Pregenerated sensors for MUCL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036925Ensembl transcript IDs: ENSMUST00000037685.9, ENSMUST00000226584.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATTTCTGCTGTTCAGTACTATCTGCCTaGGTTTCAGAGCCAGTATTT | + |
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Preference number: 4 (lower is better) Translates to: MQLPCYLETLYTFNNFCCSVLSA*VSEPVF Trigger: AAATACTGGCTCTGAAACTCAGGCAGATAGTACTGA...ACAGCAGAAATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAGCCATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATTTGATCAGTACTATCTaGCTGAGTTTCAGAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: RKAMQLPCYLETLYTFNNLISTI*LSFRAS Trigger: ACTGGCTCTGAAACTCAGGCAGATAGTACTGATCAA...ATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCATGGCTTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAGCCATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATTTCAAGTTTAGTTTTTaGATTGGACTCGTCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: RKAMQLPCYLETLYTFNNFKFSF*IGLVFR Trigger: ACGGAAGACGAGTCCAATGCAAAAACTAAACTTGAA...ATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCATGGCTTTTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR TCA 90 bp | AGAATAGTCAGGATAAATAACTGGAGGAAATCAAATCAAGAATGTGCTAGTCTGTCAGTACTATCTGCCTaGGTTTCAGAGCCAGTATTT | + |
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Preference number: 4 (lower is better) Translates to: RIVRINNWRKSNQECASLSVLSA*VSEPVF Trigger: AAATACTGGCTCTGAAACTCAGGCAGATAGTACTGA...CAGACTAGCACATTCTTGATTTGATTTCCTCCAGTTATTTATCCTGACTATTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS-3UTR GCA 90 bp | AGAATAGTCAGGATAAATAACTGGAGGAAATCAAATCAAGAATGTGCTAGTCTGTTGATCAGTACTATCTaGCTGAGTTTCAGAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: RIVRINNWRKSNQECASLLISTI*LSFRAS Trigger: ACTGGCTCTGAAACTCAGGCAGATAGTACTGATCAA...CAGACTAGCACATTCTTGATTTGATTTCCTCCAGTTATTTATCCTGACTATTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS-3UTR GCA 90 bp | AGAATAGTCAGGATAAATAACTGGAGGAAATCAAATCAAGAATGTGCTAGTCTGTTCAAGTTTAGTTTTTaGATTGGACTCGTCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: RIVRINNWRKSNQECASLFKFSF*IGLVFR Trigger: ACGGAAGACGAGTCCAATGCAAAAACTAAACTTGAA...CAGACTAGCACATTCTTGATTTGATTTCCTCCAGTTATTTATCCTGACTATTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS-3UTR CAA 90 bp | AGAAAAGCCATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATGCCTCATTAGCAGTGTaGGTATCATCAGTGTTCACA | + |
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Preference number: 5 (lower is better) Translates to: RKAMQLPCYLETLYTFNNASLAV*VSSVFT Trigger: TGTGAACACTGATGATACCAACACTGCTAATGAGGC...ATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCATGGCTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR CAA 90 bp | AGAAAAGCCATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATTCATTTAACTCTTCCTaGTTGTCTTCCTCAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RKAMQLPCYLETLYTFNNSFNSS*LSSSEA Trigger: GGCCTCTGAGGAAGACAACAAGGAAGAGTTAAATGA...ATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCATGGCTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGTTGCCATGCTACCTGGAGACACTTTACACTTTCAATAATTTCTGCTGTATCAACTTCTTGATTTaGATCAGTACTATCTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: MQLPCYLETLYTFNNFCCINFLI*ISTICL Trigger: CAGGCAGATAGTACTGATCAAAATCAAGAAGTTGAT...ACAGCAGAAATTATTGAAAGTGTAAAGTGTCTCCAGGTAGCATGGCAACTGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226584.2 |
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| CDS-3UTR CAA 90 bp | CAAATCAAGAATGTGCTAGTCTGTTTCAGAAAGATCAGTAGTAGAAGATGCAAAGCCTCATTAGCAGTGTaGGTATCATCAGTGTTCACA | + |
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Preference number: 5 (lower is better) Translates to: QIKNVLVCFRKISSRRCKASLAV*VSSVFT Trigger: TGTGAACACTGATGATACCAACACTGCTAATGAGGC...TTTGCATCTTCTACTACTGATCTTTCTGAAACAGACTAGCACATTCTTGATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS-3UTR CAA 90 bp | CAAATCAAGAATGTGCTAGTCTGTTTCAGAAAGATCAGTAGTAGAAGATGCAAATTTAACTCTTCCTTGTaGTCTTCCTCAGAGGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: QIKNVLVCFRKISSRRCKFNSSL*SSSEAS Trigger: TGAGGCCTCTGAGGAAGACAACAAGGAAGAGTTAAA...TTTGCATCTTCTACTACTGATCTTTCTGAAACAGACTAGCACATTCTTGATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS-3UTR CAA 90 bp | AGAATAGTCAGGATAAATAACTGGAGGAAATCAAATCAAGAATGTGCTAGTCTGTCATTTAACTCTTCCTaGTTGTCTTCCTCAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: RIVRINNWRKSNQECASLSFNSS*LSSSEA Trigger: GGCCTCTGAGGAAGACAACAAGGAAGAGTTAAATGA...CAGACTAGCACATTCTTGATTTGATTTCCTCCAGTTATTTATCCTGACTATTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS TCA 90 bp | ATTAGCAGTGTTGGTATCATCAGTGTTCACATTTTCTTCTTCGACTaGATCAGAGGAATCAACTTCTTGATTTTGATCAGTACTATCTGC | + |
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Preference number: 5 (lower is better) Translates to: ISSVGIISVHIFFFD*IRGINFLILISTIC Trigger: GCAGATAGTACTGATCAAAATCAAGAAGTTGATTCCTCTGATTCAGTCGAAGAAGAAAATGTGAACACTGATGATACCAACACTGCTAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037685.9 ENSMUST00000226584.2 |
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| CDS-3UTR CAA 90 bp | CAAATCAAGAATGTGCTAGTCTGTTTCAGAAAGATCAGTAGTAGAAGATGCAAAATCAACTTCTTGATTTaGATCAGTACTATCTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: QIKNVLVCFRKISSRRCKINFLI*ISTICL Trigger: CAGGCAGATAGTACTGATCAAAATCAAGAAGTTGAT...TTTGCATCTTCTACTACTGATCTTTCTGAAACAGACTAGCACATTCTTGATTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037685.9 |
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| CDS CCA 72 bp | GTTCCAGAAGTTTCAGTACTGTTTGTCTCCGGGTCCTaGCAAGAGACTAGGATAGTGGAAACACCAAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: VPEVSVLFVSGS*QETRIVETPSN Trigger: GTTGCTTGGTGTTTCCACTATCCTAGTCTCTTGCCAGGACCCGGAGACAAACAGTACTGAAACTTCTGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000037685.9 ENSMUST00000226584.2 |
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| CDS CAA 72 bp | TTATCCCCGGTACTGTTATCATTTAACTCTTCCTTGTaGTCTTCCTCAGAGGCCTCATTAGCAGTGTTGGTA | + |
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Preference number: 6 (lower is better) Translates to: LSPVLLSFNSSL*SSSEASLAVLV Trigger: TACCAACACTGCTAATGAGGCCTCTGAGGAAGACAACAAGGAAGAGTTAAATGATAACAGTACCGGGGATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000037685.9 ENSMUST00000226584.2 |
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| CDS GCA 72 bp | AGAGGAATCAACTTCTTGATTTTGATCAGTACTATCTaGCTGAGTTTCAGAGCCAGTATTTTCACCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: RGINFLILISTI*LSFRASIFTSR Trigger: TCTGCTGGTGAAAATACTGGCTCTGAAACTCAGGCAGATAGTACTGATCAAAATCAAGAAGTTGATTCCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037685.9 ENSMUST00000226584.2 |
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| CDS TCA 72 bp | GTTGGTATCATCAGTGTTCACATTTTCTTCTTCGACTaGATCAGAGGAATCAACTTCTTGATTTTGATCAGT | + |
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Preference number: 6 (lower is better) Translates to: VGIISVHIFFFD*IRGINFLILIS Trigger: ACTGATCAAAATCAAGAAGTTGATTCCTCTGATTCAGTCGAAGAAGAAAATGTGAACACTGATGATACCAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000037685.9 ENSMUST00000226584.2 |
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