Pregenerated sensors for MUP13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000089873

Ensembl transcript IDs: ENSMUST00000072678.6, ENSMUST00000098042.10

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GGTAACATGTGGATAGACTGGAATTGGACTTCTCAGTaGGACAGGATGGAATGCAGATCACAGAATTTATAC	+
Preference number: 3 (lower is better) Translates to: GNMWIDWNWTSQ*DRMECRSQNLY Trigger: GTATAAATTCTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAATTCCAGTCTATCCACATGTTACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072678.6
CDS TCA 90 bp	CAGGCCATTCTTCATTCTCGGGCCTGGAGGCAGCGATCTGTAGTGTaGGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATTGGATA	+
Preference number: 5 (lower is better) Translates to: QAILHSRAWRQRSVV*EQEHVQVPGPWHWI Trigger: TATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACTACAGATCGCTGCCTCCAGGCCCGAGAATGAAGAATGGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098042.10
CDS CCA 90 bp	TTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATaGACACAGACTAGGGTCAGTCCCAAACACAGCAGCAACAGCATC	+
Preference number: 5 (lower is better) Translates to: FSTLKFLPVELASSA*TQTRVSPKHSSNSI Trigger: GATGCTGTTGCTGCTGTGTTTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTTTAATGTAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072678.6 ENSMUST00000098042.10
CDS TCA 72 bp	CTTCATTCTCGGGCCTGGAGGCAGCGATCTGTAGTGTaGGAACAAGAACATGTTCAGGTACCAGGTCCATGG	+
Preference number: 6 (lower is better) Translates to: LHSRAWRQRSVV*EQEHVQVPGPW Trigger: CCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACTACAGATCGCTGCCTCCAGGCCCGAGAATGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098042.10
CDS CAA 90 bp	TGTAGTGTGAGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATaGGATAGGTCAATGATATTTTCTCTAAGGATTCCATGCTCCTCA	+
Preference number: 6 (lower is better) Translates to: CSVRTRTCSGTRSMA*DRSMIFSLRIPCSS Trigger: TGAGGAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098042.10
CDS CAA 72 bp	TCATACGTCACAGAATATTTACCAGCCTTTTCTGTTTaGTCAGCAACCATAGATAATTCCGAGCACTCTTCA	+
Preference number: 6 (lower is better) Translates to: SYVTEYLPAFSV*SATIDNSEHSS Trigger: TGAAGAGTGCTCGGAATTATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTAAATATTCTGTGACGTATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072678.6 ENSMUST00000098042.10
CDS CAA 90 bp	TTGAATCCATCATACGTCACAGAATATTTACCAGCCTTTTCTGTTTaGTCAGCAACCATAGATAATTCCGAGCACTCTTCATCTCTTACA	+
Preference number: 6 (lower is better) Translates to: LNPSYVTEYLPAFSV*SATIDNSEHSSSLT Trigger: TGTAAGAGATGAAGAGTGCTCGGAATTATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTAAATATTCTGTGACGTATGATGGATTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072678.6 ENSMUST00000098042.10
CDS CCA 72 bp	GTATGGACTTTAAGAACTAAGGAATTCTCCAAGACATaGATTTGCTCCAGAAAAAGTCTAAAGTTGCCATGT	+
Preference number: 6 (lower is better) Translates to: VWTLRTKEFSKT*ICSRKSLKLPC Trigger: ACATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTAGTTCTTAAAGTCCATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072678.6 ENSMUST00000098042.10
CDS GCA 72 bp	ACTTTAAGAACTAAGGAATTCTCCAAGACATGGATTTaGTCCAGAAAAAGTCTAAAGTTGCCATGTTCTTCT	+
Preference number: 6 (lower is better) Translates to: TLRTKEFSKTWI*SRKSLKLPCSS Trigger: AGAAGAACATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTAGTTCTTAAAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072678.6 ENSMUST00000098042.10