Pregenerated sensors for MTX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027099Ensembl transcript IDs: ENSMUST00000028511.8
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATaGTATGCTGCCCCACAACCTACAGTGGATGACCTCACACACATG | + |
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Preference number: 1 (lower is better) Translates to: AAGKGVTFLWEEGSR*YAAPQPTVDDLTHM Trigger: CATGTGTGTGAGGTCATCCACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 90 bp | GGCGAAGGGTTCCTCCCCATGTGTCACTCCTCGAAGAGAAGCCAATaGCAATTACTGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAA | + |
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Preference number: 1 (lower is better) Translates to: GEGFLPMCHSSKRSQ*QLLAAGKGVTFLWE Trigger: TTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATGGGGAGGAACCCTTCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 90 bp | TCCATGAAACAGTTCTTTCATCCCAGCCCAGCCCTAAAGCAACGCTaGTTAACGCAGTTTAGATTAAGACAGTCTGAGGCTCACTGGGTG | + |
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Preference number: 1 (lower is better) Translates to: SMKQFFHPSPALKQR*LTQFRLRQSEAHWV Trigger: CACCCAGTGAGCCTCAGACTGTCTTAATCTAAACTGCGTTAACCAGCGTTGCTTTAGGGCTGGGCTGGGATGAAAGAACTGTTTCATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 90 bp | CGCTGTTTGCTCTCTCCAGAGTACTTACTTTACACAACCCAACCCTaGCTGTTTGTTGAATGGACTAAAATAAGCACTCTAGGGACTGGA | + |
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Preference number: 1 (lower is better) Translates to: RCLLSPEYLLYTTQP*LFVEWTKISTLGTG Trigger: TCCAGTCCCTAGAGTGCTTATTTTAGTCCATTCAACAAACAGCCAGGGTTGGGTTGTGTAAAGTAAGTACTCTGGAGAGAGCAAACAGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR TCA 90 bp | TTCTCAGGTCCAGACCCAGCACCTGTACTGCAGCTCACAATTACCTaGAACTTCAGTTACAGTGACTTGGTATACATACAAACATGCAGA | + |
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Preference number: 1 (lower is better) Translates to: FSGPDPAPVLQLTIT*NFSYSDLVYIQTCR Trigger: TCTGCATGTTTGTATGTATACCAAGTCACTGTAACTGAAGTTTCAGGTAATTGTGAGCTGCAGTACAGGTGCTGGGTCTGGACCTGAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR TCA 90 bp | GAGAGAAGCCCTGTCTCAATGGAGAGAGAAGTGTTAATTTGGAGTTaGAATACAAATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGA | + |
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Preference number: 1 (lower is better) Translates to: ERSPVSMEREVLIWS*NTNDKKDSVSMEGR Trigger: TCGCCCCTCCATGCTGACAGAGTCTTTCTTATCATTTGTATTTCAACTCCAAATTAACACTTCTCTCTCCATTGAGACAGGGCTTCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCAGTCTGAGGCTCACTaGGTGACCCACTGGCACACT | + |
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Preference number: 2 (lower is better) Translates to: WLLGRESLFFGKREADGMQSEAH*VTHWHT Trigger: AGTGTGCCAGTGGGTCACCCAGTGAGCCTCAGACTG...CATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTGAGGGAGGGAGGTACTaGGAGGAGTGGAGGATAGAT | + |
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Preference number: 2 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSEGGRY*EEWRID Trigger: ATCTATCCTCCACTCCTCCCAGTACCTCCCTCCCTC...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CAA 90 bp | AAGCCAATGGCAATTACTGGCTGCTGGGAAGGGAGTCACTTTTCTTaGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGT | + |
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Preference number: 2 (lower is better) Translates to: KPMAITGCWEGSHFS*GRGKQMVCCPTTYS Trigger: ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCAGTAATTGCCATTGGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGGAAGTTGGGAGGAGATaGGATATGTGGGGGAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGEVGRR*DMWGRG Trigger: CCCTCTCCCCCACATATCTCATCTCCTCCCAACTTC...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | AATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGAAGGGTTCCTCCCCATGTGACAACCTACAGTGGATaGCCTCACACACATGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: NDKKDSVSMEGRRVPPHVTTYSG*PHTHEQ Trigger: TTGCTCATGTGTGTGAGGTCATCCACTGTAGGTTGT...CACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CCA 90 bp | ATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGAAGGGTTCCTCCCCATGTGTGGAGTCACTTTTCTTTaGGAAGAGGGAAGCAGATGG | + |
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Preference number: 2 (lower is better) Translates to: MIRKTLSAWRGEGFLPMCGVTFL*EEGSRW Trigger: CCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCC...ACACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CCA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGAGAGGCAGAGGCAGGTaGATCTCTGAGTTTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGRGRGR*ISEFEA Trigger: GGCCTCAAACTCAGAGATCCACCTGCCTCTGCCTCT...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTGGATCAGTGGTTTTGGTTTTaGGATCCTGCAACTACTACC | + |
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Preference number: 2 (lower is better) Translates to: FLWEEGSRWYAAPQPTVDQWFWF*DPATTT Trigger: GGTAGTAGTTGCAGGATCTCAAAACCAAAACCACTG...ATCCACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGTTAAAGACAGGAAGTTaGGAGGAGATGAGATATGTG | + |
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Preference number: 2 (lower is better) Translates to: HVSLLEEKPMAITGCWEGLKTGS*EEMRYV Trigger: CACATATCTCATCTCCTCCCAACTTCCTGTCTTTAA...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGCTTAGTGTTTGCATATaGATTCCCATCAATACTCCT | + |
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Preference number: 2 (lower is better) Translates to: HVSLLEEKPMAITGCWEGLSVCI*IPINTP Trigger: AGGAGTATTGATGGGAATTCATATGCAAACACTAAG...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGATCATCACGTGTAACTaGACAGAAAACACTGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: HVSLLEEKPMAITGCWEGIITCN*TENTGK Trigger: TTTTCCAGTGTTTTCTGTTCAGTTACACGTGATGAT...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | ATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGAAGGGTTCCTCCCCATGTGTCCATCAATACTCCTTTaGAAACTACCTGTTCTTTAC | + |
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Preference number: 2 (lower is better) Translates to: MIRKTLSAWRGEGFLPMCPSILL*KLPVLY Trigger: GTAAAGAACAGGTAGTTTTCAAAGGAGTATTGATGG...ACACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCAACCCTGGCTGTTTGTTGAATGGACTAAAATAAGCACTCTAGGGACTGGACAGCTCACAATTACCTaGAACTTCAGTTACAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: TQPWLFVEWTKISTLGTGQLTIT*NFSYSD Trigger: GTCACTGTAACTGAAGTTTCAGGTAATTGTGAGCTG...TCCAGTCCCTAGAGTGCTTATTTTAGTCCATTCAACAAACAGCCAGGGTTGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR TCA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGAAGTGTTCATCTCCATaGAACAGTTCTTTCATCCCA | + |
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Preference number: 2 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGKCSSP*NSSFIP Trigger: TGGGATGAAAGAACTGTTTCATGGAGATGAACACTT...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR GCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTTTGGTTTTGAGATCCTaGAACTACTACCATATTGTT | + |
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Preference number: 2 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSLVLRS*NYYHIV Trigger: AACAATATGGTAGTAGTTGCAGGATCTCAAAACCAA...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CAA 90 bp | GAGCTACTACTGTGGATTAATTCTGATTTAAATTTCACACGCTGTTaGCTCTCTCCAGAGTACTTACTTTACACAACCCAACCCTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: ELLLWINSDLNFTRC*LSPEYLLYTTQPWL Trigger: CAGCCAGGGTTGGGTTGTGTAAAGTAAGTACTCTGGAGAGAGCAAACAGCGTGTGAAATTTAAATCAGAATTAATCCACAGTAGTAGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | GCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCAACCTaGTCTATGGAGAGAAGCCCTGTCTCAATGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: AEAGGSLSLRPT*SMERSPVSMER Trigger: TCTCTCCATTGAGACAGGGCTTCTCTCCATAGACCAGGTTGGCCTCAAACTCAGAGATCCACCTGCCTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR GCA 72 bp | TCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTaGTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: SLLEEKPMAITG*WEGSHFSLGRG Trigger: CCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | CTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTaGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LLEEKPMAITGC*EGSHFSLGRGK Trigger: CTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | TTCCTCCCCATGTGTCACTCCTCGAAGAGAAGCCAATaGCAATTACTGGCTGCTGGGAAGGGAGTCACTTTT | + |
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Preference number: 3 (lower is better) Translates to: FLPMCHSSKRSQ*QLLAAGKGVTF Trigger: AAAAGTGACTCCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATGGGGAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR GCA 72 bp | AGCTGCCATTCTCAGGTCCAGACCCAGCACCTGTACTaGAGCTCACAATTACCTGAAACTTCAGTTACAGTG | + |
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Preference number: 3 (lower is better) Translates to: SCHSQVQTQHLY*SSQLPETSVTV Trigger: CACTGTAACTGAAGTTTCAGGTAATTGTGAGCTGCAGTACAGGTGCTGGGTCTGGACCTGAGAATGGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | TTAACGCAGTTTAGATTAAGACAGTCTGAGGCTCACTaGGTGACCCACTGGCACACTTCCTCAGTGTCCCTT | + |
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Preference number: 3 (lower is better) Translates to: LTQFRLRQSEAH*VTHWHTSSVSL Trigger: AAGGGACACTGAGGAAGTGTGCCAGTGGGTCACCCAGTGAGCCTCAGACTGTCTTAATCTAAACTGCGTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CAA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGACAGTGGTTTTGGTTTaGAGATCCTGCAACTACTAC | + |
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Preference number: 3 (lower is better) Translates to: HVSLLEEKPMAITGCWEGTVVLV*RSCNYY Trigger: GTAGTAGTTGCAGGATCTCAAAACCAAAACCACTGT...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | CAGTTCTTTCATCCCAGCCCAGCCCTAAAGCAACGCTaGTTAACGCAGTTTAGATTAAGACAGTCTGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: QFFHPSPALKQR*LTQFRLRQSEA Trigger: AGCCTCAGACTGTCTTAATCTAAACTGCGTTAACCAGCGTTGCTTTAGGGCTGGGCTGGGATGAAAGAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | GTTGAAATACAAATGATAAGAAAGACTCTGTCAGCATaGAGGGGCGAAGGGTTCCTCCCCATGTGTCACTCC | + |
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Preference number: 3 (lower is better) Translates to: VEIQMIRKTLSA*RGEGFLPMCHS Trigger: GGAGTGACACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCATTTGTATTTCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CCA 72 bp | CAGAACCGTGGCCCCAGGCAACCAGAGCTACTACTGTaGATTAATTCTGATTTAAATTTCACACGCTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: QNRGPRQPELLL*INSDLNFTRCL Trigger: CAAACAGCGTGTGAAATTTAAATCAGAATTAATCCACAGTAGTAGCTCTGGTTGCCTGGGGCCACGGTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR TCA 72 bp | CCAGACCCAGCACCTGTACTGCAGCTCACAATTACCTaGAACTTCAGTTACAGTGACTTGGTATACATACAA | + |
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Preference number: 3 (lower is better) Translates to: PDPAPVLQLTIT*NFSYSDLVYIQ Trigger: TTGTATGTATACCAAGTCACTGTAACTGAAGTTTCAGGTAATTGTGAGCTGCAGTACAGGTGCTGGGTCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CAA 90 bp | ACCCAACCCTGGCTGTTTGTTGAATGGACTAAAATAAGCACTCTAGGGACTGGATTTAAAGACAGGAAGTaGGGAGGAGATGAGATATGT | + |
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Preference number: 3 (lower is better) Translates to: TQPWLFVEWTKISTLGTGFKDRK*GGDEIC Trigger: ACATATCTCATCTCCTCCCAACTTCCTGTCTTTAAA...TCCAGTCCCTAGAGTGCTTATTTTAGTCCATTCAACAAACAGCCAGGGTTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR-3UTR CAA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGCCCATCAATACTCCTTaGAAAACTACCTGTTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGPINTP*KTTCSL Trigger: TAAAGAACAGGTAGTTTTCAAAGGAGTATTGATGGG...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR TCA 72 bp | ACTGCAGCTCACAATTACCTGAAACTTCAGTTACAGTaGCTTGGTATACATACAAACATGCAGACAAGGACT | + |
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Preference number: 3 (lower is better) Translates to: TAAHNYLKLQLQ*LGIHTNMQTRT Trigger: AGTCCTTGTCTGCATGTTTGTATGTATACCAAGTCACTGTAACTGAAGTTTCAGGTAATTGTGAGCTGCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR TCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGCTCTGGGAAAGGGCTTaGCAGCACTGGTCTACATCT | + |
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Preference number: 4 (lower is better) Translates to: HVSLLEEKPMAITGCWEGLWERA*QHWSTS Trigger: AGATGTAGACCAGTGCTGTCAAGCCCTTTCCCAGAG...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR TCA 90 bp | ATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGAAGGGTTCCTCCCCATGTGTCCCTACACACCACTTTaGCAGGCAGATTACACATCT | + |
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Preference number: 4 (lower is better) Translates to: MIRKTLSAWRGEGFLPMCPYTPL*QADYTS Trigger: AGATGTGTAATCTGCCTGTCAAAGTGGTGTGTAGGG...ACACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGATCTGCAAAAATGCCTaGACAGCAAGAGATGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: HVSLLEEKPMAITGCWEGICKNA*TARDAA Trigger: TGCAGCATCTCTTGCTGTGCAGGCATTTTTGCAGAT...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTGCTTCATCACACCACTaGAGATACAGCTCTGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSASSHH*RYSSAV Trigger: GACTGCAGAGCTGTATCTCCAGTGGTGTGATGAAGC...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR TCA 90 bp | ATCTCTGAGTTTGAGGCCAACCTGGTCTATGGAGAGAAGCCCTGTCTCAATGGATATTGGGCCAAGTTCTaGCACTACTTGATTTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: ISEFEANLVYGEKPCLNGYWAKF*HYLISH Trigger: GTGGGAAATCAAGTAGTGTCAGAACTTGGCCCAATA...TCCATTGAGACAGGGCTTCTCTCCATAGACCAGGTTGGCCTCAAACTCAGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | CATGTGTCACTCCTCGAAGAGAAGCCAATGGCAATTACTGGCTGCTGGGAAGGGCACAGCAAGAGATGCTaGATTGTCAGAAAGCAAAAT | + |
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Preference number: 4 (lower is better) Translates to: HVSLLEEKPMAITGCWEGHSKRC*IVRKQN Trigger: ATTTTGCTTTCTGACAATGCAGCATCTCTTGCTGTG...CCCTTCCCAGCAGCCAGTAATTGCCATTGGCTTCTCTTCGAGGAGTGACACATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTACACATCTGCAAAAATaGCTGCACAGCAAGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSTHLQK*LHSKRC Trigger: GCATCTCTTGCTGTGCAGGCATTTTTGCAGATGTGT...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | TGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCCATCACTAAGAGAATaGCCCTTGGCTTTAACAAAT | + |
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Preference number: 4 (lower is better) Translates to: WLLGRESLFFGKREADGMPSLRE*PLALTN Trigger: ATTTGTTAAAGCCAAGGGCCATTCTCTTAGTGATGG...CATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | AATGATAAGAAAGACTCTGTCAGCATGGAGGGGCGAAGGGTTCCTCCCCATGTGAGAATGGTATACAAATaGCCAAAAACCAGAGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: NDKKDSVSMEGRRVPPHVRMVYK*PKTRAS Trigger: TGACGCTCTGGTTTTTGGCCATTTGTATACCATTCT...CACATGGGGAGGAACCCTTCGCCCCTCCATGCTGACAGAGTCTTTCTTATCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | TGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGTTCATTTCTGCTTTTTaGACTTCATCCAACCCATCA | + |
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Preference number: 4 (lower is better) Translates to: WLLGRESLFFGKREADGMFISAF*TSSNPS Trigger: TGATGGGTTGGATGAAGTCCAAAAAGCAGAAATGAA...CATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTCTTATTGAAGAAGTATaGTTGTGTTCCCAGTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSLIEEV*LCSQSL Trigger: CAGAGACTGGGAACACAACCATACTTCTTCAATAAG...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | TTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTGGATTTGGCTTTAACAAATTaGACTATTGGGCCAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FLWEEGSRWYAAPQPTVDLALTN*TIGPSS Trigger: AGAACTTGGCCCAATAGTCCAATTTGTTAAAGCCAA...ATCCACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTTCAAGTTCAGTAGGTTaGTTATTGAAGAAGTATGGT | + |
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Preference number: 4 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSSSSVG*LLKKYG Trigger: ACCATACTTCTTCAATAAGCAACCTACTGAACTTGA...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGAGAAAGCCAGGAGGTTaGTATAGTTTTTCACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGRKPGG*YSFSPS Trigger: AGAAGGTGAAAAACTATAGCAACCTCCTGGCTTTCT...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR GCA 90 bp | GAGATAACTACCACCATTAAGTGTTCTGTGAAGATTAAGTGTGTTAGAAATGCTCTGGAGATACAGCTCTaGAGTCAGCAGCATATTGTT | + |
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Preference number: 4 (lower is better) Translates to: EITTTIKCSVKIKCVRNALEIQL*SQQHIV Trigger: AACAATATGCTGCTGACTGCAGAGCTGTATCTCCAG...AGCATTTCTAACACACTTAATCTTCACAGAACACTTAATGGTGGTAGTTATCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CCA 90 bp | GAGATAACTACCACCATTAAGTGTTCTGTGAAGATTAAGTGTGTTAGAAATGCTACATCTTCTAAGACCTaGTCCAGAGTCTTGTTACCC | + |
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Preference number: 4 (lower is better) Translates to: EITTTIKCSVKIKCVRNATSSKT*SRVLLP Trigger: GGGTAACAAGACTCTGGACCAGGTCTTAGAAGATGT...AGCATTTCTAACACACTTAATCTTCACAGAACACTTAATGGTGGTAGTTATCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CAA 72 bp | AGAAGGCAGTATCAAAATACTGTAACTCTCAACATATaGGTAACAGATCTGATTCCTCACAGCATCATCACG | + |
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Preference number: 4 (lower is better) Translates to: RRQYQNTVTLNI*VTDLIPHSIIT Trigger: CGTGATGATGCTGTGAGGAATCAGATCTGTTACCAATATGTTGAGAGTTACAGTATTTTGATACTGCCTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| 3UTR CAA 72 bp | CTGTGGATTAATTCTGATTTAAATTTCACACGCTGTTaGCTCTCTCCAGAGTACTTACTTTACACAACCCAA | + |
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Preference number: 4 (lower is better) Translates to: LWINSDLNFTRC*LSPEYLLYTTQ Trigger: TTGGGTTGTGTAAAGTAAGTACTCTGGAGAGAGCAAACAGCGTGTGAAATTTAAATCAGAATTAATCCACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | TGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGTTGCTCCCCTCTCAGTaGCTGATACAAGGTCGCATT | + |
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Preference number: 5 (lower is better) Translates to: WLLGRESLFFGKREADGMLLPSQ*LIQGRI Trigger: AATGCGACCTTGTATCAGCAACTGAGAGGGGAGCAA...CATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | GCAGTGGTGGCGCACATCTTTAAACCAAACACAAAGAGGCAGAGGCAGGTGGATGTCAGAAAGCAAAATTaGCTCCCCTCTCAGTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: AVVAHIFKPNTKRQRQVDVRKQN*LPSQLL Trigger: CAGCAACTGAGAGGGGAGCAAATTTTGCTTTCTGAC...ATCCACCTGCCTCTGCCTCTTTGTGTTTGGTTTAAAGATGTGCGCCACCACTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | TGGCTGCTGGGAAGGGAGTCACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTAAGAGAATGGCCCTaGGCTTTAACAAATTGGACT | + |
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Preference number: 5 (lower is better) Translates to: WLLGRESLFFGKREADGMLREWP*ALTNWT Trigger: AGTCCAATTTGTTAAAGCCAAGGGCCATTCTCTTAG...CATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTGACTCCCTTCCCAGCAGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | ATCTCTGAGTTTGAGGCCAACCTGGTCTATGGAGAGAAGCCCTGTCTCAATGGAATTGAAGAAGTATGGTaGTGTTCCCAGTCTCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: ISEFEANLVYGEKPCLNGIEEVW*CSQSLG Trigger: TCCCAGAGACTGGGAACACAACCATACTTCTTCAAT...TCCATTGAGACAGGGCTTCTCTCCATAGACCAGGTTGGCCTCAAACTCAGAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | TTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTGGATGTCAAGTTCAGTAGGTaGCTTATTGAAGAAGTATGG | + |
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Preference number: 5 (lower is better) Translates to: FLWEEGSRWYAAPQPTVDVKFSR*LIEEVW Trigger: CCATACTTCTTCAATAAGCAACCTACTGAACTTGAC...ATCCACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | CACTTTTCTTTGGGAAGAGGGAAGCAGATGGTATGCTGCCCCACAACCTACAGTTTCATCGCTGGTCAATaGTGTGGTAAGAATGGTATA | + |
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Preference number: 5 (lower is better) Translates to: HFSLGRGKQMVCCPTTYSFIAGQ*CGKNGI Trigger: TATACCATTCTTACCACACAATTGACCAGCGATGAA...ACTGTAGGTTGTGGGGCAGCATACCATCTGCTTCCCTCTTCCCAAAGAAAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS GCA 90 bp | TGCCCTACACACCACTTTGACAGGCAGATTACACATCTGCAAAAATaGCTGCACAGCAAGAGATGCTGCATTGTCAGAAAGCAAAATTTG | + |
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Preference number: 5 (lower is better) Translates to: CPTHHFDRQITHLQK*LHSKRCCIVRKQNL Trigger: CAAATTTTGCTTTCTGACAATGCAGCATCTCTTGCTGTGCAGGCATTTTTGCAGATGTGTAATCTGCCTGTCAAAGTGGTGTGTAGGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | ACAACAACAAAAACTGAAGTGGTGGCAAAGGCCTATAACCCCAGTACTCTAGGGGCAAGAGATGCTGCATaGTCAGAAAGCAAAATTTGC | + |
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Preference number: 5 (lower is better) Translates to: TTTKTEVVAKAYNPSTLGARDAA*SESKIC Trigger: GCAAATTTTGCTTTCTGACAATGCAGCATCTCTTGC...CCCTAGAGTACTGGGGTTATAGGCCTTTGCCACCACTTCAGTTTTTGTTGTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | ACCCAACCCTGGCTGTTTGTTGAATGGACTAAAATAAGCACTCTAGGGACTGGACTTGGCTTTAACAAATaGGACTATTGGGCCAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: TQPWLFVEWTKISTLGTGLGFNK*DYWAKF Trigger: GAACTTGGCCCAATAGTCCAATTTGTTAAAGCCAAG...TCCAGTCCCTAGAGTGCTTATTTTAGTCCATTCAACAAACAGCCAGGGTTGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS-3UTR CAA 90 bp | ACCCAACCCTGGCTGTTTGTTGAATGGACTAAAATAAGCACTCTAGGGACTGGATTTCATTTCTGCTTTTaGGACTTCATCCAACCCATC | + |
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Preference number: 5 (lower is better) Translates to: TQPWLFVEWTKISTLGTGFHFCF*DFIQPI Trigger: GATGGGTTGGATGAAGTCCAAAAAGCAGAAATGAAA...TCCAGTCCCTAGAGTGCTTATTTTAGTCCATTCAACAAACAGCCAGGGTTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS TCA 90 bp | AGAATGGCCCTTGGCTTTAACAAATTGGACTATTGGGCCAAGTTCTaGCACTACTTGATTTCCCACATGAATAAAAGGAACTTTTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RMALGFNKLDYWAKF*HYLISHMNKRNFSR Trigger: TCTGGAAAAGTTCCTTTTATTCATGTGGGAAATCAAGTAGTGTCAGAACTTGGCCCAATAGTCCAATTTGTTAAAGCCAAGGGCCATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS GCA 90 bp | ATGAATAAAAGGAACTTTTCCAGATGGAGACATATATTCCGCATTTaGCCTACACACCACTTTGACAGGCAGATTACACATCTGCAAAAA | + |
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Preference number: 5 (lower is better) Translates to: MNKRNFSRWRHIFRI*PTHHFDRQITHLQK Trigger: TTTTTGCAGATGTGTAATCTGCCTGTCAAAGTGGTGTGTAGGGCAAATGCGGAATATATGTCTCCATCTGGAAAAGTTCCTTTTATTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS GCA 72 bp | AGGAACTTTTCCAGATGGAGACATATATTCCGCATTTaGCCTACACACCACTTTGACAGGCAGATTACACAT | + |
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Preference number: 6 (lower is better) Translates to: RNFSRWRHIFRI*PTHHFDRQITH Trigger: ATGTGTAATCTGCCTGTCAAAGTGGTGTGTAGGGCAAATGCGGAATATATGTCTCCATCTGGAAAAGTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS TCA 72 bp | ACTGGAGATACAGCTCTGCAGTCAGCAGCATATTGTTaGCTAATTCCATGTAGGCTTTCATTTCTGCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: TGDTALQSAAYC*LIPCRLSFLLF Trigger: AAAAAGCAGAAATGAAAGCCTACATGGAATTAGTCAACAATATGCTGCTGACTGCAGAGCTGTATCTCCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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| CDS TCA 72 bp | CTTGGCTTTAACAAATTGGACTATTGGGCCAAGTTCTaGCACTACTTGATTTCCCACATGAATAAAAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: LGFNKLDYWAKF*HYLISHMNKRN Trigger: GTTCCTTTTATTCATGTGGGAAATCAAGTAGTGTCAGAACTTGGCCCAATAGTCCAATTTGTTAAAGCCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028511.8 |
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