCTCCAAGACATaGATGTACTCGACAAAAACTCTCATGCTGCCATGT +
Preference number: 6 (lower is better)
Translates to: IWNLRAKEFSKT*MYSTKTLMLPC
Trigger: ACATGGCAGCATGAGAGTTTTTGTCGAGTACATCCATGTCTTGGAGAATTCCTTAGCTCTTAAATTCCATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4
CDS CAA 72 bp TCATACGTTACAGAATATTCACCAGCCTTTTCTGTTTaGTCAGCAACCAAAAATATTTCAGAGCACTCCTCA +
Preference number: 6 (lower is better)
Translates to: SYVTEYSPAFSV*SATKNISEHSS
Trigger: TGAGGAGTGCTCTGAAATATTTTTGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTAACGTATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074018.4