Pregenerated sensors for MUP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078683Ensembl transcript IDs: ENSMUST00000084548.11, ENSMUST00000103012.10, ENSMUST00000107499.4, ENSMUST00000135953.2
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TACCACAACCTGCCATTCTGTCTGTTAATGATATTGAACCCATCGCTGAGCCATCACCAACCCACTCCTTaGTCTCTTTGGATATTGCCC | + |
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Preference number: 2 (lower is better) Translates to: YHNLPFCLLMILNPSLSHHQPTP*SLWILP Trigger: GGGCAATATCCAAAGAGAGCAAGGAGTGGGTTGGTG...ATGGCTCAGCGATGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR-3UTR CCA 90 bp | ATAGCAATTTGCTCTCCAACCTGGTTGAGAAGTAGTGATCAGGGACCTCCACTGTTCTTGGCTAAGTCTTaGGTCACTTTACTTCCAAGC | + |
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Preference number: 2 (lower is better) Translates to: IAICSPTWLRSSDQGPPLFLAKS*VTLLPS Trigger: GCTTGGAAGTAAAGTGACCCAAGACTTAGCCAAGAA...CAGTGGAGGTCCCTGATCACTACTTCTCAACCAGGTTGGAGAGCAAATTGCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR-3UTR CCA 90 bp | TACCACAACCTGCCATTCTGTCTGTTAATGATATTGAACCCATCGCTGAGCCATACAACATTAATACTTTaGGAAGGGCCTCTCCATGAA | + |
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Preference number: 2 (lower is better) Translates to: YHNLPFCLLMILNPSLSHTTLIL*EGPLHE Trigger: TTCATGGAGAGGCCCTTCCCAAAGTATTAATGTTGT...ATGGCTCAGCGATGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR-3UTR CCA 90 bp | AGATCACAAATCCAGACAATTCAAAGCCAATTATCAAGCTTTCCTAGAAGATTCACTCCTTGCTCTCTTTaGATATTGCCCACCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RSQIQTIQSQLSSFPRRFTPCSL*ILPTWR Trigger: CCTCCAGGTGGGCAATATCCAAAGAGAGCAAGGAGT...GAATCTTCTAGGAAAGCTTGATAATTGGCTTTGAATTGTCTGGATTTGTGATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR CAA 90 bp | AAAGAACAGTTATACCACAACCTGCCATTCTGTCTGTTAATGATATaGAACCCATCGCTGAGCCATTTTTATACAACCATACATCAACTA | + |
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Preference number: 2 (lower is better) Translates to: KEQLYHNLPFCLLMI*NPSLSHFYTTIHQL Trigger: TAGTTGATGTATGGTTGTATAAAAATGGCTCAGCGATGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTATAACTGTTCTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGAACAGTTATACCACAACCTGCCATTCTGTCTGTTAATGATATTGAACCCAAAATCCTTATTTTCTTaGCTAAGTCTTGGGTCACTT | + |
|
Preference number: 2 (lower is better) Translates to: KEQLYHNLPFCLLMILNPKSLFS*LSLGSL Trigger: AAGTGACCCAAGACTTAGCCAAGAAAATAAGGATTT...TGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTATAACTGTTCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR GCA 72 bp | TGGGAAGGGCCTCTCCATGAACACCAACCCACTCCTTaGTCTCTTTGGATATTGCCCACCTGGAGGCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: WEGPLHEHQPTP*SLWILPTWRLR Trigger: CCTGAGCCTCCAGGTGGGCAATATCCAAAGAGAGCAAGGAGTGGGTTGGTGTTCATGGAGAGGCCCTTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107499.4 ENSMUST00000135953.2 |
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| 3UTR-3UTR CAA 90 bp | ATAGCAATTTGCTCTCCAACCTGGTTGAGAAGTAGTGATCAGGGACCTCCACTGACACCAACCCACTCCTaGCTCTCTTTGGATATTGCC | + |
|
Preference number: 3 (lower is better) Translates to: IAICSPTWLRSSDQGPPLTPTHS*LSLDIA Trigger: GGCAATATCCAAAGAGAGCAAGGAGTGGGTTGGTGT...CAGTGGAGGTCCCTGATCACTACTTCTCAACCAGGTTGGAGAGCAAATTGCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGAACAGTTATACCACAACCTGCCATTCTGTCTGTTAATGATATTGAACCCACAAATCCTTATTTTCTaGGCTAAGTCTTGGGTCACT | + |
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Preference number: 3 (lower is better) Translates to: KEQLYHNLPFCLLMILNPQILIF*AKSWVT Trigger: AGTGACCCAAGACTTAGCCAAGAAAATAAGGATTTG...TGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTATAACTGTTCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| CDS-3UTR CCA 90 bp | CACCAACCCACTCCTTGCTCTCTTTGGATATTGCCCACCTGGAGGCTCAGGCCACTAGCTTCTTCTGCATaGACACAGACTAGGGTCAGT | + |
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Preference number: 4 (lower is better) Translates to: HQPTPCSLWILPTWRLRPLASSA*TQTRVS Trigger: ACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAG...TGGCCTGAGCCTCCAGGTGGGCAATATCCAAAGAGAGCAAGGAGTGGGTTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107499.4 |
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| 3UTR CAA 72 bp | GAAAGGAGGGCCATAGCAATTTGCTCTCCAACCTGGTaGAGAAGTAGTGATCAGGGACCTCCACTGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: ERRAIAICSPTW*RSSDQGPPLPG Trigger: ACCTGGCAGTGGAGGTCCCTGATCACTACTTCTCAACCAGGTTGGAGAGCAAATTGCTATGGCCCTCCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR CAA 72 bp | TTATACCACAACCTGCCATTCTGTCTGTTAATGATATaGAACCCATCGCTGAGCCATTTTTATACAACCATA | + |
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Preference number: 4 (lower is better) Translates to: LYHNLPFCLLMI*NPSLSHFYTTI Trigger: TATGGTTGTATAAAAATGGCTCAGCGATGGGTTCAATATCATTAACAGACAGAATGGCAGGTTGTGGTATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR CAA 72 bp | ACTTTTAAAGACTTCACACATTATATGAGTGACATCTaGTACTATGTGAGAAAGGAGGGCCATAGCAATTTG | + |
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Preference number: 4 (lower is better) Translates to: TFKDFTHYMSDI*YYVRKEGHSNL Trigger: CAAATTGCTATGGCCCTCCTTTCTCACATAGTACAAGATGTCACTCATATAATGTGTGAAGTCTTTAAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| 3UTR CAA 72 bp | ATACATCAACTATGTAAAACTCAAATCCTTATTTTCTaGGCTAAGTCTTGGGTCACTTTACTTCCAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: IHQLCKTQILIF*AKSWVTLLPSS Trigger: TGAGCTTGGAAGTAAAGTGACCCAAGACTTAGCCAAGAAAATAAGGATTTGAGTTTTACATAGTTGATGTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135953.2 |
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| CDS CCA 90 bp | TTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATaGACACAGACTAGGGTCAGTCCCACACACAGCAGCAGCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: FSTLKFLPVELASSA*TQTRVSPTHSSSSI Trigger: GATGCTGCTGCTGCTGTGTGTGGGACTGACCCTAGTCTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTTTAATGTAGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000084548.11 ENSMUST00000103012.10 ENSMUST00000107499.4 |
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| CDS GCA 90 bp | TCCATGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTTCTCACATAGTTGTGCAAACCTTTCCTTGATGTCTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: SMALDRSMIFSLRIP*FSHSCANLSLMSEL Trigger: GAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGAAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084548.11 |
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| CDS GCA 90 bp | CGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTTCTCACATAGTTGTGCAAACCTTTCCTTGATGTCTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: RLALDRSMIFSLRIP*FSHSCANLSLMSEL Trigger: GAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGAAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCAATCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103012.10 ENSMUST00000107499.4 |
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| CDS CAA 90 bp | TGTAGTGTGAGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATaGGATAGGTCAATGATATTTTCTCTAAGGATTCCATGCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: CSVRTRTCSGTRSMA*DRSMIFSLRIPCFS Trigger: TGAGAAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084548.11 |
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| CDS CAA 72 bp | AGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATaGGATAGGTCAATGATATTTTCTCTAAGGATTCCA | + |
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Preference number: 6 (lower is better) Translates to: RTRTCSGTRSMA*DRSMIFSLRIP Trigger: TGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000084548.11 |
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| CDS GCA 72 bp | TTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTTCTCACATAGTTGTGCAAACCTTTCCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: LDRSMIFSLRIP*FSHSCANLSLM Trigger: CATCAAGGAAAGGTTTGCACAACTATGTGAGAAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000084548.11 ENSMUST00000103012.10 ENSMUST00000107499.4 |
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