Pregenerated sensors for MUP16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078675Ensembl transcript IDs: ENSMUST00000095051.6, ENSMUST00000107483.8
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGGATGGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATaGATAGGAAGGGATGATGGTGGAGTCCTGGTGAGAAGTCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: TGWNADHRIYTGDAV*IGRDDGGVLVRSLH Trigger: GTGGAGACTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATACAGCATCCCCAGTATAAATTCTGTGATCTGCATTCCATCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107483.8 |
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| 3UTR CCA 90 bp | GTAACATGTGGATATACTGGTATTGGACTTCTCAGTGAGACAGGATaGAATGCAGATCACAGAATTTATACTGGGGATGCTGTATGGATA | + |
|
Preference number: 1 (lower is better) Translates to: VTCGYTGIGLLSETG*NADHRIYTGDAVWI Trigger: TATCCATACAGCATCCCCAGTATAAATTCTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAATACCAGTATATCCACATGTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107483.8 |
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| 3UTR GCA 72 bp | TGGGAAGGGCCTCTCCATGTCGACCAACCCCCTCCTTaGTCTCTTTGGATATTGCCCACCTGGAGGCTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: WEGPLHVDQPPP*SLWILPTWRLR Trigger: CCTGAGCCTCCAGGTGGGCAATATCCAAAGAGAGCAAGGAGGGGGTTGGTCGACATGGAGAGGCCCTTCCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095051.6 |
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| 3UTR TCA 72 bp | AATTTATACTGGGGATGCTGTATGGATAGGAAGGGATaGTGGTGGAGTCCTGGTGAGAAGTCTCCACTCAAC | + |
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Preference number: 3 (lower is better) Translates to: NLYWGCCMDRKG*WWSPGEKSPLN Trigger: GTTGAGTGGAGACTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATACAGCATCCCCAGTATAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107483.8 |
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