Pregenerated sensors for MUC15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050808Ensembl transcript IDs: ENSMUST00000090332.5, ENSMUST00000111016.9, ENSMUST00000111017.9
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATATCACTTTCCTGGCTAGAGTCAGTTTTCTCCCTCAGTCCTGTTaGATGCCCCTATTGTCAACATGCCAGCCAAAGGGACTAACCACA | + |
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Preference number: 1 (lower is better) Translates to: DITFLARVSFLPQSC*MPLLSTCQPKGLTT Trigger: TGTGGTTAGTCCCTTTGGCTGGCATGTTGACAATAGGGGCATTCAACAGGACTGAGGGAGAAAACTGACTCTAGCCAGGAAAGTGATATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 90 bp | CTGAAACCTGATGTGTACTCATGCAAGCTGAAGTTCTTAAAACTTTaGGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCAGTT | + |
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Preference number: 1 (lower is better) Translates to: LKPDVYSCKLKFLKL*GLSGKISLSWLESV Trigger: AACTGACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAACTTCAGCTTGCATGAGTACACATCAGGTTTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 90 bp | ACTGGACCCATGGCACATTTTGCAAGAAATAAAAGATCGGAATATTaGTATGACAACTTTCAATCGAAGACACTTGCTCACTATCAGAGT | + |
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Preference number: 1 (lower is better) Translates to: TGPMAHFARNKRSEY*YDNFQSKTLAHYQS Trigger: ACTCTGATAGTGAGCAAGTGTCTTCGATTGAAAGTTGTCATATCAATATTCCGATCTTTTATTTCTTGCAAAATGTGCCATGGGTCCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | AGATGCACCCTGCTTTTCCTGCACATTTCCTGTTTGTGCAGCATTCCCTGTGCACACATTTCCTGTTTGTaGAGCATTCCCTGTGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: RCTLLFLHISCLCSIPCAHISCL*SIPCAS Trigger: GCTTGCACAGGGAATGCTGCACAAACAGGAAATGTG...TGCACAGGGAATGCTGCACAAACAGGAAATGTGCAGGAAAAGCAGGGTGCATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | TGGTTGTATAACACATGCTTCAGCCCAGCTGAAGACTGCAAGAAAAGAAAGCTTATAGGAATGCCATCTTaGAGGCTTTCTCCCCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: WLYNTCFSPAEDCKKRKLIGMPS*RLSPPS Trigger: AGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTAT...AAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCATGTGTTATACAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CGCTGCCATGGTAATGTTGCATTAATTTTACCTTATCCCACAAAGGTTTCCTTGATGGAGATGAACTTGTaGCCTCTGCAGCCATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: RCHGNVALILPYPTKVSLMEMNL*PLQPSF Trigger: GAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCAT...CAAGGAAACCTTTGTGGGATAAGGTAAAATTAATGCAACATTACCATGGCAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | TGCCATGGTAATGTTGCATTAATTTTACCTTATCCCACAAAGGTTTCCTTGGAAGTGCAGCATTCCCTGTaGAAGCAGCACAGCAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: CHGNVALILPYPTKVSLEVQHSL*KQHSSD Trigger: ATCACTGCTGTGCTGCTTGCACAGGGAATGCTGCAC...TTCCAAGGAAACCTTTGTGGGATAAGGTAAAATTAATGCAACATTACCATGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | TTCTTACATTTCAGGGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGTGCAGCATTCCCTGTaGAAGCAGCACAGCAGTGAT | + |
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Preference number: 2 (lower is better) Translates to: FLHFRVLVCLTVVQNGFFVQHSL*KQHSSD Trigger: ATCACTGCTGTGCTGCTTGCACAGGGAATGCTGCAC...AAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACCCTGAAATGTAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACAGCACCCTGCTTTTCCTaGACATTTCCTGTTTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: GVSMFDCSAKWLLWESRTAPCFS*TFPVCA Trigger: TGCACAAACAGGAAATGTGCAGGAAAAGCAGGGTGC...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | TGTGTTTGCATGCTAACTCTCGTTGCTGTTTTCCCTGTGCTCCATGCCTCTAGAAACCACATGTACTGTTaGAGAAGAGTGAATGTATTA | + |
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Preference number: 2 (lower is better) Translates to: CVCMLTLVAVFPVLHASRNHMYC*RRVNVL Trigger: TAATACATTCACTCTTCTGCAACAGTACATGTGGTT...TCTAGAGGCATGGAGCACAGGGAAAACAGCAACGAGAGTTAGCATGCAAACACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | CGCTGCCATGGTAATGTTGCATTAATTTTACCTTATCCCACAAAGGTTTCCTTGAAGAAAGCTTTTCGATaGCAGATGCACCCTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: RCHGNVALILPYPTKVSLKKAFR*QMHPAF Trigger: AAAAGCAGGGTGCATCTGTCATCGAAAAGCTTTCTT...CAAGGAAACCTTTGTGGGATAAGGTAAAATTAATGCAACATTACCATGGCAGCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACAATGCTTCAGCCCAGCTaGAGACTGCAAGAAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: GVSMFDCSAKWLLWESRTMLQPS*RLQEKK Trigger: TTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCAT...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GTGCCACTCATACCGTGTATTGACTCAACAATAAAGACTATAAGATATCTAAGAATGGAGATGAACTTGTaGCCTCTGCAGCCATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: VPLIPCIDSTIKTIRYLRMEMNL*PLQPSF Trigger: GAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCAT...TCTTAGATATCTTATAGTCTTTATTGTTGAGTCAATACACGGTATGAGTGGCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAAAGCACCCTGCTTTTCCTaGACATTTCCTGTTTGTGCA | + |
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Preference number: 2 (lower is better) Translates to: QNQTFCHIVFLTLKQPRKAPCFS*TFPVCA Trigger: TGCACAAACAGGAAATGTGCAGGAAAAGCAGGGTGC...TTTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACAAGCCCAGCTGAAGACTaGAAGAAAAGAAAGCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: GVSMFDCSAKWLLWESRTSPAED*KKRKLF Trigger: GAAAAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCT...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | TTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGTTCTGGGAACTTTCAATGCTTCAGCCCAGCTaGAGACTGCAAGAAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LLTIRVLYFITFLFWELSMLQPS*RLQEKK Trigger: TTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCAT...TGAAAGTTCCCAGAACAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACATTATCACCCAAACTATaGCCCCAAGAAAATGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: GVSMFDCSAKWLLWESRTLSPKL*PQENAC Trigger: ACAAGCATTTTCTTGGGGGCATAGTTTGGGTGATAA...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | CGAAAACAAACTAAAACCAGAATTAAGTCTCTTCTATCGTTACGTGTCCAAATGAAGAAAGCTTTTCGATaGCAGATGCACCCTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: RKQTKTRIKSLLSLRVQMKKAFR*QMHPAF Trigger: AAAAGCAGGGTGCATCTGTCATCGAAAAGCTTTCTT...CATTTGGACACGTAACGATAGAAGAGACTTAATTCTGGTTTTAGTTTGTTTTCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | CCTAGGGAGAAACCACAGTACCTAATGCTAACAATAACTTCTATTTTAGTACAACCTCATGTTTCCAATTaGGATTCTAAGGTGCCCAAT | + |
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Preference number: 2 (lower is better) Translates to: PREKPQYLMLTITSILVQPHVSN*DSKVPN Trigger: ATTGGGCACCTTAGAATCTCAATTGGAAACATGAGG...TTGTACTAAAATAGAAGTTATTGTTAGCATTAGGTACTGTGGTTTCTCCCTAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CGAAAACAAACTAAAACCAGAATTAAGTCTCTTCTATCGTTACGTGTCCAAATGAGCCCAGCTGAAGACTaGAAGAAAAGAAAGCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: RKQTKTRIKSLLSLRVQMSPAED*KKRKLF Trigger: GAAAAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCT...CATTTGGACACGTAACGATAGAAGAGACTTAATTCTGGTTTTAGTTTGTTTTCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CCTAGGGAGAAACCACAGTACCTAATGCTAACAATAACTTCTATTTTAGTACAAGTTATCAGTCAGCGCTaGCATGGTAATGTTGCATTA | + |
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Preference number: 2 (lower is better) Translates to: PREKPQYLMLTITSILVQVISQR*HGNVAL Trigger: TAATGCAACATTACCATGGCAGCGCTGACTGATAAC...TTGTACTAAAATAGAAGTTATTGTTAGCATTAGGTACTGTGGTTTCTCCCTAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAAAGTTATCAGTCAGCGCTaGCATGGTAATGTTGCATTA | + |
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Preference number: 2 (lower is better) Translates to: QNQTFCHIVFLTLKQPRKVISQR*HGNVAL Trigger: TAATGCAACATTACCATGGCAGCGCTGACTGATAAC...TTTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCAACCACATGTACTGTTaGAGAAGAGTGAATGTATTA | + |
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Preference number: 2 (lower is better) Translates to: VLKTLRTFREDITFLARVNHMYC*RRVNVL Trigger: TAATACATTCACTCTTCTGCAACAGTACATGTGGTT...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAATCGAAGACACTTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGCAATTAACTGAAACCTaGTGTGTACTCATGCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: FNRRHLLTIRVLYFITFLQLTET*CVLMQA Trigger: AGCTTGCATGAGTACACATCAGGTTTCAGTTAATTG...CAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAAGTGTCTTCGATTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | TTCTTACATTTCAGGGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTTCCTCATCTCTCCTGTaGGGAAATTACATAAACTAC | + |
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Preference number: 2 (lower is better) Translates to: FLHFRVLVCLTVVQNGFFSSSLL*GNYINY Trigger: GTAGTTTATGTAATTTCCTCACAGGAGAGATGAGGA...AAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACCCTGAAATGTAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | TTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGTTCTGGGAACTTTCATTATCACCCAAACTATaGCCCCAAGAAAATGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: LLTIRVLYFITFLFWELSLSPKL*PQENAC Trigger: ACAAGCATTTTCTTGGGGGCATAGTTTGGGTGATAA...TGAAAGTTCCCAGAACAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACACAGAACCAAACATTCTaGCATATAGTATTTCTGACT | + |
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Preference number: 2 (lower is better) Translates to: GVSMFDCSAKWLLWESRTQNQTF*HIVFLT Trigger: AGTCAGAAATACTATATGGCAGAATGTTTGGTTCTG...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR TCA 90 bp | TTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGTTCTGGGAACTTTCATTCCCAGATTTTGTGTaGAGAACGGTTATTGTTATC | + |
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Preference number: 2 (lower is better) Translates to: LLTIRVLYFITFLFWELSFPDFV*RTVIVI Trigger: GATAACAATAACCGTTCTTCACACAAAATCTGGGAA...TGAAAGTTCCCAGAACAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR GCA 90 bp | CGAAAACAAACTAAAACCAGAATTAAGTCTCTTCTATCGTTACGTGTCCAAATGGCTTTTCGTTCTTATTaGCTTAATTTCTCAGAACCA | + |
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Preference number: 2 (lower is better) Translates to: RKQTKTRIKSLLSLRVQMAFRSY*LNFSEP Trigger: TGGTTCTGAGAAATTAAGGCAATAAGAACGAAAAGC...CATTTGGACACGTAACGATAGAAGAGACTTAATTCTGGTTTTAGTTTGTTTTCG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 72 bp | TTCCTGGCTAGAGTCAGTTTTCTCCCTCAGTCCTGTTaGATGCCCCTATTGTCAACATGCCAGCCAAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: FLARVSFLPQSC*MPLLSTCQPKG Trigger: TCCCTTTGGCTGGCATGTTGACAATAGGGGCATTCAACAGGACTGAGGGAGAAAACTGACTCTAGCCAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR GCA 72 bp | CGAAGTGGAGGTATAGCATCCATAGGAATGCCATCTTaGAGGCTTTCTCCCCCTTCTGGCATGGATGAATCA | + |
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Preference number: 3 (lower is better) Translates to: RSGGIASIGMPS*RLSPPSGMDES Trigger: TGATTCATCCATGCCAGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATGGATGCTATACCTCCACTTCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
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| 3UTR GCA 72 bp | TGGTTGTATAACACATGCTTCAGCCCAGCTGAAGACTaGAAGAAAAGAAAGCTTTTCGATGACAGATGCACC | + |
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Preference number: 3 (lower is better) Translates to: WLYNTCFSPAED*KKRKLFDDRCT Trigger: GGTGCATCTGTCATCGAAAAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCATGTGTTATACAACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR GCA 72 bp | AACATGCCAGCCAAAGGGACTAACCACATGTACTGTTaGAGAAGAGTGAATGTATTAGGAGACAAGCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: NMPAKGTNHMYC*RRVNVLGDKLF Trigger: GAAAAGCTTGTCTCCTAATACATTCACTCTTCTGCAACAGTACATGTGGTTAGTCCCTTTGGCTGGCATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | GTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACAACTGCACATTTCCTGTTaGTGCAGCATTCCCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: VLVCLTVVQNGFFGNLEQLHISC*CSIPCA Trigger: TGCACAGGGAATGCTGCACAAACAGGAAATGTGCAG...TTGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAATCGAAGACACTTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGCATAGGAATGCCATCTaGCAGGCTTTCTCCCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: FNRRHLLTIRVLYFITFLHRNAI*QAFSPF Trigger: GAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATG...CAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAAGTGTCTTCGATTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | TTCTTACATTTCAGGGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTCTGCACATTTCCTGTTaGTGCAGCATTCCCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: FLHFRVLVCLTVVQNGFFLHISC*CSIPCA Trigger: TGCACAGGGAATGCTGCACAAACAGGAAATGTGCAG...AAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACCCTGAAATGTAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | GTTTTGGTTCCCAGATTTTGTGTGAAGAACGGTTATTGTTATCAGTCAGCGCTGTTTGGTTCCCAGATTTaGTGTGAAGAACGGTTATTG | + |
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Preference number: 3 (lower is better) Translates to: VLVPRFCVKNGYCYQSALFGSQI*CEERLL Trigger: CAATAACCGTTCTTCACACAAAATCTGGGAACCAAA...CAGCGCTGACTGATAACAATAACCGTTCTTCACACAAAATCTGGGAACCAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAATCGAAGACACTTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGAAAATGGAGATGAACTaGTGCCCTCTGCAGCCATCT | + |
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Preference number: 3 (lower is better) Translates to: FNRRHLLTIRVLYFITFLKMEMN*CPLQPS Trigger: AGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTT...CAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAAGTGTCTTCGATTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | CAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAAAAAAATGGAGATGAACTaGTGCCCTCTGCAGCCATCT | + |
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Preference number: 3 (lower is better) Translates to: QNQTFCHIVFLTLKQPRKKMEMN*CPLQPS Trigger: AGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTT...TTTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTG 40% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 72 bp | GATGTGTACTCATGCAAGCTGAAGTTCTTAAAACTTTaGGGACTTTCAGGGAAGATATCACTTTCCTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: DVYSCKLKFLKL*GLSGKISLSWL Trigger: TAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAACTTCAGCTTGCATGAGTACACATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCGAAGTTCTTAAAACTTaGAGGACTTTCAGGGAAGAT | + |
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Preference number: 3 (lower is better) Translates to: VLKTLRTFREDITFLARVEVLKT*RTFRED Trigger: ATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAACTTC...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR-3UTR CAA 90 bp | TTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGTTCTGGGAACTTTCAGAAGTTCTTAAAACTTaGAGGACTTTCAGGGAAGAT | + |
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Preference number: 3 (lower is better) Translates to: LLTIRVLYFITFLFWELSEVLKT*RTFRED Trigger: ATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAACTTC...TGAAAGTTCCCAGAACAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 72 bp | CCTGTGAGGAAATTACATAAACTACTGGAAAACCAGTaGAGGTACCAGGTCAATAGATTAAAAGACTATACA | + |
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Preference number: 3 (lower is better) Translates to: PVRKLHKLLENQ*RYQVNRLKDYT Trigger: TGTATAGTCTTTTAATCTATTGACCTGGTACCTTCACTGGTTTTCCAGTAGTTTATGTAATTTCCTCACAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| 3UTR TCA 72 bp | ATGGCACATTTTGCAAGAAATAAAAGATCGGAATATTaGTATGACAACTTTCAATCGAAGACACTTGCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: MAHFARNKRSEY*YDNFQSKTLAH Trigger: GTGAGCAAGTGTCTTCGATTGAAAGTTGTCATATCAATATTCCGATCTTTTATTTCTTGCAAAATGTGCCAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TGTGTTTGCATGCTAACTCTCGTTGCTGTTTTCCCTGTGCTCCATGCCTCTAGATGTGGTCTTTGGAGGTaGAGGGAAGGGTCTTACTGT | + |
|
Preference number: 4 (lower is better) Translates to: CVCMLTLVAVFPVLHASRCGLWR*REGSYC Trigger: ACAGTAAGACCCTTCCCTCCACCTCCAAAGACCACA...TCTAGAGGCATGGAGCACAGGGAAAACAGCAACGAGAGTTAGCATGCAAACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAAAGGGGTCACAGGTGTaGTCTTTGGAGGTGGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLKGSQV*SLEVEG Trigger: TCCCTCCACCTCCAAAGACCACACCTGTGACCCCTT...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTCACAGGTGTGGTCTTTaGAGGTGGAGGGAAGGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLIHRCGL*RWREGS Trigger: AGACCCTTCCCTCCACCTCCAAAGACCACACCTGTG...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTAAGGGGTCACAGGTGTaGTCTTTGGAGGTGGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLIKGSQV*SLEVEG Trigger: TCCCTCCACCTCCAAAGACCACACCTGTGACCCCTT...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TGGTTGTATAACACATGCTTCAGCCCAGCTGAAGACTGCAAGAAAAGAAAGCTTAAGGGGTCACAGGTGTaGTCTTTGGAGGTGGAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: WLYNTCFSPAEDCKKRKLKGSQV*SLEVEG Trigger: TCCCTCCACCTCCAAAGACCACACCTGTGACCCCTT...AAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCATGTGTTATACAACCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR TCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAGCGCCGATGGGAAAATaGATCTGTTTTCCGTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLAPMGK*ICFPLS Trigger: GGACAACGGAAAACAGATTCATTTTCCCATCGGCGC...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTATGTGGTCTTTGGAGGTaGAGGGAAGGGTCTTACTGT | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLCGLWR*REGSYC Trigger: ACAGTAAGACCCTTCCCTCCACCTCCAAAGACCACA...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTTTATATTGAGGGGCGAAGTGGAGGTATAGCATCCATAGGAATGCCATCTTGCTGTGGTCTTTGGAGGTaGAGGGAAGGGTCTTACTGT | + |
|
Preference number: 4 (lower is better) Translates to: FYIEGRSGGIASIGMPSCCGLWR*REGSYC Trigger: ACAGTAAGACCCTTCCCTCCACCTCCAAAGACCACA...GCAAGATGGCATTCCTATGGATGCTATACCTCCACTTCGCCCCTCAATATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCCACAGGTGTGGTCTTTaGAGGTGGAGGGAAGGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VLKTLRTFREDITFLARVHRCGL*RWREGS Trigger: AGACCCTTCCCTCCACCTCCAAAGACCACACCTGTG...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAGTGAAGCACCCAGGATaGCTCCTAAAATGGCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLVKHPG*LLKWLQ Trigger: TTGGAGCCATTTTAGGAGCCATCCTGGGTGCTTCAC...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTCTCCCCCTTCTGGCATaGATGAATCACTCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLILPLLA*MNHSQL Trigger: CAGCTGTGAGTGATTCATCCATGCCAGAAGGGGGAG...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
||
| CDS-3UTR TCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTTGCGTCTGCTGTGGATaGGTTCAAAGGCAACTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLICVCCG*VQRQLG Trigger: TCCAAGTTGCCTTTGAACTCATCCACAGCAGACGCA...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR GCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATAGGAATGCCATCTTaGAGGCTTTCTCCCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLIGMPS*RLSPPS Trigger: AGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTAT...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
||
| CDS-3UTR CCA 90 bp | TGTGTTTGCATGCTAACTCTCGTTGCTGTTTTCCCTGTGCTCCATGCCTCTAGAAGTTCAAAGGCAACTTaGAAACAAAGCCCTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: CVCMLTLVAVFPVLHASRSSKAT*KQSPEP Trigger: TGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACT...TCTAGAGGCATGGAGCACAGGGAAAACAGCAACGAGAGTTAGCATGCAAACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | GGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACACACAGGTGTGGTCTTTaGAGGTGGAGGGAAGGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: GVSMFDCSAKWLLWESRTHRCGL*RWREGS Trigger: AGACCCTTCCCTCCACCTCCAAAGACCACACCTGTG...TGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TGTGTTTGCATGCTAACTCTCGTTGCTGTTTTCCCTGTGCTCCATGCCTCTAGAGGATGGCTCCTAAAATaGCTCCAAATACTATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: CVCMLTLVAVFPVLHASRGWLLK*LQILFL Trigger: CAGGAATAGTATTTGGAGCCATTTTAGGAGCCATCC...TCTAGAGGCATGGAGCACAGGGAAAACAGCAACGAGAGTTAGCATGCAAACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTGTGAAGCACCCAGGATaGCTCCTAAAATGGCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLIVKHPG*LLKWLQ Trigger: TTGGAGCCATTTTAGGAGCCATCCTGGGTGCTTCAC...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR TCA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCTGCGTCTGCTGTGGATaGGTTCAAAGGCAACTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: VLKTLRTFREDITFLARVCVCCG*VQRQLG Trigger: TCCAAGTTGCCTTTGAACTCATCCACAGCAGACGCA...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTGAGGAACAGAATATGTaGAGGAGGGTCTGGAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: KGQNGDELVPSAAIFLLIEEQNM*RRVWNS Trigger: AGAGTTCCAGACCCTCCTCCACATATTCTGTTCCTC...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TGGTTGTATAACACATGCTTCAGCCCAGCTGAAGACTGCAAGAAAAGAAAGCTTGAGGAACAGAATATGTaGAGGAGGGTCTGGAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: WLYNTCFSPAEDCKKRKLEEQNM*RRVWNS Trigger: AGAGTTCCAGACCCTCCTCCACATATTCTGTTCCTC...AAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCATGTGTTATACAACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAAGTTCAAAGGCAACTTaGAAACAAAGCCCTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLSSKAT*KQSPEP Trigger: TGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACT...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAGGATGGCTCCTAAAATaGCTCCAAATACTATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLGWLLK*LQILFL Trigger: CAGGAATAGTATTTGGAGCCATTTTAGGAGCCATCC...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TGGTTGTATAACACATGCTTCAGCCCAGCTGAAGACTGCAAGAAAAGAAAGCTTGGATGGCTCCTAAAATaGCTCCAAATACTATTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: WLYNTCFSPAEDCKKRKLGWLLK*LQILFL Trigger: CAGGAATAGTATTTGGAGCCATTTTAGGAGCCATCC...AAGCTTTCTTTTCTTGCAGTCTTCAGCTGGGCTGAAGCATGTGTTATACAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TCAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAACTCCCCCTTCTGGCATaGATGAATCACTCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SEPNILPYSISDFETTQKLPLLA*MNHSQL Trigger: CAGCTGTGAGTGATTCATCCATGCCAGAAGGGGGAG...TTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111016.9 |
||
| 3UTR CAA 72 bp | AGTTTTGGTTCCCAGATTTTGTGTGAAGAACGGTTATaGTTATCAGTCAGCGCTGCCATGGTAATGTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFGSQILCEERL*LSVSAAMVMLH Trigger: ATGCAACATTACCATGGCAGCGCTGACTGATAACAATAACCGTTCTTCACACAAAATCTGGGAACCAAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR TCA 90 bp | CAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAAATGCGTCTGCTGTGGATaGGTTCAAAGGCAACTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: QNQTFCHIVFLTLKQPRKCVCCG*VQRQLG Trigger: TCCAAGTTGCCTTTGAACTCATCCACAGCAGACGCA...TTTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR TCA 90 bp | ATAGGACCTAGGGAGAAACCACAGTACCTAATGCTAACAATAACTTCTATTTTAGCGCCGATGGGAAAATaGATCTGTTTTCCGTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: IGPREKPQYLMLTITSILAPMGK*ICFPLS Trigger: GGACAACGGAAAACAGATTCATTTTCCCATCGGCGC...TAAAATAGAAGTTATTGTTAGCATTAGGTACTGTGGTTTCTCCCTAGGTCCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR GCA 90 bp | AGACAAGCTTTTCGTTCTTATTGCCTTAATTTCTCAGAACCAAACATTCTGCCAATAGGAATGCCATCTTaGAGGCTTTCTCCCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RQAFRSYCLNFSEPNILPIGMPS*RLSPPS Trigger: AGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTAT...TGGCAGAATGTTTGGTTCTGAGAAATTAAGGCAATAAGAACGAAAAGCTTGTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111016.9 |
||
| CDS-3UTR CCA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAAGTTACATTTCTTCGTaGATTTTGTTTCTGAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LKGQNGDELVPSAAIFLLSYISS*ILFLRP Trigger: AGGCCTCAGAAACAAAATCCACGAAGAAATGTAACT...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTTTATATTGAGGGGCGAAGTGGAGGTATAGCATCCATAGGAATGCCATCTTGCAGTTACATTTCTTCGTaGATTTTGTTTCTGAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: FYIEGRSGGIASIGMPSCSYISS*ILFLRP Trigger: AGGCCTCAGAAACAAAATCCACGAAGAAATGTAACT...GCAAGATGGCATTCCTATGGATGCTATACCTCCACTTCGCCCCTCAATATAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTCAATCGAAGACACTTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGGTGAAGCACCCAGGATaGCTCCTAAAATGGCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: FNRRHLLTIRVLYFITFLVKHPG*LLKWLQ Trigger: TTGGAGCCATTTTAGGAGCCATCCTGGGTGCTTCAC...CAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAAGTGTCTTCGATTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | AGACAAGCTTTTCGTTCTTATTGCCTTAATTTCTCAGAACCAAACATTCTGCCAAGTTCAAAGGCAACTTaGAAACAAAGCCCTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: RQAFRSYCLNFSEPNILPSSKAT*KQSPEP Trigger: TGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACT...TGGCAGAATGTTTGGTTCTGAGAAATTAAGGCAATAAGAACGAAAAGCTTGTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TTCAGGGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAAGTTACATTTCTTCGTaGATTTTGTTTCTGAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: FRVLVCLTVVQNGFFGNLSYISS*ILFLRP Trigger: AGGCCTCAGAAACAAAATCCACGAAGAAATGTAACT...TAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACCCTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CCA 90 bp | TCAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAACTGGGTTGTAGTAACTaGTTCGTTTCTGTCATCATA | + |
|
Preference number: 4 (lower is better) Translates to: SEPNILPYSISDFETTQKLGCSN*FVSVII Trigger: TATGATGACAGAAACGAACCAGTTACTACAACCCAG...TTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111017.9 |
||
| CDS TCA 90 bp | GCGTCTGCTGTGGATGAGTTCAAAGGCAACTTGGAAACAAAGCCCTaGACCAAGGGAGGAACAGAATATGTGGAGGAGGGTCTGGAACTC | + |
|
Preference number: 5 (lower is better) Translates to: ASAVDEFKGNLETKP*TKGGTEYVEEGLEL Trigger: GAGTTCCAGACCCTCCTCCACATATTCTGTTCCTCCCTTGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACTCATCCACAGCAGACGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS GCA 90 bp | ATTGAGGGGCGAAGTGGAGGTATAGCATCCATAGGAATGCCATCTTaGAGGCTTTCTCCCCCTTCTGGCATGGATGAATCACTCACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: IEGRSGGIASIGMPS*RLSPPSGMDESLTA Trigger: AGCTGTGAGTGATTCATCCATGCCAGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATGGATGCTATACCTCCACTTCGCCCCTCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
||
| CDS CCA 90 bp | CCATTCAGTAGGTTCAGCTGTGAAAGGGGTCACAGGTGTGGTCTTTaGAGGTGGAGGGAAGGGTCTTACTGTAGTGGAAATATCTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: PFSRFSCERGHRCGL*RWREGSYCSGNIFR Trigger: CCTGAAGATATTTCCACTACAGTAAGACCCTTCCCTCCACCTCCAAAGACCACACCTGTGACCCCTTTCACAGCTGAACCTACTGAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CAA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTATCACAGGTGTGGTCTTaGGAGGTGGAGGGAAGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LKGQNGDELVPSAAIFLLSQVWS*EVEGRV Trigger: GACCCTTCCCTCCACCTCCAAAGACCACACCTGTGA...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS CCA 90 bp | CCTGTAAAGGATTTGCGTCTGCTGTGGATGAGTTCAAAGGCAACTTaGAAACAAAGCCCTGAACCAAGGGAGGAACAGAATATGTGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PVKDLRLLWMSSKAT*KQSPEPREEQNMWR Trigger: CCTCCACATATTCTGTTCCTCCCTTGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACTCATCCACAGCAGACGCAAATCCTTTACAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CAA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTCATAGGAATGCCATCTaGCAGGCTTTCTCCCCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KGQNGDELVPSAAIFLLIHRNAI*QAFSPF Trigger: GAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATG...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
||
| CDS-3UTR CAA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTACCAGCAAAGTTGTCATaGTTTGTGGGGAGCCATTCA | + |
|
Preference number: 5 (lower is better) Translates to: LKGQNGDELVPSAAIFLLPAKLS*FVGSHS Trigger: TGAATGGCTCCCCACAAACAATGACAACTTTGCTGG...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
||
| CDS-3UTR CAA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCCATAGGAATGCCATCTaGCAGGCTTTCTCCCCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VLKTLRTFREDITFLARVHRNAI*QAFSPF Trigger: GAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATG...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111016.9 |
||
| CDS TCA 90 bp | CATAGGAATGCCATCTTGCAGGCTTTCTCCCCCTTCTGGCATGGATaGATCACTCACAGCTGGGTTGTAGTAACTAGAATTTCCAAAATT | + |
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Preference number: 5 (lower is better) Translates to: HRNAILQAFSPFWHG*ITHSWVVVTRISKI Trigger: AATTTTGGAAATTCTAGTTACTACAACCCAGCTGTGAGTGATTCATCCATGCCAGAAGGGGGAGAAAGCCTGCAAGATGGCATTCCTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
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| CDS-3UTR CAA 90 bp | TCAGAACCAAACATTCTGCCATATAGTATTTCTGACTTTGAAACAACCCAGAAATCACAGGTGTGGTCTTaGGAGGTGGAGGGAAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: SEPNILPYSISDFETTQKSQVWS*EVEGRV Trigger: GACCCTTCCCTCCACCTCCAAAGACCACACCTGTGA...TTTCTGGGTTGTTTCAAAGTCAGAAATACTATATGGCAGAATGTTTGGTTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | AAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAATTCCAGCAAAGTTGTCATaGTTTGTGGGGAGCCATTCA | + |
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Preference number: 5 (lower is better) Translates to: KGQNGDELVPSAAIFLLIPAKLS*FVGSHS Trigger: TGAATGGCTCCCCACAAACAATGACAACTTTGCTGG...AATTAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTAGTAAAACCAGCAAAGTaGTCATTGTTTGTGGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: LKGQNGDELVPSAAIFLLVKPAK*SLFVGS Trigger: GCTCCCCACAAACAATGACAACTTTGCTGGTTTTAC...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | TTGAAAGGTCAAAATGGAGATGAACTTGTGCCCTCTGCAGCCATCTTTCTCCTACTGTTCATTGTGTCATaGTCCAAAGACCAAGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: LKGQNGDELVPSAAIFLLLFIVS*SKDQVK Trigger: CTTTACTTGGTCTTTGGACAATGACACAATGAACAG...TAGGAGAAAGATGGCTGCAGAGGGCACAAGTTCATCTCCATTTTGACCTTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCTCTTCTATCGTTACGTGTCCAAATGATGATGTGTTTGCATGCTAACCCAGCAAAGTTGTCATaGTTTGTGGGGAGCCATTCA | + |
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Preference number: 5 (lower is better) Translates to: IKSLLSLRVQMMMCLHANPAKLS*FVGSHS Trigger: TGAATGGCTCCCCACAAACAATGACAACTTTGCTGG...GTTAGCATGCAAACACATCATCATTTGGACACGTAACGATAGAAGAGACTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | TTCAGGGTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGTAAAACCAGCAAAGTaGTCATTGTTTGTGGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: FRVLVCLTVVQNGFFGNLVKPAK*SLFVGS Trigger: GCTCCCCACAAACAATGACAACTTTGCTGGTTTTAC...TAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACACCCTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | GTTCTTAAAACTTTGAGGACTTTCAGGGAAGATATCACTTTCCTGGCTAGAGTCCTGTTCATTGTGTCATaGTCCAAAGACCAAGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: VLKTLRTFREDITFLARVLFIVS*SKDQVK Trigger: CTTTACTTGGTCTTTGGACAATGACACAATGAACAG...GACTCTAGCCAGGAAAGTGATATCTTCCCTGAAAGTCCTCAAAGTTTTAAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | GTGTTAGTATGTTTGACTGTAGTGCAAAATGGCTTCTTTGGGAATCTAGAACAAGTAAAACCAGCAAAGTaGTCATTGTTTGTGGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: VLVCLTVVQNGFFGNLEQVKPAK*SLFVGS Trigger: GCTCCCCACAAACAATGACAACTTTGCTGGTTTTAC...TTGTTCTAGATTCCCAAAGAAGCCATTTTGCACTACAGTCAAACATACTAACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS-3UTR CAA 90 bp | TTCAATCGAAGACACTTGCTCACTATCAGAGTTCTCTATTTTATAACTTTCCTGCTGTTCATTGTGTCATaGTCCAAAGACCAAGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: FNRRHLLTIRVLYFITFLLFIVS*SKDQVK Trigger: CTTTACTTGGTCTTTGGACAATGACACAATGAACAG...CAGGAAAGTTATAAAATAGAGAACTCTGATAGTGAGCAAGTGTCTTCGATTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS CCA 72 bp | AGGTTCAGCTGTGAAAGGGGTCACAGGTGTGGTCTTTaGAGGTGGAGGGAAGGGTCTTACTGTAGTGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: RFSCERGHRCGL*RWREGSYCSGN Trigger: ATTTCCACTACAGTAAGACCCTTCCCTCCACCTCCAAAGACCACACCTGTGACCCCTTTCACAGCTGAACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS TCA 72 bp | GTGGATGAGTTCAAAGGCAACTTGGAAACAAAGCCCTaGACCAAGGGAGGAACAGAATATGTGGAGGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: VDEFKGNLETKP*TKGGTEYVEEG Trigger: ACCCTCCTCCACATATTCTGTTCCTCCCTTGGTTCAGGGCTTTGTTTCCAAGTTGCCTTTGAACTCATCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS TCA 72 bp | GCCATCTTGCAGGCTTTCTCCCCCTTCTGGCATGGATaGATCACTCACAGCTGGGTTGTAGTAACTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: AILQAFSPFWHG*ITHSWVVVTRI Trigger: AATTCTAGTTACTACAACCCAGCTGTGAGTGATTCATCCATGCCAGAAGGGGGAGAAAGCCTGCAAGATGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 |
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| CDS CCA 72 bp | AATGTTCGGAGACCTGTAAAGGATTTGCGTCTGCTGTaGATGAGTTCAAAGGCAACTTGGAAACAAAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: NVRRPVKDLRLL*MSSKATWKQSP Trigger: AGGGCTTTGTTTCCAAGTTGCCTTTGAACTCATCCACAGCAGACGCAAATCCTTTACAGGTCTCCGAACATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS TCA 72 bp | TGTGTCATTGTCCAAAGACCAAGTAAAGTTTTCTGGTaGTGGGGAATTTGTAGAATTGGAATGTTCGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: CVIVQRPSKVFW*WGICRIGMFGD Trigger: GTCTCCGAACATTCCAATTCTACAAATTCCCCATCACCAGAAAACTTTACTTGGTCTTTGGACAATGACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS CAA 72 bp | CAAGTAAAGTTTTCTGGTGATGGGGAATTTGTAGAATaGGAATGTTCGGAGACCTGTAAAGGATTTGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: QVKFSGDGEFVE*ECSETCKGFAS Trigger: AGACGCAAATCCTTTACAGGTCTCCGAACATTCCAATTCTACAAATTCCCCATCACCAGAAAACTTTACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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| CDS CAA 72 bp | GTAGTGGAAATATCTTCAGGACTGTTCATTGTGTCATaGTCCAAAGACCAAGTAAAGTTTTCTGGTGATGGG | + |
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Preference number: 6 (lower is better) Translates to: VVEISSGLFIVS*SKDQVKFSGDG Trigger: CCCATCACCAGAAAACTTTACTTGGTCTTTGGACAATGACACAATGAACAGTCCTGAAGATATTTCCACTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000090332.5 ENSMUST00000111016.9 ENSMUST00000111017.9 |
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