RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTSS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022353

Ensembl transcript IDs: ENSMUST00000080371.8, ENSMUST00000227045.2, ENSMUST00000227196.2, ENSMUST00000228067.2

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCAACGGGAGATCTGCGGAGCACATGGGACCCACCAAGTCTCCTaGCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAG +
Preference number: 1 (lower is better)
Translates to: SQREICGAHGTHQVS*PKCQACTVSCCAAE
Trigger: CTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCATGTGCTCCGCAGATCTCCCGTTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CCA 90 bp TTACGTCATCAGAGGCTAGAGCCAACGGGAGATCTGCGGAGCACATaGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGT +
Preference number: 1 (lower is better)
Translates to: LRHQRLEPTGDLRST*DPPSLLPKMSGVYC
Trigger: ACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCATGTGCTCCGCAGATCTCCCGTTGGCTCTAGCCTCTGATGACGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 90 bp CAATCCCCACACAGTCCACCATGTCCGGTTTCCTTCTCTGCGTACTaGTCAACTGTTACTCCTGCGTTTCTCCTCCAGAACACAGTATAT +
Preference number: 1 (lower is better)
Translates to: QSPHSPPCPVSFSAY*STVTPAFLLQNTVY
Trigger: ATATACTGTGTTCTGGAGGAGAAACGCAGGAGTAACAGTTGAGCAGTACGCAGAGAAGGAAACCGGACATGGTGGACTGTGTGGGGATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 90 bp TGCAAAACCATCTCAAGCATCATATGCACAATGCATCAGCTACTTTaGGTCGTCAAGATTGGCGGGCTAAACCACAGGCACTACTGTTTG +
Preference number: 1 (lower is better)
Translates to: CKTISSIICTMHQLL*VVKIGGLNHRHYCL
Trigger: CAAACAGTAGTGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTTGAGATGGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CCA 90 bp AAGCATCATATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTaGCGGGCTAAACCACAGGCACTACTGTTTGCTTCGTCTGCAAAA +
Preference number: 1 (lower is better)
Translates to: KHHMHNASATLSRQD*RAKPQALLFASSAK
Trigger: TTTTGCAGACGAAGCAAACAGTAGTGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 90 bp GCTCAACTGTTACTCCTGCGTTTCTCCTCCAGAACACAGTATATGTaGGTGAGGGTTTCACCCCTTATCCGTTGTGTTTATCCATTAAAA +
Preference number: 1 (lower is better)
Translates to: AQLLLLRFSSRTQYM*VRVSPLIRCVYPLK
Trigger: TTTTAATGGATAAACACAACGGATAAGGGGTGAAACCCTCACTCACATATACTGTGTTCTGGAGGAGAAACGCAGGAGTAACAGTTGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 90 bp TCCATTCCTTTCAAAGGTTTAAAATACCGCTTGTCTCTATTAGAATaGCCTTGCAGCGATGTCTGCATCTGCAAAACCATCTCAAGCATC +
Preference number: 1 (lower is better)
Translates to: SIPFKGLKYRLSLLE*PCSDVCICKTISSI
Trigger: GATGCTTGAGATGGTTTTGCAGATGCAGACATCGCTGCAAGGTCATTCTAATAGAGACAAGCGGTATTTTAAACCTTTGAAAGGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 90 bp TTATCTAAAGATGTCGAATACTTTGAAAAGAGCAGGATTCCGAATTaGCTACAAAATCGTTTGCTTGATTATAGACTGGAATGGATCAAG +
Preference number: 1 (lower is better)
Translates to: LSKDVEYFEKSRIPN*LQNRLLDYRLEWIK
Trigger: CTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGGAATCCTGCTCTTTTCAAAGTATTCGACATCTTTAGATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTCCCATGGCAGCAGCATaGGCAGGACCGGGTGTGGAT +
Preference number: 2 (lower is better)
Translates to: PKCQACTVSCCAAEGLALPMAAA*AGPGVD
Trigger: ATCCACACCCGGTCCTGCGCATGCTGCTGCCATGGG...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAATCCTTCTCTGCGTACTaGTCAACTGTTACTCCTGCG +
Preference number: 2 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGESFSAY*STVTPA
Trigger: CGCAGGAGTAACAGTTGAGCAGTACGCAGAGAAGGA...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAAAGAGTTCGTTCGCGCTaGCAGCATCTCCTGGGAACC +
Preference number: 2 (lower is better)
Translates to: NVRRVLSAAVLPRALPFERVRSR*QHLLGT
Trigger: GGTTCCCAGGAGATGCTGCCAGCGCGAACGAACTCT...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGTGCGGTCAAGAGGAATaGCGGGAGAAAGGAAGTCCT +
Preference number: 2 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGCGQEE*REKGSP
Trigger: AGGACTTCCTTTCTCCCGGCATTCCTCTTGACCGCA...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp TGGCAGCAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGATATGGCTTATTCAGATaGGTTAACCATGAAGCTACT +
Preference number: 2 (lower is better)
Translates to: WQQHAQDRVWMLCVRSRGYGLFR*VNHEAT
Trigger: AGTAGCTTCATGGTTAACGCATCTGAATAAGCCATA...TCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTGCTGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTGCACGTTTTCTGAATTaGCTTACCCCTTTGGATGTA +
Preference number: 2 (lower is better)
Translates to: PKCQACTVSCCAAEGLALARFLN*LTPLDV
Trigger: TACATCCAAAGGGGTAAGGCAATTCAGAAAACGTGC...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTACTAGACAACTACAATaGATCTACAAAAGCGTGAGG +
Preference number: 2 (lower is better)
Translates to: PKCQACTVSCCAAEGLALTRQLQ*IYKSVR
Trigger: CCTCACGCTTTTGTAGATGCATTGTAGTTGTCTAGT...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CCA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACGCGCAGGACCGGGTGTaGATGCTGTGTGTGCGGTCA +
Preference number: 2 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDAQDRV*MLCVRS
Trigger: TGACCGCACACACAGCATCCACACCCGGTCCTGCGC...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACGCTATGTTGACAGTGTaGCCCTCCCCCAGCCCTCCC +
Preference number: 2 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYAMLTV*PSPSPP
Trigger: GGGAGGGCTGGGGGAGGGGCACACTGTCAACATAGC...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp TCAAAATATCTGGGCTTTTCAACGCACCCAGCCTGCTGGGCACAGTTAAGTAAATCCGGTTTCCTTCTCTaGGTACTGCTCAACTGTTAC +
Preference number: 2 (lower is better)
Translates to: SKYLGFSTHPACWAQLSKSGFLL*VLLNCY
Trigger: GTAACAGTTGAGCAGTACGCAGAGAAGGAAACCGGA...TTTACTTAACTGTGCCCAGCAGGCTGGGTGCGTTGAAAAGCCCAGATATTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 90 bp CTGCAAAACCATCTCAAGCATCATATGCACAATGCATCAGCTACTTaGAGTCGTCAAGATTGGCGGGCTAAACCACAGGCACTACTGTTT +
Preference number: 2 (lower is better)
Translates to: LQNHLKHHMHNASAT*SRQDWRAKPQALLF
Trigger: AAACAGTAGTGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTTGAGATGGTTTTGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp CGCTGTTATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCTCAACTGTTACTCCTaGGTTTCTCCTCCAGAACAC +
Preference number: 2 (lower is better)
Translates to: RCYLYKFQTKTAQGEVNSLNCYS*VSPPEH
Trigger: GTGTTCTGGAGGAGAAACGCAGGAGTAACAGTTGAG...AGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACTTGAGTCGTCAAGATTaGCGGGCTAAACCACAGGCA +
Preference number: 2 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYLSRQD*RAKPQA
Trigger: TGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAA...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR TCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAACACAGTATATGTGAGTaGGGGTTTCACCCCTTATCC +
Preference number: 2 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQHSICE*GFHPLS
Trigger: GGATAAGGGGTGAAACCCTCACTCACATATACTGTG...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 90 bp CCTGAATTGAAGTCAGACTCCCAGTTGACAGTAAATAAATCCACTTaGCTCCGGTGTTTAGAAGCCAATCAACTGTCCTTATGTAAGGAA +
Preference number: 2 (lower is better)
Translates to: PELKSDSQLTVNKST*LRCLEANQLSLCKE
Trigger: TTCCTTACATAAGGACAGTTGATTGGCTTCTAAACACCGGAGCAAAGTGGATTTATTTACTGTCAACTGGGAGTCTGACTTCAATTCAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 90 bp TCCTTTCAAAGGTTTAAAATACCGCTTGTCTCTATTAGAATGACCTaGCAGCGATGTCTGCATCTGCAAAACCATCTCAAGCATCATATG +
Preference number: 2 (lower is better)
Translates to: SFQRFKIPLVSIRMT*QRCLHLQNHLKHHM
Trigger: CATATGATGCTTGAGATGGTTTTGCAGATGCAGACATCGCTGCAAGGTCATTCTAATAGAGACAAGCGGTATTTTAAACCTTTGAAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CCA 90 bp ATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAATTGCCTTACCCCTTTaGATGTATTTGGATTCAGTG +
Preference number: 2 (lower is better)
Translates to: IYTSSKQKLHRERSTLNTIALPL*MYLDSV
Trigger: CACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT...TGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR TCA 90 bp ATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAGTTCATTTTCAGCTGTaGCACTGCTTTTACAATATG +
Preference number: 2 (lower is better)
Translates to: IYTSSKQKLHRERSTLNTVHFQL*HCFYNM
Trigger: CATATTGTAAAAGCAGTGTCACAGCTGAAAATGAAC...TGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR GCA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACGCCTACAAAATCGTTTaGTTGATTATAGACTGGAAT +
Preference number: 2 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDAYKIV*LIIDWN
Trigger: ATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGC...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp CTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTaGTGCCGAGGGCCTTGCCCTTTGAACAGCTGTCTT +
Preference number: 3 (lower is better)
Translates to: LPKMSGVYCQLL*CRGPCPLNSCL
Trigger: AAGACAGCTGTTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp GAGATCTGCGGAGCACATGGGACCCACCAAGTCTCCTaGCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: EICGAHGTHQVS*PKCQACTVSCC
Trigger: ACAGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCATGTGCTCCGCAGATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTGAGCAGGATTCCGAATaGCCTACAAAATCGTTTGCT +
Preference number: 3 (lower is better)
Translates to: PKCQACTVSCCAAEGLALEQDSE*PTKSFA
Trigger: AGCAAACGATTTTGTAGGCAATTCGGAATCCTGCTC...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGTTAAATGTAACAGGATaGGCTATGTTGACAGTGTGC +
Preference number: 3 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPLNVTG*AMLTVC
Trigger: GCACACTGTCAACATAGCCAATCCTGTTACATTTAA...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp CACAGTCCACCATGTCCGGTTTCCTTCTCTGCGTACTaGTCAACTGTTACTCCTGCGTTTCTCCTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: HSPPCPVSFSAY*STVTPAFLLQN
Trigger: GTTCTGGAGGAGAAACGCAGGAGTAACAGTTGAGCAGTACGCAGAGAAGGAAACCGGACATGGTGGACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp ATCCCCACACAGTCCACCATGTCCGGTTTCCTTCTCTaGGTACTGCTCAACTGTTACTCCTGCGTTTCTCCT +
Preference number: 3 (lower is better)
Translates to: IPTQSTMSGFLL*VLLNCYSCVSP
Trigger: AGGAGAAACGCAGGAGTAACAGTTGAGCAGTACGCAGAGAAGGAAACCGGACATGGTGGACTGTGTGGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTGTAAATAAATCCACTTaGCTCCGGTGTTTAGAAGCC +
Preference number: 3 (lower is better)
Translates to: PKCQACTVSCCAAEGLALVNKST*LRCLEA
Trigger: GGCTTCTAAACACCGGAGCAAAGTGGATTTATTTAC...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTAAGATGTCGAATACTTaGAAAAGAGCAGGATTCCGA +
Preference number: 3 (lower is better)
Translates to: PKCQACTVSCCAAEGLALKMSNT*KRAGFR
Trigger: TCGGAATCCTGCTCTTTTCAAAGTATTCGACATCTT...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTCCCCTTTGGATGTATTaGGATTCAGTGGAAGTGAGT +
Preference number: 3 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAPLWMY*DSVEVS
Trigger: ACTCACTTCCACTGAATCCAAATACATCCAAAGGGG...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAAAAATTGGTAAGCACATaGGCAAAATTGCTAGACTCC +
Preference number: 3 (lower is better)
Translates to: NVRRVLSAAVLPRALPFEKLVST*AKLLDS
Trigger: GGAGTCTAGCAATTTTGCCAATGTGCTTACCAATTT...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp ACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTaGACAGCTGTCTTTAAATGTGAGCTCTTGAAATCT +
Preference number: 3 (lower is better)
Translates to: TVSCCAAEGLAL*TAVFKCELLKS
Trigger: AGATTTCAAGAGCTCACATTTAAAGACAGCTGTTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CCA 72 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTaGCGGGCTAAACCACAGGCACTACTGTTTGCTTCG +
Preference number: 3 (lower is better)
Translates to: MHNASATLSRQD*RAKPQALLFAS
Trigger: CGAAGCAAACAGTAGTGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp ATGACTAGAGGAACGGTACTCTCACATCCGAGGTGGTaGGGTGTTAAAGTAGAAGATTACGTCATCAGAGGC +
Preference number: 3 (lower is better)
Translates to: MTRGTVLSHPRW*GVKVEDYVIRG
Trigger: GCCTCTGATGACGTAATCTTCTACTTTAACACCTCACCACCTCGGATGTGAGAGTACCGTTCCTCTAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp ATCTCAAGCATCATATGCACAATGCATCAGCTACTTTaGGTCGTCAAGATTGGCGGGCTAAACCACAGGCAC +
Preference number: 3 (lower is better)
Translates to: ISSIICTMHQLL*VVKIGGLNHRH
Trigger: GTGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp GCATCTGCAAAACCATCTCAAGCATCATATGCACAATaGATCAGCTACTTTGAGTCGTCAAGATTGGCGGGC +
Preference number: 3 (lower is better)
Translates to: ASAKPSQASYAQ*ISYFESSRLAG
Trigger: GCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTTGAGATGGTTTTGCAGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGAAAACATTGCCTGAATaGAAGTCAGACTCCCAGTTG +
Preference number: 3 (lower is better)
Translates to: MHNASATLSRQDWRAKPQKTLPE*KSDSQL
Trigger: CAACTGGGAGTCTGACTTCAATTCAGGCAATGTTTT...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp TTACTCCTGCGTTTCTCCTCCAGAACACAGTATATGTaGGTGAGGGTTTCACCCCTTATCCGTTGTGTTTAT +
Preference number: 3 (lower is better)
Translates to: LLLRFSSRTQYM*VRVSPLIRCVY
Trigger: ATAAACACAACGGATAAGGGGTGAAACCCTCACTCACATATACTGTGTTCTGGAGGAGAAACGCAGGAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAACACAGGCACTACTGTTaGCTTCGTCTGCAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: QTKTAQGEVNSQYKLATKHRHYC*LRLQKE
Trigger: CTCCTTTTGCAGACGAAGCAAACAGTAGTGCCTGTG...TTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp TCAAAATATCTGGGCTTTTCAACGCACCCAGCCTGCTGGGCACAGTTAAGTAAATGCCTACAAAATCGTTaGCTTGATTATAGACTGGAA +
Preference number: 3 (lower is better)
Translates to: SKYLGFSTHPACWAQLSKCLQNR*LDYRLE
Trigger: TTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCA...TTTACTTAACTGTGCCCAGCAGGCTGGGTGCGTTGAAAAGCCCAGATATTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp TTGCCCTTTGAACAGCTGTCTTTAAATGTGAGCTCTTaGAATCTACAGTTCTCTGTTGACTTTAGGGATGGG +
Preference number: 3 (lower is better)
Translates to: LPFEQLSLNVSS*NLQFSVDFRDG
Trigger: CCCATCCCTAAAGTCAACAGAGAACTGTAGATTTCAAGAGCTCACATTTAAAGACAGCTGTTCAAAGGGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR-3UTR CAA 90 bp CGCTGTTATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTAACTACCCAAGGTGTTaGTCACATTCTTTCTACATT +
Preference number: 3 (lower is better)
Translates to: RCYLYKFQTKTAQGEVNSNYPRC*SHSFYI
Trigger: AATGTAGAAAGAATGTGACAAACACCTTGGGTAGTT...AGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR TCA 72 bp TTCAAAGGTTTAAAATACCGCTTGTCTCTATTAGAATaGCCTTGCAGCGATGTCTGCATCTGCAAAACCATC +
Preference number: 3 (lower is better)
Translates to: FKGLKYRLSLLE*PCSDVCICKTI
Trigger: GATGGTTTTGCAGATGCAGACATCGCTGCAAGGTCATTCTAATAGAGACAAGCGGTATTTTAAACCTTTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR GCA 72 bp TACACGCTGTTATCTATACAAGTTCCAAACAAAAACTaGACAGGGAGAGGTCAACTCTCAATACAAACTAGC +
Preference number: 3 (lower is better)
Translates to: YTLLSIQVPNKN*TGRGQLSIQTS
Trigger: GCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCGTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGAGCCTCACGGGGGCCTaGTGGGCCAGGTTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPSLTGA*WARLEL
Trigger: CAGCTCTAACCTGGCCCAGCAGGCCCCCGTGAGGCT...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGACCGGTAATGCGAGCTaGGCGAGTGCGAGTGGGAGC +
Preference number: 4 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPTGNAS*ASASGS
Trigger: GCTCCCACTCGCACTCGCCCAGCTCGCATTACCGGT...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TGGCAGCAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGATGCGGGGTCACTCTCTaGAATCGGGCCTGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: WQQHAQDRVWMLCVRSRGCGVTL*NRAWGD
Trigger: GTCTCCCCAGGCCCGATTCCAGAGAGTGACCCCGCA...TCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTGCTGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAATGGCATGGGAGAGGGTaGCTTGGACTGGAAGGCGTC +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGEWHGRG*LGLEGV
Trigger: GACGCCTTCCAGTCCAAGTCACCCTCTCCCATGCCA...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp TGGCAGCAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAGTAGTGAGTCCCGGCTaGTCCTCTGCACGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: WQQHAQDRVWMLCVRSRGVVSPG*SSARPA
Trigger: AGCTGGACGTGCAGAGGAGCAGCCGGGACTCACTAC...TCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTGCTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAACGTGGGAGGACACGCTaGACAGCCTCACGGGGGCCT +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFERGRTR*TASRGP
Trigger: AGGCCCCCGTGAGGCTGTCCAGCGTGTCCTCCCACG...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAACTCCTCTGGCCCATCTaGAGGGGATGGCAAAACCCC +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGELLWPI*RGWQNP
Trigger: GGGGTTTTGCCATCCCCTCCAGATGGGCCAGAGGAG...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGGAAGGTGGACAGAGGTaGCCCGAGGGAGCAGGCGGG +
Preference number: 4 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGEGGQR*PEGAGG
Trigger: CCCGCCTGCTCCCTCGGGTCACCTCTGTCCACCTTC...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTGCTAGGGATCTGAGATaGCGGGAACATGCCGGGCCC +
Preference number: 4 (lower is better)
Translates to: PKCQACTVSCCAAEGLALARDLR*REHAGP
Trigger: GGGCCCGGCATGTTCCCGTCATCTCAGATCCCTAGC...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAATCTGGGGCTCAGGTCTaGGGGGTCACTCTCTGGAAT +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGESGAQV*GVTLWN
Trigger: ATTCCAGAGAGTGACCCCGCAGACCTGAGCCCCAGA...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAACTCACCCCGCTCCTCTaGCCCATCTGGAGGGGATGG +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFELTPLL*PIWRGW
Trigger: CCATCCCCTCCAGATGGGCCAGAGGAGCGGGGTGAG...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAAAGAGCGCTGTCCAACTaGGGCTGGATGTCGCCCCTC +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFERALSN*GWMSPL
Trigger: GAGGGGCGACATCCAGCCTCAGTTGGACAGCGCTCT...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTGGGAGTCACTGCTGTTaGCGCTGTTCAGGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PKCQACTVSCCAAEGLALGSHCC*RCSGCC
Trigger: GCAGCAGCCTGAACAGCGTCAACAGCAGTGACTCCC...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGGAGGCAGGCAGGCAATaGGGGAAAGGGCCTGCACCC +
Preference number: 4 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGEAGRQ*GKGPAP
Trigger: GGGTGCAGGCCCTTTCCCTCATTGCCTGCCTGCCTC...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAATTCCAGCTAGGGATCTaGGATGACGGGAACATGCCG +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGEFQLGI*DDGNMP
Trigger: CGGCATGTTCCCGTCATCTCAGATCCCTAGCTGGAA...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAACTGGAAGTGGAGGGTTaGCGGGTGCTTGGCCACTCC +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFELEVEG*RVLGHS
Trigger: GGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAG...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAAATGCTCCTTGGTCTCTaGGCCTCTTCAGCACCTGCA +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGEMLLGL*ASSAPA
Trigger: TGCAGGTGCTGAAGAGGCGCAGAGACCAAGGAGCAT...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGCCCACGGGCCCTGCATaGGACTCACTTGATAAACTA +
Preference number: 4 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPPTGPA*DSLDKL
Trigger: TAGTTTATCAAGTGAGTCCCATGCAGGGCCCGTGGG...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGTGCTGAGCGATCGTTaGTGGTCGTCTTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPVLSDR*WSSSSA
Trigger: AGCTGAAGAAGACGACCACCAACGATCGCTCAGCAC...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTAAGAGGGTATATTGCTaGCACCCTGGGGCCCCTCCC +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAKRVYC*HPGAPP
Trigger: GGGAGGGGCCCCAGGGTGTCAGCAATATACCCTCTT...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTTTCAGCACCTGCAGGTaGCCCTCCTGTCGTAGTGGG +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAFSTCR*PSCRSG
Trigger: CCCACTACGACAGGAGGGCCACCTGCAGGTGCTGAA...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGAGAAGCTGCTGCAGACACTTaGCTTTCTGGACATAGTTGT +
Preference number: 4 (lower is better)
Translates to: AQDRVWMLCVRSRGMPGEAAADT*LSGHSC
Trigger: ACAACTATGTCCAGAAAGTCAAGTGTCTGCAGCAGC...TTCTCCCGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGAGGCGTCCTGGGATATaGATCCTGAGTCGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGRRPGI*ILSRGR
Trigger: CCTCCCACGACTCAGGATTCATATCCCAGGACGCCT...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGAGGGTGTTCACCAGTaGCTGGTCATAGGGTCCTGG +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAEGVHQ*LVIGSW
Trigger: CCAGGACCCTATGACCAGCCACTGGTGAACACCCTC...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TGGCAGCAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAGATGTCACTGTTCCTTaGAATGGTGGAGGACTTGTC +
Preference number: 4 (lower is better)
Translates to: WQQHAQDRVWMLCVRSRGDVTVP*NGGGLV
Trigger: GACAAGTCCTCCACCATTCCAAGGAACAGTGACATC...TCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTGCTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGCTTTGGGCCTGGAAGTaGAGGGTTGACGGGTGCTTG +
Preference number: 4 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGLWAWK*RVDGCL
Trigger: CAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAG...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTCTGGGATATGAATCCTaGGTCGTGGGAGGACACGCT +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAALGYES*VVGGHA
Trigger: AGCGTGTCCTCCCACGACTCAGGATTCATATCCCAG...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAATTGTCGAATTCTTGCTaGTCTGCCTCCTGGTCGCCA +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFELSNSC*SASWSP
Trigger: TGGCGACCAGGAGGCAGAGCAGCAAGAATTCGACAA...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAAGCTTGTGAGGGTCCATaGTCAGGCTCTTCAGATCCT +
Preference number: 4 (lower is better)
Translates to: NVRRVLSAAVLPRALPFEACEGP*SGSSDP
Trigger: AGGATCTGAAGAGCCTGACCATGGACCCTCACAAGC...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTATGAATCCTGAGTCGTaGGAGGACACGCTGGACAGC +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAMNPES*EDTLDS
Trigger: GCTGTCCAGCGTGTCCTCCCACGACTCAGGATTCAT...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TGGCAGCAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGATTTGACAGGGATCACTaGTGTCTTGATGGGAATAGG +
Preference number: 4 (lower is better)
Translates to: WQQHAQDRVWMLCVRSRGFDRDH*CLDGNR
Trigger: CCTATTCCCATCAAGACACCAGTGATCCCTGTCAAA...TCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTGCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTAATCACCTGTTCACTTaGGGAGGGCAGCTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAANHLFT*GGQLVR
Trigger: CCTCACAAGCTGCCCTCCTCAAGTGAACAGGTGATT...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGAGGCCTGGTGGCAGCTaGCACCGTCATGCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: MHNASATLSRQDWRAKPQRPGGS*HRHAPW
Trigger: CCAAGGAGCATGACGGTGTCAGCTGCCACCAGGCCT...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGAGATGACGGGAACATaGCGGGCCCAATGGTGTAAT +
Preference number: 4 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAEMTGT*RAQWCN
Trigger: ATTACACCATTGGGCCCGGCATGTTCCCGTCATCTC...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTACATGCCGGGCCCAATaGTGTAATAATGAGCGTAGT +
Preference number: 4 (lower is better)
Translates to: PKCQACTVSCCAAEGLALTCRAQ*CNNERS
Trigger: ACTACGCTCATTATTACACCATTGGGCCCGGCATGT...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp AGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTaGCCCTTTGAACAGCTGTCTTTAAATGTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: RRVLSAAVLPRA*PFEQLSLNVSS
Trigger: AGAGCTCACATTTAAAGACAGCTGTTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp TCAAAATATCTGGGCTTTTCAACGCACCCAGCCTGCTGGGCACAGTTAAGTAAACGCCTCTTCAGCACCTaGAGGTGGCCCTCCTGTCGT +
Preference number: 4 (lower is better)
Translates to: SKYLGFSTHPACWAQLSKRLFST*RWPSCR
Trigger: ACGACAGGAGGGCCACCTGCAGGTGCTGAAGAGGCG...TTTACTTAACTGTGCCCAGCAGGCTGGGTGCGTTGAAAAGCCCAGATATTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGGATGGTCGCCACCCCTaGTGTGACCATAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: MHNASATLSRQDWRAKPQDGRHP*CDHSRS
Trigger: GGACCTGCTATGGTCACACCAGGGGTGGCGACCATC...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp ATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACATCCCGGCTGCTCCTCTaGACGTCCAGCTGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: IYTSSKQKLHRERSTLNTSRLLL*TSSWRP
Trigger: GGGCCTCCAGCTGGACGTGCAGAGGAGCAGCCGGGA...TGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGGCGAGTGGGAGCCACTaGACCGGGAGTCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEASGSH*TGSHCC
Trigger: ACAGCAGTGACTCCCGGTCCAGTGGCTCCCACTCGC...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAACTGGGCGAGTGCGAGTaGGAGCCACTGGACCGGGAG +
Preference number: 4 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQLGECE*EPLDRE
Trigger: CTCCCGGTCCAGTGGCTCCCACTCGCACTCGCCCAG...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CCGAATTGCCTACAAAATCGTTTGCTTGATTATAGACTGGAATGGATCAAGACACTCACGGGGGCCTGCTaGGCCAGGTTAGAGCTGCGG +
Preference number: 4 (lower is better)
Translates to: PNCLQNRLLDYRLEWIKTLTGAC*ARLELR
Trigger: CCGCAGCTCTAACCTGGCCCAGCAGGCCCCCGTGAG...TGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGGGCGGACAGAAGGCTTaGTGGAAGGGGTCCGTCGGA +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEGGQKA*WKGSVG
Trigger: TCCGACGGACCCCTTCCACCAAGCCTTCTGTCCGCC...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGGTTCCTCAGGGATACTaGGCTTTGGGCCTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: MHNASATLSRQDWRAKPQVPQGY*ALGLEV
Trigger: CACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAAC...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGAGAACTGCCTCAGCTTaGCCTCGATGCTCCGGTGCC +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSERTASA*PRCSGA
Trigger: GGCACCGGAGCATCGAGGCCAAGCTGAGGCAGTTCT...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACCCTCACCAGGCCTGGTaGCAGCTGACACCGTCATGC +
Preference number: 4 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDPHQAW*QLTPSC
Trigger: GCATGACGGTGTCAGCTGCCACCAGGCCTGGTGAGG...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGCTGTTATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTACTGGGCTTTGGGCCTaGAAGTGGAGGGTTGACGGG +
Preference number: 4 (lower is better)
Translates to: RCYLYKFQTKTAQGEVNSTGLWA*KWRVDG
Trigger: CCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGT...AGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGCTGTTATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTGGAGACAGTGGCACTTaGGGGGTCCCTTTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: RCYLYKFQTKTAQGEVNSGDSGT*GVPFLV
Trigger: GACCAGGAAAGGGACCCCCCAAGTGCCACTGTCTCC...AGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGGCATGCACATTCTGGTaGGAGCTGAGCCGATCTCCC +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEACTFW*ELSRSP
Trigger: GGGAGATCGGCTCAGCTCTCACCAGAATGTGCATGC...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACGAGGAGGGCAGCTTGTaGGGGTCCATGGTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYEEGSL*GSMVRL
Trigger: GAGCCTGACCATGGACCCTCACAAGCTGCCCTCCTC...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGCAGCTGACACCGTCATaGTCCTTGGTCTCTGCGCCT +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEQLTPS*SLVSAP
Trigger: AGGCGCAGAGACCAAGGAGCATGACGGTGTCAGCTG...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp CAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAAGCCTCGATGCTCCGGTaGCGCATGCACATTCTGGTG +
Preference number: 4 (lower is better)
Translates to: QTKTAQGEVNSQYKLATKASMLR*RMHILV
Trigger: CACCAGAATGTGCATGCGGCACCGGAGCATCGAGGC...TTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACTCGCTGATGATGGTCTaGAAGAGGCCTCCAAGCGCG +
Preference number: 4 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDSLMMV*KRPPSA
Trigger: CGCGCTTGGAGGCCTCTTCCAGACCATCATCAGCGA...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACGGACAGAAGGCTTGGTaGAAGGGGTCCGTCGGATGG +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYGQKAW*KGSVGW
Trigger: CCATCCGACGGACCCCTTCCACCAAGCCTTCTGTCC...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGAGGGATACTGGGCTTTaGGCCTGGAAGTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSERDTGL*AWKWRV
Trigger: AACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCT...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CCGAATTGCCTACAAAATCGTTTGCTTGATTATAGACTGGAATGGATCAAGACACCTGAGGACTTTCTCTaGGGCTCAGGTCTGCGGGGT +
Preference number: 4 (lower is better)
Translates to: PNCLQNRLLDYRLEWIKTPEDFL*GSGLRG
Trigger: ACCCCGCAGACCTGAGCCCCAGAGAAAGTCCTCAGG...TGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTCACGCCCCTCCGGATaGCGTTCAACATGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSESRPSG*RSTCLL
Trigger: GAGAAGACATGTTGAACGCCATCCGGAGGGGCGTGA...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp CGCTGTTATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTGGACAGTTGGGGTTTTaGCAGGGATCACTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: RCYLYKFQTKTAQGEVNSGQLGF*QGSLVS
Trigger: AGACACCAGTGATCCCTGTCAAAACCCCAACTGTCC...AGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATAACAGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGGACTGGAAGGCGTCCTaGGATATGAATCCTGAGTCG +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEDWKAS*DMNPES
Trigger: CGACTCAGGATTCATATCCCAGGACGCCTTCCAGTC...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAATTCTCTTTGCGGCGCTaGAGGGTGTTCACCAGTGGC +
Preference number: 4 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQFSLRR*RVFTSG
Trigger: GCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAA...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp ATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAATATTGCTGACACCCTaGGGCCCCTCCCCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: IYTSSKQKLHRERSTLNTILLTP*GPSPAD
Trigger: ATCTGCAGGGGAGGGGCCCCAGGGTGTCAGCAATAT...TGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTTCAGCCTCGCTCTCTaGAATCGCCTGTCTGTGTTC +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEFSLAL*NRLSVF
Trigger: GAACACAGACAGGCGATTCCAGAGAGCGAGGCTGAA...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp CATCTCAAGCATCATATGCACAATGCATCAGCTACTTaGAGTCGTCAAGATTGGCGGGCTAAACCACAGGCA +
Preference number: 4 (lower is better)
Translates to: HLKHHMHNASAT*SRQDWRAKPQA
Trigger: TGCCTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCATATGATGCTTGAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGTTCCGGCTTTGTTTATaGAGTCTTCCCAAACTGGAT +
Preference number: 4 (lower is better)
Translates to: MHNASATLSRQDWRAKPQFRLCL*SLPKLD
Trigger: ATCCAGTTTGGGAAGACTTCATAAACAAAGCCGGAA...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACATAGGGTCCTGGCTTTaGCCAGTCCTTCCAGCTAGG +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYIGSWL*PVLPAR
Trigger: CCTAGCTGGAAGGACTGGGCAAAGCCAGGACCCTAT...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGCTCTTCCTCGATCACTaGCCGCAGCATAGAGATGAA +
Preference number: 4 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSELFLDH*PQHRDE
Trigger: TTCATCTCTATGCTGCGGCCAGTGATCGAGGAAGAG...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAACTGGTCATAGGGTCCTaGCTTTGCCCAGTCCTTCCA +
Preference number: 4 (lower is better)
Translates to: QTKTAQGEVNSQYKLATKLVIGS*LCPVLP
Trigger: TGGAAGGACTGGGCAAAGCCAGGACCCTATGACCAG...TTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACTTGAGGCTGGACGCTTaGCTTGGAACATCCGCCTGT +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYLRLDA*LGTSAC
Trigger: ACAGGCGGATGTTCCAAGCCAAGCGTCCAGCCTCAA...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp GTCAAGATTGGCGGGCTAAACCACAGGCACTACTGTTaGCTTCGTCTGCAAAAGGAGCTTGTTTTTCAAAGA +
Preference number: 4 (lower is better)
Translates to: VKIGGLNHRHYC*LRLQKELVFQR
Trigger: TCTTTGAAAAACAAGCTCCTTTTGCAGACGAAGCAAACAGTAGTGCCTGTGGTTTAGCCCGCCAATCTTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAACAAGAAGGCAGCTGCTaGTACTACTGTTGTCCGCAG +
Preference number: 4 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQQEGSC*YYCCPQ
Trigger: CTGCGGACAACAGTAGTAGCAGCAGCTGCCTTCTTG...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACGTCCAAGAAGGCAGCTaGTGCTACTACTGTTGTCCG +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYVQEGS*CYYCCP
Trigger: CGGACAACAGTAGTAGCAGCAGCTGCCTTCTTGGAC...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp ATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAAAGCACTGGAGAACTaGCTCAGCTTGGCCTCGATG +
Preference number: 4 (lower is better)
Translates to: IYTSSKQKLHRERSTLNTKALEN*LSLASM
Trigger: CATCGAGGCCAAGCTGAGGCAGTTCTCCAGTGCTTT...TGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp CCGAATTGCCTACAAAATCGTTTGCTTGATTATAGACTGGAATGGATCAAGACAGACTTGTCGAATTCTTaGTGCTCTGCCTCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: PNCLQNRLLDYRLEWIKTDLSNS*CSASWS
Trigger: CGACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTC...TGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAATGCTGCTCTGCCTCCTaGTCGCCACTTACAGAGAAA +
Preference number: 4 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQCCSAS*SPLTEK
Trigger: TTTCTCTGTAAGTGGCGACCAGGAGGCAGAGCAGCA...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp CAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAAGAGGTCTGGGACAGTTaGGGTTTTGACAGGGATCAC +
Preference number: 4 (lower is better)
Translates to: QTKTAQGEVNSQYKLATKEVWDS*GFDRDH
Trigger: GTGATCCCTGTCAAAACCCCAACTGTCCCAGACCTC...TTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR TCA 90 bp CCGAATTGCCTACAAAATCGTTTGCTTGATTATAGACTGGAATGGATCAAGACATCCTCCGATATGGTCTaGAGGTGGGTAATCTCTCCT +
Preference number: 4 (lower is better)
Translates to: PNCLQNRLLDYRLEWIKTSSDMV*RWVISP
Trigger: AGGAGAGATTACCCACCTTCAGACCATATCGGAGGA...TGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp AAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAATCACAACTGAGCGATCGTTGGTaGTCGTCTTCTTCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: KTAQGEVNSQYKLATKSQLSDRW*SSSSAS
Trigger: TGAAGCTGAAGAAGACGACCACCAACGATCGCTCAG...TTGTGATTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACGAAGTCTTCCCAAACTaGATAGCTCCCCTTCATGTC +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYEVFPN*IAPLHV
Trigger: GACATGAAGGGGAGCTATCCAGTTTGGGAAGACTTC...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp AAGTCAGACTCCCAGTTGACAGTAAATAAATCCACTTaGCTCCGGTGTTTAGAAGCCAATCAACTGTCCTTA +
Preference number: 4 (lower is better)
Translates to: KSDSQLTVNKST*LRCLEANQLSL
Trigger: TAAGGACAGTTGATTGGCTTCTAAACACCGGAGCAAAGTGGATTTATTTACTGTCAACTGGGAGTCTGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp AGGTTTAAAATACCGCTTGTCTCTATTAGAATGACCTaGCAGCGATGTCTGCATCTGCAAAACCATCTCAAG +
Preference number: 4 (lower is better)
Translates to: RFKIPLVSIRMT*QRCLHLQNHLK
Trigger: CTTGAGATGGTTTTGCAGATGCAGACATCGCTGCAAGGTCATTCTAATAGAGACAAGCGGTATTTTAAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR GCA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACTCCTCCATTTGTTCTTaGAGTGGGTTTATCAGGCAA +
Preference number: 4 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDSSICS*SGFIRQ
Trigger: TTGCCTGATAAACCCACTGCAAGAACAAATGGAGGA...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CCA 90 bp TATCTATACAAGTTCCAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACCACTGTTCCTTGGAATaGTGGAGGACTTGTCGAATT +
Preference number: 4 (lower is better)
Translates to: YLYKFQTKTAQGEVNSQYHCSLE*WRTCRI
Trigger: AATTCGACAAGTCCTCCACCATTCCAAGGAACAGTG...GTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTGGAACTTGTATAGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp AGAGCAGGATTCCGAATTGCCTACAAAATCGTTTGCTaGATTATAGACTGGAATGGATCAAGACAAATTAGG +
Preference number: 4 (lower is better)
Translates to: RAGFRIAYKIVC*IIDWNGSRQIR
Trigger: CCTAATTTGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGGAATCCTGCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
3UTR CAA 72 bp GAAAAGAGCAGGATTCCGAATTGCCTACAAAATCGTTaGCTTGATTATAGACTGGAATGGATCAAGACAAAT +
Preference number: 4 (lower is better)
Translates to: EKSRIPNCLQNR*LDYRLEWIKTN
Trigger: ATTTGTCTTGATCCATTCCAGTCTATAATCAAGCAAACGATTTTGTAGGCAATTCGGAATCCTGCTCTTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp GGGCGAGTGTCAGTTCCTCACAGGCCGCCATCTCCTCACCAGGCCTaGTGGCAGCTGACACCGTCATGCTCCTTGGTCTCTGCGCCTCTT +
Preference number: 5 (lower is better)
Translates to: GRVSVPHRPPSPHQA*WQLTPSCSLVSAPL
Trigger: AAGAGGCGCAGAGACCAAGGAGCATGACGGTGTCAGCTGCCACCAGGCCTGGTGAGGAGATGGCGGCCTGTGAGGAACTGACACTCGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp CGAGTGTCAGTTCCTCACAGGCCGCCATCTCCTCACCAGGCCTGGTaGCAGCTGACACCGTCATGCTCCTTGGTCTCTGCGCCTCTTCAG +
Preference number: 5 (lower is better)
Translates to: RVSVPHRPPSPHQAW*QLTPSCSLVSAPLQ
Trigger: CTGAAGAGGCGCAGAGACCAAGGAGCATGACGGTGTCAGCTGCCACCAGGCCTGGTGAGGAGATGGCGGCCTGTGAGGAACTGACACTCG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp CCCTCCGGATGGCGTTCAACATGTCTTCTCCCTGAGGACTTTCTCTaGGGCTCAGGTCTGCGGGGTCACTCTCTGGAATCGGGCCTGGGG +
Preference number: 5 (lower is better)
Translates to: PSGWRSTCLLPEDFL*GSGLRGHSLESGLG
Trigger: CCCCAGGCCCGATTCCAGAGAGTGACCCCGCAGACCTGAGCCCCAGAGAAAGTCCTCAGGGAGAAGACATGTTGAACGCCATCCGGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp TGCAGGTGGCCCTCCTGTCGTAGTGGGTCCTCCCCCATTAGAGTCTaGCTCACGTTTCTCTTTGCGGCGCTGGAGGGTGTTCACCAGTGG +
Preference number: 5 (lower is better)
Translates to: CRWPSCRSGSSPIRV*LTFLFAALEGVHQW
Trigger: CCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGACTCTAATGGGGGAGGACCCACTACGACAGGAGGGCCACCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
CDS CCA 90 bp TTTGCGGCGCTGGAGGGTGTTCACCAGTGGCTGGTCATAGGGTCCTaGCTTTGCCCAGTCCTGGTTGGCAGCTTCAGGTGGCATGGGAGA +
Preference number: 5 (lower is better)
Translates to: FAALEGVHQWLVIGS*LCPVLVGSFRWHGR
Trigger: TCTCCCATGCCACCTGAAGCTGCCAACCAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227045.2
CDS CCA 90 bp GTCTGGCTCACGTTTCTCTTTGCGGCGCTGGAGGGTGTTCACCAGTaGCTGGTCATAGGGTCCTGGCTTTGCCCAGTCCTGGTTGGCAGC +
Preference number: 5 (lower is better)
Translates to: VWLTFLFAALEGVHQ*LVIGSWLCPVLVGS
Trigger: GCTGCCAACCAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227045.2
CDS-3UTR CAA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGTGCTGAGCGATCGTaGGTGGTCGTCTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPGAERS*VVVFFS
Trigger: GCTGAAGAAGACGACCACCAACGATCGCTCAGCACC...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp GCTTCAGGTGGCATGGGAGAGGGTGACTTGGACTGGAAGGCGTCCTaGGATATGAATCCTGAGTCGTGGGAGGACACGCTGGACAGCCTC +
Preference number: 5 (lower is better)
Translates to: ASGGMGEGDLDWKAS*DMNPESWEDTLDSL
Trigger: GAGGCTGTCCAGCGTGTCCTCCCACGACTCAGGATTCATATCCCAGGACGCCTTCCAGTCCAAGTCACCCTCTCCCATGCCACCTGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
ENSMUST00000228067.2
CDS CCA 90 bp GTCTGGCTCACGTTTCTCTTTGCGGCGCTGGAGGGTGTTCACCAGTaGCTGGTCATAGGGTCCTGGCTTTGCCCAGTCCTTCCAGCTAGG +
Preference number: 5 (lower is better)
Translates to: VWLTFLFAALEGVHQ*LVIGSWLCPVLPAR
Trigger: CCTAGCTGGAAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000227196.2
CDS CCA 90 bp GGGATACTGGGCTTTGGGCCTGGAAGTGGAGGGTTGACGGGTGCTTaGCCACTCCACAAGGAAGAGGGTATATTGCTGACACCCTGGGGC +
Preference number: 5 (lower is better)
Translates to: GILGFGPGSGGLTGA*PLHKEEGILLTPWG
Trigger: GCCCCAGGGTGTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGGGGACAGTTGGGGTTTaGACAGGGATCACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPGTVGV*TGITGV
Trigger: GACACCAGTGATCCCTGTCAAAACCCCAACTGTCCC...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp CGCCTGTCTGTGTTCCTCAGGGATACTGGGCTTTGGGCCTGGAAGTaGAGGGTTGACGGGTGCTTGGCCACTCCACAAGGAAGAGGGTAT +
Preference number: 5 (lower is better)
Translates to: RLSVFLRDTGLWAWK*RVDGCLATPQGRGY
Trigger: ATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAGGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp GCTCTCTGGAATCGCCTGTCTGTGTTCCTCAGGGATACTGGGCTTTaGGCCTGGAAGTGGAGGGTTGACGGGTGCTTGGCCACTCCACAA +
Preference number: 5 (lower is better)
Translates to: ALWNRLSVFLRDTGL*AWKWRVDGCLATPQ
Trigger: TTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAGGCGATTCCAGAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp AATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTTGAAATGGGAGAGGGTGACTaGGACTGGAAGGCGTCCTGG +
Preference number: 5 (lower is better)
Translates to: NVRRVLSAAVLPRALPFEMGEGD*DWKASW
Trigger: CCAGGACGCCTTCCAGTCCAAGTCACCCTCTCCCAT...TTCAAAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTAGGGTTGACGGGTGCTaGGCCACTCCACAAGGAAGA +
Preference number: 5 (lower is better)
Translates to: PKCQACTVSCCAAEGLALRVDGC*ATPQGR
Trigger: TCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCT...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS GCA 90 bp CTCAGGGATACTGGGCTTTGGGCCTGGAAGTGGAGGGTTGACGGGTaGTTGGCCACTCCACAAGGAAGAGGGTATATTGCTGACACCCTG +
Preference number: 5 (lower is better)
Translates to: LRDTGLWAWKWRVDG*LATPQGRGYIADTL
Trigger: CAGGGTGTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp TGGAATCGCCTGTCTGTGTTCCTCAGGGATACTGGGCTTTGGGCCTaGAAGTGGAGGGTTGACGGGTGCTTGGCCACTCCACAAGGAAGA +
Preference number: 5 (lower is better)
Translates to: WNRLSVFLRDTGLWA*KWRVDGCLATPQGR
Trigger: TCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAGGCGATTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 90 bp AGCGATCGTTGGTGGTCGTCTTCTTCAGCTTCACGCCCCTCCGGATaGCGTTCAACATGTCTTCTCCCTGAGGACTTTCTCTGGGGCTCA +
Preference number: 5 (lower is better)
Translates to: SDRWWSSSSASRPSG*RSTCLLPEDFLWGS
Trigger: TGAGCCCCAGAGAAAGTCCTCAGGGAGAAGACATGTTGAACGCCATCCGGAGGGGCGTGAAGCTGAAGAAGACGACCACCAACGATCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp ATGGGACCCACCAAGTCTCCTGCCCAAAATGTCAGGCGTGTACTGTCAGCTGCTGGCTGGACGCTTGGCTaGGAACATCCGCCTGTAAGA +
Preference number: 5 (lower is better)
Translates to: MGPTKSPAQNVRRVLSAAGWTLG*EHPPVR
Trigger: TCTTACAGGCGGATGTTCCAAGCCAAGCGTCCAGCC...AGCAGCTGACAGTACACGCCTGACATTTTGGGCAGGAGACTTGGTGGGTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGTTCCTCCATTTGTTCTaGCAGTGGGTTTATCAGGCA +
Preference number: 5 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPFLHLF*QWVYQA
Trigger: TGCCTGATAAACCCACTGCAAGAACAAATGGAGGAA...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGGGACTTGTCGAATTCTaGCTGCTCTGCCTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGGLVEF*LLCLLV
Trigger: GACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTCC...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CAGCATGCGCAGGACCGGGTGTGGATGCTGTGTGTGCGGTCAAGAGGAATGCCGCTGCATGGGACTCACTaGATAAACTACAGTGAGAAA +
Preference number: 5 (lower is better)
Translates to: QHAQDRVWMLCVRSRGMPLHGTH*INYSEK
Trigger: TTTCTCACTGTAGTTTATCAAGTGAGTCCCATGCAG...CGGCATTCCTCTTGACCGCACACACAGCATCCACACCCGGTCCTGCGCATGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGTGGGTAGGCCAGCCGTaGAGGCTGGACGCTTGGCTT +
Preference number: 5 (lower is better)
Translates to: MHNASATLSRQDWRAKPQWVGQP*RLDAWL
Trigger: AAGCCAAGCGTCCAGCCTCAACGGCTGGCCTACCCA...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGCCTGGAAGTGGAGGGTaGACGGGTGCTTGGCCACTC +
Preference number: 5 (lower is better)
Translates to: MHNASATLSRQDWRAKPQPGSGG*TGAWPL
Trigger: GAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGG...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGAAATCACCTGTTCACTaGAGGAGGGCAGCTTGTGAG +
Preference number: 5 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGKSPVH*RRAACE
Trigger: CTCACAAGCTGCCCTCCTCAAGTGAACAGGTGATTT...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CCAAAATGTCAGGCGTGTACTGTCAGCTGCTGTGCTGCCGAGGGCCTTGCCCTTCTTCCATTCCTCCATTaGTTCTTGCAGTGGGTTTAT +
Preference number: 5 (lower is better)
Translates to: PKCQACTVSCCAAEGLALLPFLH*FLQWVY
Trigger: ATAAACCCACTGCAAGAACAAATGGAGGAATGGAAG...AAGGGCAAGGCCCTCGGCAGCACAGCAGCTGACAGTACACGCCTGACATTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp ATGCACAATGCATCAGCTACTTTGAGTCGTCAAGATTGGCGGGCTAAACCACAGTCTTCGATGAGTGCCTaGCGCACAGCCTGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: MHNASATLSRQDWRAKPQSSMSA*RTACFS
Trigger: GGAGAAGCAGGCTGTGCGCAAGGCACTCATCGAAGA...CTGTGGTTTAGCCCGCCAATCTTGACGACTCAAAGTAGCTGATGCATTGTGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp TCAAAATATCTGGGCTTTTCAACGCACCCAGCCTGCTGGGCACAGTTAAGTAAACGGGAGTCACTGCTGTaGACGCTGTTCAGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SKYLGFSTHPACWAQLSKRESLL*TLFRLL
Trigger: CAGCAGCCTGAACAGCGTCAACAGCAGTGACTCCCG...TTTACTTAACTGTGCCCAGCAGGCTGGGTGCGTTGAAAAGCCCAGATATTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 90 bp TTGAGGCTGGACGCTTGGCTTGGAACATCCGCCTGTAAGACTGGCTaGTGTCACTGTTCCTTGGAATGGTGGAGGACTTGTCGAATTCTT +
Preference number: 5 (lower is better)
Translates to: LRLDAWLGTSACKTG*CHCSLEWWRTCRIL
Trigger: AAGAATTCGACAAGTCCTCCACCATTCCAAGGAACAGTGACATCAGCCAGTCTTACAGGCGGATGTTCCAAGCCAAGCGTCCAGCCTCAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CGTTTTCTGAATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGGAGAACTGCCTCAGCTaGGCCTCGATGCTCCGGTGC +
Preference number: 5 (lower is better)
Translates to: RFLNCLTPLDVFGFSGSEENCLS*ASMLRC
Trigger: GCACCGGAGCATCGAGGCCAAGCTGAGGCAGTTCTC...CTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAATTCAGAAAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp GAAAGTAAAGAAGGGACTATGTCTACCCATGGCAGCAGCATGCGCAGGACCGGGCTTTCTTATATTCTTTaGCGTGGTCCTTGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: ESKEGTMSTHGSSMRRTGLSYIL*RGPCPA
Trigger: AGCTGGACAAGGACCACGCAAAAGAATATAAGAAAG...CCCGGTCCTGCGCATGCTGCTGCCATGGGTAGACATAGTCCCTTCTTTACTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp ATTGCCTTACCCCTTTGGATGTATTTGGATTCAGTGGAAGTGAGTATAAGAGACGTTGAGGCTGGACGCTaGGCTTGGAACATCCGCCTG +
Preference number: 5 (lower is better)
Translates to: IALPLWMYLDSVEVSIRDVEAGR*AWNIRL
Trigger: CAGGCGGATGTTCCAAGCCAAGCGTCCAGCCTCAAC...GTCTCTTATACTCACTTCCACTGAATCCAAATACATCCAAAGGGGTAAGGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS-3UTR CAA 90 bp CAAACAAAAACTGCACAGGGAGAGGTCAACTCTCAATACAAACTAGCAACTAAACAGGGATACTGGGCTTaGGGCCTGGAAGTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: QTKTAQGEVNSQYKLATKQGYWA*GLEVEG
Trigger: ACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTG...TTTAGTTGCTAGTTTGTATTGAGAGTTGACCTCTCCCTGTGCAGTTTTTGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp TGGCCTCGATGCTCCGGTGCCGCATGCACATTCTGGTaGGAGCTGAGCCGATCTCCCGGGTACCACCACGTG +
Preference number: 6 (lower is better)
Translates to: WPRCSGAACTFW*ELSRSPGYHHV
Trigger: CACGTGGTGGTACCCGGGAGATCGGCTCAGCTCTCACCAGAATGTGCATGCGGCACCGGAGCATCGAGGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp ACAGGCCGCCATCTCCTCACCAGGCCTGGTGGCAGCTaGCACCGTCATGCTCCTTGGTCTCTGCGCCTCTTC +
Preference number: 6 (lower is better)
Translates to: TGRHLLTRPGGS*HRHAPWSLRLF
Trigger: GAAGAGGCGCAGAGACCAAGGAGCATGACGGTGTCAGCTGCCACCAGGCCTGGTGAGGAGATGGCGGCCTGT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
CDS CCA 72 bp TCCGACGCTTCGGAGGAGGCCGAGCTGGACGAGTTCTaGTTGGCAGCTTCAGGTGGCATGGGAGAGGGTGAC +
Preference number: 6 (lower is better)
Translates to: SDASEEAELDEF*LAASGGMGEGD
Trigger: GTCACCCTCTCCCATGCCACCTGAAGCTGCCAACCAGAACTCGTCCAGCTCGGCCTCCTCCGAAGCGTCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227196.2
ENSMUST00000228067.2
CDS CAA 90 bp GGCGCTGGAGGGTGTTCACCAGTGGCTGGTCATAGGGTCCTGGCTTaGCCCAGTCCTGGTTGGCAGCTTCAGGTGGCATGGGAGAGGGTG +
Preference number: 6 (lower is better)
Translates to: GAGGCSPVAGHRVLA*PSPGWQLQVAWERV
Trigger: CACCCTCTCCCATGCCACCTGAAGCTGCCAACCAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227045.2
CDS CAA 72 bp GACGCTTCGGAGGAGGCCGAGCTGGACGAGTTCTGGTaGGCAGCTTCAGGTGGCATGGGAGAGGGTGACTTG +
Preference number: 6 (lower is better)
Translates to: DASEEAELDEFW*AASGGMGEGDL
Trigger: CAAGTCACCCTCTCCCATGCCACCTGAAGCTGCCAACCAGAACTCGTCCAGCTCGGCCTCCTCCGAAGCGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227196.2
ENSMUST00000228067.2
CDS GCA 72 bp GGTGTTCACCAGTGGCTGGTCATAGGGTCCTGGCTTTaGCCAGTCCTGGTTGGCAGCTTCAGGTGGCATGGG +
Preference number: 6 (lower is better)
Translates to: GVHQWLVIGSWL*PVLVGSFRWHG
Trigger: CCCATGCCACCTGAAGCTGCCAACCAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227045.2
CDS CCA 72 bp TCAGTTCCTCACAGGCCGCCATCTCCTCACCAGGCCTaGTGGCAGCTGACACCGTCATGCTCCTTGGTCTCT +
Preference number: 6 (lower is better)
Translates to: SVPHRPPSPHQA*WQLTPSCSLVS
Trigger: AGAGACCAAGGAGCATGACGGTGTCAGCTGCCACCAGGCCTGGTGAGGAGATGGCGGCCTGTGAGGAACTGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CAA 72 bp GGGTGTTCACCAGTGGCTGGTCATAGGGTCCTGGCTTaGCCCAGTCCTGGTTGGCAGCTTCAGGTGGCATGG +
Preference number: 6 (lower is better)
Translates to: GCSPVAGHRVLA*PSPGWQLQVAW
Trigger: CCATGCCACCTGAAGCTGCCAACCAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227045.2
CDS TCA 72 bp GCGAGTGGGAGCCACTGGACCGGGAGTCACTGCTGTTaGCGCTGTTCAGGCTGCTGCAGACACTTGACTTTC +
Preference number: 6 (lower is better)
Translates to: ASGSHWTGSHCC*RCSGCCRHLTF
Trigger: GAAAGTCAAGTGTCTGCAGCAGCCTGAACAGCGTCAACAGCAGTGACTCCCGGTCCAGTGGCTCCCACTCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
ENSMUST00000228067.2
CDS CCA 72 bp GGCATGGGAGAGGGTGACTTGGACTGGAAGGCGTCCTaGGATATGAATCCTGAGTCGTGGGAGGACACGCTG +
Preference number: 6 (lower is better)
Translates to: GMGEGDLDWKAS*DMNPESWEDTL
Trigger: CAGCGTGTCCTCCCACGACTCAGGATTCATATCCCAGGACGCCTTCCAGTCCAAGTCACCCTCTCCCATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
ENSMUST00000228067.2
CDS CCA 72 bp CCCTCCTGTCGTAGTGGGTCCTCCCCCATTAGAGTCTaGCTCACGTTTCTCTTTGCGGCGCTGGAGGGTGTT +
Preference number: 6 (lower is better)
Translates to: PSCRSGSSPIRV*LTFLFAALEGV
Trigger: AACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGACTCTAATGGGGGAGGACCCACTACGACAGGAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
CDS CCA 72 bp GTGTTCCTCAGGGATACTGGGCTTTGGGCCTGGAAGTaGAGGGTTGACGGGTGCTTGGCCACTCCACAAGGA +
Preference number: 6 (lower is better)
Translates to: VFLRDTGLWAWK*RVDGCLATPQG
Trigger: TCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp CTGTCTGTGTTCCTCAGGGATACTGGGCTTTGGGCCTaGAAGTGGAGGGTTGACGGGTGCTTGGCCACTCCA +
Preference number: 6 (lower is better)
Translates to: LSVFLRDTGLWA*KWRVDGCLATP
Trigger: TGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp AATCGCCTGTCTGTGTTCCTCAGGGATACTGGGCTTTaGGCCTGGAAGTGGAGGGTTGACGGGTGCTTGGCC +
Preference number: 6 (lower is better)
Translates to: NRLSVFLRDTGL*AWKWRVDGCLA
Trigger: GGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAGACAGGCGATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CAA 72 bp GGTCCTCCCCCATTAGAGTCTGGCTCACGTTTCTCTTaGCGGCGCTGGAGGGTGTTCACCAGTGGCTGGTCA +
Preference number: 6 (lower is better)
Translates to: GPPPLESGSRFS*RRWRVFTSGWS
Trigger: TGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGTGAGCCAGACTCTAATGGGGGAGGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080371.8
ENSMUST00000227045.2
ENSMUST00000227196.2
CDS CAA 90 bp AGGGATACTGGGCTTTGGGCCTGGAAGTGGAGGGTTGACGGGTGCTaGGCCACTCCACAAGGAAGAGGGTATATTGCTGACACCCTGGGG +
Preference number: 6 (lower is better)
Translates to: RDTGLWAWKWRVDGC*ATPQGRGYIADTLG
Trigger: CCCCAGGGTGTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp CTGGAGGGTGTTCACCAGTGGCTGGTCATAGGGTCCTaGCTTTGCCCAGTCCTTCCAGCTAGGGATCTGAGA +
Preference number: 6 (lower is better)
Translates to: LEGVHQWLVIGS*LCPVLPARDLR
Trigger: TCTCAGATCCCTAGCTGGAAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000227196.2
CDS CCA 72 bp ACGTTTCTCTTTGCGGCGCTGGAGGGTGTTCACCAGTaGCTGGTCATAGGGTCCTGGCTTTGCCCAGTCCTT +
Preference number: 6 (lower is better)
Translates to: TFLFAALEGVHQ*LVIGSWLCPVL
Trigger: AAGGACTGGGCAAAGCCAGGACCCTATGACCAGCCACTGGTGAACACCCTCCAGCGCCGCAAAGAGAAACGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000227196.2
CDS CAA 72 bp GGGCTTTGGGCCTGGAAGTGGAGGGTTGACGGGTGCTaGGCCACTCCACAAGGAAGAGGGTATATTGCTGAC +
Preference number: 6 (lower is better)
Translates to: GLWAWKWRVDGC*ATPQGRGYIAD
Trigger: GTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CAA 90 bp CTGTGTTCCTCAGGGATACTGGGCTTTGGGCCTGGAAGTGGAGGGTaGACGGGTGCTTGGCCACTCCACAAGGAAGAGGGTATATTGCTG +
Preference number: 6 (lower is better)
Translates to: LCSSGILGFGPGSGG*TGAWPLHKEEGILL
Trigger: CAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCCCAGTATCCCTGAGGAACACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp GGCTTTGGGCCTGGAAGTGGAGGGTTGACGGGTGCTTaGCCACTCCACAAGGAAGAGGGTATATTGCTGACA +
Preference number: 6 (lower is better)
Translates to: GFGPGSGGLTGA*PLHKEEGILLT
Trigger: TGTCAGCAATATACCCTCTTCCTTGTGGAGTGGCCAAGCACCCGTCAACCCTCCACTTCCAGGCCCAAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp TGGCGTTCAACATGTCTTCTCCCTGAGGACTTTCTCTaGGGCTCAGGTCTGCGGGGTCACTCTCTGGAATCG +
Preference number: 6 (lower is better)
Translates to: WRSTCLLPEDFL*GSGLRGHSLES
Trigger: CGATTCCAGAGAGTGACCCCGCAGACCTGAGCCCCAGAGAAAGTCCTCAGGGAGAAGACATGTTGAACGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp TGGTGGTCGTCTTCTTCAGCTTCACGCCCCTCCGGATaGCGTTCAACATGTCTTCTCCCTGAGGACTTTCTC +
Preference number: 6 (lower is better)
Translates to: WWSSSSASRPSG*RSTCLLPEDFL
Trigger: GAGAAAGTCCTCAGGGAGAAGACATGTTGAACGCCATCCGGAGGGGCGTGAAGCTGAAGAAGACGACCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp TGGCTTTGCCCAGTCCTTCCAGCTAGGGATCTGAGATaGCGGGAACATGCCGGGCCCAATGGTGTAATAATG +
Preference number: 6 (lower is better)
Translates to: WLCPVLPARDLR*REHAGPNGVIM
Trigger: CATTATTACACCATTGGGCCCGGCATGTTCCCGTCATCTCAGATCCCTAGCTGGAAGGACTGGGCAAAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000227196.2
CDS CCA 72 bp CCTGTTCACTTGAGGAGGGCAGCTTGTGAGGGTCCATaGTCAGGCTCTTCAGATCCTCCGATATGGTCTGAA +
Preference number: 6 (lower is better)
Translates to: PVHLRRAACEGP*SGSSDPPIWSE
Trigger: TTCAGACCATATCGGAGGATCTGAAGAGCCTGACCATGGACCCTCACAAGCTGCCCTCCTCAAGTGAACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000228067.2
CDS CCA 72 bp GAGGTCTGGGACAGTTGGGGTTTTGACAGGGATCACTaGTGTCTTGATGGGAATAGGACCAGCTCCGATGGT +
Preference number: 6 (lower is better)
Translates to: EVWDSWGFDRDH*CLDGNRTSSDG
Trigger: ACCATCGGAGCTGGTCCTATTCCCATCAAGACACCAGTGATCCCTGTCAAAACCCCAACTGTCCCAGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CAA 72 bp TGGCTGATGTCACTGTTCCTTGGAATGGTGGAGGACTaGTCGAATTCTTGCTGCTCTGCCTCCTGGTCGCCA +
Preference number: 6 (lower is better)
Translates to: WLMSLFLGMVED*SNSCCSASWSP
Trigger: TGGCGACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTCCTCCACCATTCCAAGGAACAGTGACATCAGCCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp GCTTCTCCGTTTCCTCCAACAGGAGGTATTTATCGTTaGCATCCTGGAGAGCGCTGTCCAACTGAGGCTGGA +
Preference number: 6 (lower is better)
Translates to: ASPFPPTGGIYR*HPGERCPTEAG
Trigger: TCCAGCCTCAGTTGGACAGCGCTCTCCAGGATGTCAACGATAAATACCTCCTGTTGGAGGAAACGGAGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp TCCAAAATCACCTGTTCACTTGAGGAGGGCAGCTTGTaGGGGTCCATGGTCAGGCTCTTCAGATCCTCCGAT +
Preference number: 6 (lower is better)
Translates to: SKITCSLEEGSL*GSMVRLFRSSD
Trigger: ATCGGAGGATCTGAAGAGCCTGACCATGGACCCTCACAAGCTGCCCTCCTCAAGTGAACAGGTGATTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080371.8
ENSMUST00000228067.2
CDS TCA 72 bp GACGCTTGGCTTGGAACATCCGCCTGTAAGACTGGCTaGTGTCACTGTTCCTTGGAATGGTGGAGGACTTGT +
Preference number: 6 (lower is better)
Translates to: DAWLGTSACKTG*CHCSLEWWRTC
Trigger: ACAAGTCCTCCACCATTCCAAGGAACAGTGACATCAGCCAGTCTTACAGGCGGATGTTCCAAGCCAAGCGTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS GCA 72 bp CTGTTCCTTGGAATGGTGGAGGACTTGTCGAATTCTTaGTGCTCTGCCTCCTGGTCGCCACTTACAGAGAAA +
Preference number: 6 (lower is better)
Translates to: LFLGMVEDLSNS*CSASWSPLTEK
Trigger: TTTCTCTGTAAGTGGCGACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTCCTCCACCATTCCAAGGAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp CATCCGCCTGTAAGACTGGCTGATGTCACTGTTCCTTaGAATGGTGGAGGACTTGTCGAATTCTTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: HPPVRLADVTVP*NGGGLVEFLLL
Trigger: GAGCAGCAAGAATTCGACAAGTCCTCCACCATTCCAAGGAACAGTGACATCAGCCAGTCTTACAGGCGGATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS TCA 72 bp TCCGCAGCTGGGACTGTAGCTTTCCGGCTTTGTTTATaGAGTCTTCCCAAACTGGATAGCTCCCCTTCATGT +
Preference number: 6 (lower is better)
Translates to: SAAGTVAFRLCL*SLPKLDSSPSC
Trigger: ACATGAAGGGGAGCTATCCAGTTTGGGAAGACTTCATAAACAAAGCCGGAAAGCTACAGTCCCAGCTGCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS GCA 72 bp TGGAATGGTGGAGGACTTGTCGAATTCTTGCTGCTCTaGCTCCTGGTCGCCACTTACAGAGAAATAATCGTA +
Preference number: 6 (lower is better)
Translates to: WNGGGLVEFLLL*LLVATYREIIV
Trigger: TACGATTATTTCTCTGTAAGTGGCGACCAGGAGGCAGAGCAGCAAGAATTCGACAAGTCCTCCACCATTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS GCA 72 bp TGGTTGGCCACTTTCTTCCATTCCTCCATTTGTTCTTaGAGTGGGTTTATCAGGCAATCGATCAAAGCACTG +
Preference number: 6 (lower is better)
Translates to: WLATFFHSSICS*SGFIRQSIKAL
Trigger: CAGTGCTTTGATCGATTGCCTGATAAACCCACTGCAAGAACAAATGGAGGAATGGAAGAAAGTGGCCAACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8
CDS CCA 72 bp GGCCACTTTCTTCCATTCCTCCATTTGTTCTTGCAGTaGGTTTATCAGGCAATCGATCAAAGCACTGGAGAA +
Preference number: 6 (lower is better)
Translates to: GHFLPFLHLFLQ*VYQAIDQSTGE
Trigger: TTCTCCAGTGCTTTGATCGATTGCCTGATAAACCCACTGCAAGAACAAATGGAGGAATGGAAGAAAGTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080371.8