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Pregenerated sensors for MUCL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060311

Ensembl transcript IDs: ENSMUST00000078842.11, ENSMUST00000226484.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp GTTCTAGTCTGTGTCAGAAAGGTCAGTAGTAGAAGATaGAAACTCATCTACCATGAATGTTATTCAATATCA +
Preference number: 3 (lower is better)
Translates to: VLVCVRKVSSRR*KLIYHECYSIS
Trigger: TGATATTGAATAACATTCATGGTAGATGAGTTTGCATCTTCTACTACTGACCTTTCTGACACAGACTAGAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR TCA 90 bp GGAAATCAAATCAAGGATGTTCTAGTCTGTGTCAGAAAGGTCAGTAGTAGAAGATCATCCTCTTCCTTCTaGATGGAGGTGTCACCCACT +
Preference number: 4 (lower is better)
Translates to: GNQIKDVLVCVRKVSSRRSSSSF*MEVSPT
Trigger: AGTGGGTGACACCTCCATTCAGAAGGAAGAGGATGA...TCTTCTACTACTGACCTTTCTGACACAGACTAGAACATCCTTGATTTGATTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CCA 90 bp CAAATAGTCAGGGTAAATAACTGGAGGAAATCAAATCAAGGATGTTCTAGTCTGCCTCTTCCTTCTGAATaGAGGTGTCACCCACTTTGG +
Preference number: 4 (lower is better)
Translates to: QIVRVNNWRKSNQGCSSLPLPSE*RCHPLW
Trigger: CCAAAGTGGGTGACACCTCCATTCAGAAGGAAGAGG...CAGACTAGAACATCCTTGATTTGATTTCCTCCAGTTATTTACCCTGACTATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR TCA 90 bp GAGCAAATAGTCAGGGTAAATAACTGGAGGAAATCAAATCAAGGATGTTCTAGTTCATTCACATTGTTCTaGTTAGAGGTATTATCCCCT +
Preference number: 4 (lower is better)
Translates to: EQIVRVNNWRKSNQGCSSSFTLF*LEVLSP
Trigger: AGGGGATAATACCTCTAATCAGAACAATGTGAATGA...ACTAGAACATCCTTGATTTGATTTCCTCCAGTTATTTACCCTGACTATTTGCTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CCA 90 bp CAAATAGTCAGGGTAAATAACTGGAGGAAATCAAATCAAGGATGTTCTAGTCTGCCTCTTGTTTCTCATTaGAGGTATCATTCACATTGT +
Preference number: 4 (lower is better)
Translates to: QIVRVNNWRKSNQGCSSLPLVSH*RYHSHC
Trigger: ACAATGTGAATGATACCTCCAATGAGAAACAAGAGG...CAGACTAGAACATCCTTGATTTGATTTCCTCCAGTTATTTACCCTGACTATTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CAA 90 bp CAAATCAAGGATGTTCTAGTCTGTGTCAGAAAGGTCAGTAGTAGAAGATGCAAATCTGTCTCTCCCTTTTaGTCCTCCTCAGAGGCCTCA +
Preference number: 5 (lower is better)
Translates to: QIKDVLVCVRKVSSRRCKSVSPF*SSSEAS
Trigger: TGAGGCCTCTGAGGAGGACAAAAAGGGAGAGACAGA...TTTGCATCTTCTACTACTGACCTTTCTGACACAGACTAGAACATCCTTGATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CAA 90 bp ATCAAGGATGTTCTAGTCTGTGTCAGAAAGGTCAGTAGTAGAAGATGCAAACTCAGAGGTATTATCCTCTaGTTTCTCATTGGAGGTATC +
Preference number: 5 (lower is better)
Translates to: IKDVLVCVRKVSSRRCKLRGIIL*FLIGGI
Trigger: GATACCTCCAATGAGAAACAAGAGGATAATACCTCT...GAGTTTGCATCTTCTACTACTGACCTTTCTGACACAGACTAGAACATCCTTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CAA 90 bp CAAATAGTCAGGGTAAATAACTGGAGGAAATCAAATCAAGGATGTTCTAGTCTGAGAGGACTCAGCATCTaGGTTTTCATTAGTACTATC +
Preference number: 5 (lower is better)
Translates to: QIVRVNNWRKSNQGCSSLRGLSI*VFISTI
Trigger: GATAGTACTAATGAAAACCAAGATGCTGAGTCCTCT...CAGACTAGAACATCCTTGATTTGATTTCCTCCAGTTATTTACCCTGACTATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS-3UTR CAA 90 bp CAAATAGTCAGGGTAAATAACTGGAGGAAATCAAATCAAGGATGTTCTAGTCTGCTCTCATTTTCTTCCTaGGCTAAATTAGAGGACTCA +
Preference number: 5 (lower is better)
Translates to: QIVRVNNWRKSNQGCSSLLSFSS*AKLEDS
Trigger: TGAGTCCTCTAATTTAGCCAAGGAAGAAAATGAGAG...CAGACTAGAACATCCTTGATTTGATTTCCTCCAGTTATTTACCCTGACTATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226484.2
CDS TCA 90 bp GTATTATCCTCTTGTTTCTCATTGGAGGTATCATTCACATTGTTCTaGTTAGAGGTATTATCCCCTTCTATGTTATTGGAGGTATCATCC +
Preference number: 5 (lower is better)
Translates to: VLSSCFSLEVSFTLF*LEVLSPSMLLEVSS
Trigger: GGATGATACCTCCAATAACATAGAAGGGGATAATACCTCTAATCAGAACAATGTGAATGATACCTCCAATGAGAAACAAGAGGATAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2
CDS CAA 90 bp GTGGAGGTGTCTTCCCTGGTAATGTTATCATCTGTCTCTCCCTTTTaGTCCTCCTCAGAGGCCTCATTAGCAGTGTTGGTATTCTCAGTG +
Preference number: 6 (lower is better)
Translates to: VEVSSLVMLSSVSPF*SSSEASLAVLVFSV
Trigger: CACTGAGAATACCAACACTGCTAATGAGGCCTCTGAGGAGGACAAAAAGGGAGAGACAGATGATAACATTACCAGGGAAGACACCTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2
CDS CAA 90 bp TCTGTCTCTCCCTTTTTGTCCTCCTCAGAGGCCTCATTAGCAGTGTaGGTATTCTCAGTGCTCTCATTTTCTTCCTTGGCTAAATTAGAG +
Preference number: 6 (lower is better)
Translates to: SVSPFLSSSEASLAV*VFSVLSFSSLAKLE
Trigger: CTCTAATTTAGCCAAGGAAGAAAATGAGAGCACTGAGAATACCAACACTGCTAATGAGGCCTCTGAGGAGGACAAAAAGGGAGAGACAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2
CDS GCA 72 bp AGAGGACTCAGCATCTTGGTTTTCATTAGTACTATCTaGCTGAGTTTCAGAGCTAGTATTTCCACCAGTAGA +
Preference number: 6 (lower is better)
Translates to: RGLSILVFISTI*LSFRASISTSR
Trigger: TCTACTGGTGGAAATACTAGCTCTGAAACTCAGGCAGATAGTACTAATGAAAACCAAGATGCTGAGTCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2
CDS CAA 72 bp GCAGTGTTGGTATTCTCAGTGCTCTCATTTTCTTCCTaGGCTAAATTAGAGGACTCAGCATCTTGGTTTTCA +
Preference number: 6 (lower is better)
Translates to: AVLVFSVLSFSS*AKLEDSASWFS
Trigger: TGAAAACCAAGATGCTGAGTCCTCTAATTTAGCCAAGGAAGAAAATGAGAGCACTGAGAATACCAACACTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2
CDS CAA 90 bp GCCTCATTAGCAGTGTTGGTATTCTCAGTGCTCTCATTTTCTTCCTaGGCTAAATTAGAGGACTCAGCATCTTGGTTTTCATTAGTACTA +
Preference number: 6 (lower is better)
Translates to: ASLAVLVFSVLSFSS*AKLEDSASWFSLVL
Trigger: TAGTACTAATGAAAACCAAGATGCTGAGTCCTCTAATTTAGCCAAGGAAGAAAATGAGAGCACTGAGAATACCAACACTGCTAATGAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078842.11
ENSMUST00000226484.2