Pregenerated sensors for MTX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064068Ensembl transcript IDs: ENSMUST00000073572.12, ENSMUST00000118964.10, ENSMUST00000119222.9, ENSMUST00000129055.2, ENSMUST00000173465.2, ENSMUST00000173475.8, ENSMUST00000239452.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTGGCGTGGAAGTGGCACCTCATCTCAGCCCAGGCTTTGACACCTaGACCCGTATCTTCTTCCAACATCCATTTATTCCCCCTTGGAGT | + |
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Preference number: 1 (lower is better) Translates to: SGVEVAPHLSPGFDT*TRIFFQHPFIPPWS Trigger: ACTCCAAGGGGGAATAAATGGATGTTGGAAGAAGATACGGGTTCAGGTGTCAAAGCCTGGGCTGAGATGAGGTGCCACTTCCACGCCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000129055.2 |
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| 3UTR-3UTR GCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAGAGGGACAGCTGGAATaGACGAGTAGAAAAGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: FGCSNHGETRDSWNARVEEGQLE*TSRKVS Trigger: ACTGACTTTTCTACTCGTGCATTCCAGCTGTCCCTC...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR-3UTR GCA 90 bp | AAACAGGTTTATTCTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATGGGGGAGGGACAGCTGGAATaGACGAGTAGAAAAGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: KQVYSEDSAPFLAAPTMGEGQLE*TSRKVS Trigger: ACTGACTTTTCTACTCGTGCATTCCAGCTGTCCCTC...CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAGAATAAACCTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR-3UTR CAA 90 bp | CCCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGACAGCGCCCCATTTTaGGCTGCTCCAACCATGGGG | + |
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Preference number: 3 (lower is better) Translates to: PIFGCSNHGETRDSWNARDSAPF*AAPTMG Trigger: CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTC...TCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAGACAGCGCCCCATTTTaGGCTGCTCCAACCATGGGG | + |
|
Preference number: 3 (lower is better) Translates to: FGCSNHGETRDSWNARVEDSAPF*AAPTMG Trigger: CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTC...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR CCA 72 bp | CTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATaGGGAGACGAGGGACAGCTGGAATGCACGAGTAGA | + |
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Preference number: 3 (lower is better) Translates to: LRTAPHFWLLQP*GDEGQLECTSR Trigger: TCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR GCA 72 bp | CTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATaGACGAGTAGAAAAGTCAGTCCTGGGAACAGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: LLQPWGDEGQLE*TSRKVSPGNRN Trigger: GTTCCTGTTCCCAGGACTGACTTTTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAATCTCAGCCCAGGCTTaGACACCTGAACCCGTATCT | + |
|
Preference number: 3 (lower is better) Translates to: FGCSNHGETRDSWNARVEISAQA*TPEPVS Trigger: AGATACGGGTTCAGGTGTCAAAGCCTGGGCTGAGAT...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129055.2 |
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| 3UTR CCA 72 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTaGAATGCACGAGTAGAAAAGTCAGTCCTGGGAACA | + |
|
Preference number: 3 (lower is better) Translates to: FGCSNHGETRDS*NARVEKSVLGT Trigger: TGTTCCCAGGACTGACTTTTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000129055.2 ENSMUST00000173475.8 ENSMUST00000239452.2 |
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| 3UTR TCA 72 bp | GAAGTGGCACCTCATCTCAGCCCAGGCTTTGACACCTaGACCCGTATCTTCTTCCAACATCCATTTATTCCC | + |
|
Preference number: 3 (lower is better) Translates to: EVAPHLSPGFDT*TRIFFQHPFIP Trigger: GGGAATAAATGGATGTTGGAAGAAGATACGGGTTCAGGTGTCAAAGCCTGGGCTGAGATGAGGTGCCACTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129055.2 |
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| CDS-3UTR CCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAACGGGGCTTTGGGGTCTaGGGAGGCGTGGCTCTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVERGFGV*GGVALG Trigger: GCCAAGAGCCACGCCTCCCCAGACCCCAAAGCCCCG...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS-3UTR CCA 90 bp | CCCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGACCCCTGCTCCTCCCCTaGCACATTCCTGTCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: PIFGCSNHGETRDSWNARPLLLP*HIPVPQ Trigger: CTGAGGGACAGGAATGTGCCAGGGGAGGAGCAGGGG...TCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CCA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTGGGAGAGGGGCATCTaGTGCGGCTTGTCGGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: PFLAAPTMGRRGTAGMHEWERGI*CGLSVS Trigger: AGAGACCGACAAGCCGCACCAGATGCCCCTCTCCCA...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS-3UTR TCA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGAGCAGGCAGAGTTCCTaGAGGGCTCTGCCAAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: PFLAAPTMGRRGTAGMHESRQSS*RALPRI Trigger: AATCCTTGGCAGAGCCCTTCAGGAACTCTGCCTGCT...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000239452.2 |
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| CDS-3UTR GCA 90 bp | AAACAGGTTTATTCTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATGGGGGAGAGGGGCATCTGGTaGGGCTTGTCGGTCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KQVYSEDSAPFLAAPTMGERGIW*GLSVSG Trigger: CCCAGAGACCGACAAGCCGCACCAGATGCCCCTCTC...CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAGAATAAACCTGTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS-3UTR CCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAAGCAGAACAGCTCCATaGGCGCCGCCATCTTGTACG | + |
|
Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVESRTAP*APPSCT Trigger: CGTACAAGATGGCGGCGCCCATGGAGCTGTTCTGCT...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS-3UTR TCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAAGCAGGCAGAGTTCCTaGAGGGCTCTGCCAAGGATT | + |
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Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVESRQSS*RALPRI Trigger: AATCCTTGGCAGAGCCCTTCAGGAACTCTGCCTGCT...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000239452.2 |
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| CDS-3UTR TCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAATCCCTCAGGGATACCTaGAGGGCTCTGCCAAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVESLRDT*RALPRI Trigger: AATCCTTGGCAGAGCCCTTCAGGTATCCCTGAGGGA...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR GCA 90 bp | AAACAGGTTTATTCTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATGGGGTGCATTCCTGTCCCCTaGTCCTCCCCTGGCACATTC | + |
|
Preference number: 4 (lower is better) Translates to: KQVYSEDSAPFLAAPTMGCIPVP*SSPGTF Trigger: GAATGTGCCAGGGGAGGAGCAGGGGACAGGAATGCA...CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAGAATAAACCTGTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| 3UTR CAA 72 bp | CTGGCGTGGAAGTGGCACCTCATCTCAGCCCAGGCTTaGACACCTGAACCCGTATCTTCTTCCAACATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LAWKWHLISAQA*TPEPVSSSNIH Trigger: ATGGATGTTGGAAGAAGATACGGGTTCAGGTGTCAAAGCCTGGGCTGAGATGAGGTGCCACTTCCACGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129055.2 |
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| CDS-3UTR GCA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGCATACTCATTTGCATTaGATTCCTGTCCCCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PFLAAPTMGRRGTAGMHEHTHLH*IPVPCS Trigger: GGAGCAGGGGACAGGAATGCAATGCAAATGAGTATG...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CCA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGGGTGATGATCTTGTGTaGCACTGTAATGACTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: PFLAAPTMGRRGTAGMHEGDDLV*HCNDFP Trigger: GGGAAAGTCATTACAGTGCCACACAAGATCATCACC...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000239452.2 |
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| CDS-3UTR CCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAATCTGCCAAGGATTGCTaGTCTTGTGTATCTTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVESAKDC*SCVSSV Trigger: CACTGAAGATACACAAGACCAGCAATCCTTGGCAGA...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000239452.2 |
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| CDS-3UTR CCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAGGTGATGATCTTGTGTaGCACTGTAATGACTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVEGDDLV*HCNDFP Trigger: GGGAAAGTCATTACAGTGCCACACAAGATCATCACC...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000239452.2 |
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| CDS-3UTR GCA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAACTAGTCATACTCATTTaGATTGCATTCCTGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: FGCSNHGETRDSWNARVELVILI*IAFLSP Trigger: AGGGGACAGGAATGCAATGCAAATGAGTATGACTAG...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CCA 90 bp | AAACAGGTTTATTCTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATGGGGTCTGCCAAGGATTGCTaGTCTTGTGTATCTTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: KQVYSEDSAPFLAAPTMGSAKDC*SCVSSV Trigger: CACTGAAGATACACAAGACCAGCAATCCTTGGCAGA...CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAGAATAAACCTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000073572.12 ENSMUST00000118964.10 ENSMUST00000119222.9 ENSMUST00000239452.2 |
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| CDS-3UTR CCA 90 bp | CAAAAAGTATGGATTAGCACAGGCAGTAGTTTCTCCTCCAGCAGAGACATGAAGGGTGATGATCTTGTGTaGCACTGTAATGACTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: QKVWISTGSSFSSSRDMKGDDLV*HCNDFP Trigger: GGGAAAGTCATTACAGTGCCACACAAGATCATCACC...CTTCATGTCTCTGCTGGAGGAGAAACTACTGCCTGTGCTAATCCATACTTTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173465.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGTTTATTCTGAGGACAGCGCCCCATTTTTGGCTGCTCCAACCATGGGGTCTATCCAAAAAGTATaGATCTCTTTACGAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: KQVYSEDSAPFLAAPTMGSIQKV*ISLRRW Trigger: CCATCTTCGTAAAGAGATCCATACTTTTTGGATAGA...CCCCATGGTTGGAGCAGCCAAAAATGGGGCGCTGTCCTCAGAATAAACCTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000118964.10 |
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| CDS GCA 90 bp | CGCCGCCATCTTGTACGCTCTCTGACCCGGAAGCACCTTCTCGTATaGGTCGGCCTTCTCTCGCCAGGAACCGCCCCTGGTCCCCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: RRHLVRSLTRKHLLV*VGLLSPGTAPGPRL Trigger: GAGGCGGGGACCAGGGGCGGTTCCTGGCGAGAGAAGGCCGACGCATACGAGAAGGTGCTTCCGGGTCAGAGAGCGTACAAGATGGCGGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS CCA 90 bp | AGCCACGAACCGCCGGCGACACGGAGGGCTTGGGAGAGGGGCATCTaGTGCGGCTTGTCGGTCTCTGGGGGCACTTGCCAAACTGCACAT | + |
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Preference number: 5 (lower is better) Translates to: SHEPPATRRAWERGI*CGLSVSGGTCQTAH Trigger: ATGTGCAGTTTGGCAAGTGCCCCCAGAGACCGACAAGCCGCACCAGATGCCCCTCTCCCAAGCCCTCCGTGTCGCCGGCGGTTCGTGGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS TCA 90 bp | GACCAGCAGAACAGCTCCATGGGCGCCGCCATCTTGTACGCTCTCTaGCCCGGAAGCACCTTCTCGTATGCGTCGGCCTTCTCTCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: DQQNSSMGAAILYAL*PGSTFSYASAFSRQ Trigger: CTGGCGAGAGAAGGCCGACGCATACGAGAAGGTGCTTCCGGGTCAGAGAGCGTACAAGATGGCGGCGCCCATGGAGCTGTTCTGCTGGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS-3UTR CAA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAAGGTCTCTGGGGGCACTaGCCAAACTGCACATGGCCC | + |
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Preference number: 5 (lower is better) Translates to: FGCSNHGETRDSWNARVEGLWGH*PNCTWP Trigger: GGGCCATGTGCAGTTTGGCAAGTGCCCCCAGAGACC...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS GCA 90 bp | AGTATACTCACAGGGTCCAGCTTGCCTAGTCATACTCATTTGCATTaGATTCCTGTCCCCTGCTCCTCCCCTGGCACATTCCTGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: SILTGSSLPSHTHLH*IPVPCSSPGTFLSL Trigger: GAGGGACAGGAATGTGCCAGGGGAGGAGCAGGGGACAGGAATGCAATGCAAATGAGTATGACTAGGCAAGCTGGACCCTGTGAGTATACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CAA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTCATACTCATTTGCATaGCATTCCTGTCCCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: PFLAAPTMGRRGTAGMHESYSFA*HSCPLL Trigger: GAGCAGGGGACAGGAATGCAATGCAAATGAGTATGA...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CAA 90 bp | TTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGTAGAACTCACAGGGTCCAGCTaGCCTAGTCATACTCATTTG | + |
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Preference number: 5 (lower is better) Translates to: FGCSNHGETRDSWNARVELTGSS*PSHTHL Trigger: CAAATGAGTATGACTAGGCAAGCTGGACCCTGTGAG...TTCTACTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS GCA 90 bp | AAAGAAGTATACTCACAGGGTCCAGCTTGCCTAGTCATACTCATTTaGATTGCATTCCTGTCCCCTGCTCCTCCCCTGGCACATTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: KEVYSQGPACLVILI*IAFLSPAPPLAHSC Trigger: ACAGGAATGTGCCAGGGGAGGAGCAGGGGACAGGAATGCAATGCAAATGAGTATGACTAGGCAAGCTGGACCCTGTGAGTATACTTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS-3UTR CAA 90 bp | CCATTTTTGGCTGCTCCAACCATGGGGAGACGAGGGACAGCTGGAATGCACGAGGCAGAGTTCCTGATATaGAGAAAGAAGTATACTCAC | + |
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Preference number: 5 (lower is better) Translates to: PFLAAPTMGRRGTAGMHEAEFLI*RKKYTH Trigger: GTGAGTATACTTCTTTCTCAATATCAGGAACTCTGC...CTCGTGCATTCCAGCTGTCCCTCGTCTCCCCATGGTTGGAGCAGCCAAAAATGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS CCA 72 bp | CGCGGCGGGGCTGTGAGAGGTGGGGCATCGGCCTTCTaGGGAGCGCCGCGGGCTCGTCCTGAGGCGGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: RGGAVRGGASAF*GAPRARPEAAP Trigger: GGGGGCCGCCTCAGGACGAGCCCGCGGCGCTCCCCAGAAGGCCGATGCCCCACCTCTCACAGCCCCGCCGCG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS TCA 72 bp | GGCATCGGCCTTCTGGGGAGCGCCGCGGGCTCGTCCTaGGGCGGCCCCCGTAAGGGAGCAGGGCCGCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: GIGLLGSAAGSS*GGPRKGAGPPS Trigger: GGACGGCGGCCCTGCTCCCTTACGGGGGCCGCCTCAGGACGAGCCCGCGGCGCTCCCCAGAAGGCCGATGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS CCA 72 bp | TCTTGGCGGCCTGAGCCGCGGCGGGGCTGTGAGAGGTaGGGCATCGGCCTTCTGGGGAGCGCCGCGGGCTCG | + |
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Preference number: 6 (lower is better) Translates to: SWRPEPRRGCER*GIGLLGSAAGS Trigger: CGAGCCCGCGGCGCTCCCCAGAAGGCCGATGCCCCACCTCTCACAGCCCCGCCGCGGCTCAGGCCGCCAAGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS CCA 72 bp | CCGCCGGCGACACGGAGGGCTTGGGAGAGGGGCATCTaGTGCGGCTTGTCGGTCTCTGGGGGCACTTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: PPATRRAWERGI*CGLSVSGGTCQ Trigger: TTGGCAAGTGCCCCCAGAGACCGACAAGCCGCACCAGATGCCCCTCTCCCAAGCCCTCCGTGTCGCCGGCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS CAA 72 bp | ACACGGAGGGCTTGGGAGAGGGGCATCTGGTGCGGCTaGTCGGTCTCTGGGGGCACTTGCCAAACTGCACAT | + |
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Preference number: 6 (lower is better) Translates to: TRRAWERGIWCG*SVSGGTCQTAH Trigger: ATGTGCAGTTTGGCAAGTGCCCCCAGAGACCGACAAGCCGCACCAGATGCCCCTCTCCCAAGCCCTCCGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS TCA 72 bp | AACAGCTCCATGGGCGCCGCCATCTTGTACGCTCTCTaGCCCGGAAGCACCTTCTCGTATGCGTCGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: NSSMGAAILYAL*PGSTFSYASAF Trigger: GAAGGCCGACGCATACGAGAAGGTGCTTCCGGGTCAGAGAGCGTACAAGATGGCGGCGCCCATGGAGCTGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239452.2 |
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| CDS GCA 72 bp | CCTAGTCATACTCATTTGCATTGCATTCCTGTCCCCTaGTCCTCCCCTGGCACATTCCTGTCCCTCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: PSHTHLHCIPVP*SSPGTFLSLRD Trigger: ATCCCTGAGGGACAGGAATGTGCCAGGGGAGGAGCAGGGGACAGGAATGCAATGCAAATGAGTATGACTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS GCA 72 bp | TACTCACAGGGTCCAGCTTGCCTAGTCATACTCATTTaGATTGCATTCCTGTCCCCTGCTCCTCCCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: YSQGPACLVILI*IAFLSPAPPLA Trigger: TGCCAGGGGAGGAGCAGGGGACAGGAATGCAATGCAAATGAGTATGACTAGGCAAGCTGGACCCTGTGAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS CAA 90 bp | GAAAGAAGTATACTCACAGGGTCCAGCTTGCCTAGTCATACTCATTaGCATTGCATTCCTGTCCCCTGCTCCTCCCCTGGCACATTCCTG | + |
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Preference number: 6 (lower is better) Translates to: ERSILTGSSLPSHTH*HCIPVPCSSPGTFL Trigger: CAGGAATGTGCCAGGGGAGGAGCAGGGGACAGGAATGCAATGCAAATGAGTATGACTAGGCAAGCTGGACCCTGTGAGTATACTTCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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| CDS CAA 72 bp | CATCACTGGTTCGAAGAGCAGGCAGAGTTCCTGATATaGAGAAAGAAGTATACTCACAGGGTCCAGCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: HHWFEEQAEFLI*RKKYTHRVQLA Trigger: GGCAAGCTGGACCCTGTGAGTATACTTCTTTCTCAATATCAGGAACTCTGCCTGCTCTTCGAACCAGTGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119222.9 |
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