Pregenerated sensors for MUP17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096688

Ensembl transcript IDs: ENSMUST00000107484.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	ACAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATaGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTGTCCAC	+
Preference number: 1 (lower is better) Translates to: TGWNADHRIYTGDAV*IGRDDGGVLVRSVH Trigger: GTGGACACTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATACAGCATCCCCAGTATAAATTCTGTGATCTGCATTCCATCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
3UTR TCA 90 bp	GGTATCCTAGGTAACATGTTGATAGACTGGAATTGGACTTCTCAGTaGGACAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGC	+
Preference number: 1 (lower is better) Translates to: GILGNMLIDWNWTSQ*DRMECRSQNLYWGC Trigger: GCATCCCCAGTATAAATTCTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAATTCCAGTCTATCAACATGTTACCTAGGATACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
3UTR TCA 72 bp	AATTTATACTGGGGATGCTGTATGGATAGGAAGGGATaGTGGTGGAGTCCTGGTGAGAAGTGTCCACTCAAC	+
Preference number: 3 (lower is better) Translates to: NLYWGCCMDRKG*WWSPGEKCPLN Trigger: GTTGAGTGGACACTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATACAGCATCCCCAGTATAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
3UTR TCA 72 bp	GGTAACATGTTGATAGACTGGAATTGGACTTCTCAGTaGGACAGGATGGAATGCAGATCACAGAATTTATAC	+
Preference number: 3 (lower is better) Translates to: GNMLIDWNWTSQ*DRMECRSQNLY Trigger: GTATAAATTCTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAATTCCAGTCTATCAACATGTTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
CDS-3UTR GCA 90 bp	GTATGGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTGTCCACTCAACATCCAAGACATGGATTTaGTCCAGAAAAAGTCTAAAG	+
Preference number: 4 (lower is better) Translates to: VWIGRDDGGVLVRSVHSTSKTWI*SRKSLK Trigger: CTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGA...TGTTGAGTGGACACTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
CDS CCA 90 bp	TTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATaGACACAGACTAGGGTCAGTCCCAAACACAGCAGCAGCAGCATC	+
Preference number: 5 (lower is better) Translates to: FSTLKFLPVELASSA*TQTRVSPKHSSSSI Trigger: GATGCTGCTGCTGCTGTGTTTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTTTAATGTAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
CDS TCA 72 bp	TTCCATGCTCCTCACATAGTTGTGCAAACCTTTCCTTaGTGTCTGAACTCAAATCTGGTTCTCGGCCATAGA	+
Preference number: 6 (lower is better) Translates to: FHAPHIVVQTFP*CLNSNLVLGHR Trigger: TCTATGGCCGAGAACCAGATTTGAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107484.2
CDS CAA 72 bp	TCATACGTCACAGAATATTCACCAGCCTTTTCTGTTTaGTCAGCAACCATAGATAATTCGGAGCACTCTTCA	+
Preference number: 6 (lower is better) Translates to: SYVTEYSPAFSV*SATIDNSEHSS Trigger: TGAAGAGTGCTCCGAATTATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACGTATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107484.2