Pregenerated sensors for MUP19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078673

Ensembl transcript IDs: ENSMUST00000080606.9, ENSMUST00000107477.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTCCTCACATAGTTGTGCAAACCTTTCCTTGATGTCTGAACTC	+
Preference number: 5 (lower is better) Translates to: RLALDRSMIFSLRIP*SSHSCANLSLMSEL Trigger: GAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCAATCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080606.9
CDS GCA 90 bp	TTACTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTCCTCACATAGTTGTGCAAACCTTTCCTTGATGTCTGAACTC	+
Preference number: 5 (lower is better) Translates to: LLALDRSMIFSLRIP*SSHSCANLSLMSEL Trigger: GAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107477.2
CDS-3UTR CAA 90 bp	AATAAGGATAGGACTCTCCAGCATTCAAAAATGACTGGTAGCCAACTAGGTTTGCCTGACTTACTGGCATaGGATAGGTCAATGATATTT	+
Preference number: 5 (lower is better) Translates to: NKDRTLQHSKMTGSQLGLPDLLA*DRSMIF Trigger: AAATATCATTGACCTATCCAATGCCAGTAAGTCAGG...CAAACCTAGTTGGCTACCAGTCATTTTTGAATGCTGGAGAGTCCTATCCTTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107477.2
CDS CCA 72 bp	ATAGATAATTCGGAGCACTCTTCATCTCTTACAGTATaGAATTTAAGAACTAAGGAATTCTCCAAGACATGG	+
Preference number: 6 (lower is better) Translates to: IDNSEHSSSLTV*NLRTKEFSKTW Trigger: CCATGTCTTGGAGAATTCCTTAGTTCTTAAATTCCATACTGTAAGAGATGAAGAGTGCTCCGAATTATCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080606.9 ENSMUST00000107477.2
CDS CCA 72 bp	GTATGGAATTTAAGAACTAAGGAATTCTCCAAGACATaGATTTGCTCCAGAAAAAGTCTAAAGTTGCCATTA	+
Preference number: 6 (lower is better) Translates to: VWNLRTKEFSKT*ICSRKSLKLPL Trigger: TAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTAGTTCTTAAATTCCATAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080606.9 ENSMUST00000107477.2

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