Pregenerated sensors for MTRFR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047635Ensembl transcript IDs: ENSMUST00000077376.3, ENSMUST00000111477.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCGAGTTGGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATTGGCTaGAACCTGCTGTGGCCGCAGACCTGGGCTCCCCACCCGTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: PSWQCPRARMGMPIG*NLLWPQTWAPHPSL Trigger: TAGAGACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCCAACTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS GCA 90 bp | GGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATTGGCTGAAACCTaGTGTGGCCGCAGACCTGGGCTCCCCACCCGTCTCTACCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: GSVPVPEWACPLAET*CGRRPGLPTRLYLD Trigger: GTCAAGGTAGAGACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CCA 90 bp | TATCCCGAGTTGGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATTaGCTGAAACCTGCTGTGGCCGCAGACCTGGGCTCCCCACCCGTC | + |
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Preference number: 5 (lower is better) Translates to: YPELAVSPCQNGHAH*LKPAVAADLGSPPV Trigger: GACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCCAACTCGGGATA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS GCA 90 bp | GCCTGCCACCTGTACTGTGCTGGCAGCCATTCCTGGGAAGAGCAGTaGTGGCTTCTCCTGAAGCCTGAGCCCCCACTTCCCAGAGCATAT | + |
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Preference number: 5 (lower is better) Translates to: ACHLYCAGSHSWEEQ*WLLLKPEPPLPRAY Trigger: ATATGCTCTGGGAAGTGGGGGCTCAGGCTTCAGGAGAAGCCAGCACTGCTCTTCCCAGGAATGGCTGCCAGCACAGTACAGGTGGCAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS GCA 90 bp | CGAGCTCACTCTCATTCAGGGGGAGCAGAGCAGGGTAGTCCTTCCTaGCTGCCACCTGTACTGTGCTGGCAGCCATTCCTGGGAAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: RAHSHSGGAEQGSPS*LPPVLCWQPFLGRA Trigger: TGCTCTTCCCAGGAATGGCTGCCAGCACAGTACAGGTGGCAGGCAGGAAGGACTACCCTGCTCTGCTCCCCCTGAATGAGAGTGAGCTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CCA 90 bp | TGCCACCTGTACTGTGCTGGCAGCCATTCCTGGGAAGAGCAGTGCTaGCTTCTCCTGAAGCCTGAGCCCCCACTTCCCAGAGCATATCCT | + |
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Preference number: 5 (lower is better) Translates to: CHLYCAGSHSWEEQC*LLLKPEPPLPRAYP Trigger: AGGATATGCTCTGGGAAGTGGGGGCTCAGGCTTCAGGAGAAGCCAGCACTGCTCTTCCCAGGAATGGCTGCCAGCACAGTACAGGTGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CCA 90 bp | GGCACGTGTTTGAGCACTACACAATTGCTGGTCTTGTTGGTGGCCTaGCCCCCTGGGCCATGTCCTTTCACGAACTGTTCTTCGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: GTCLSTTQLLVLLVA*PPGPCPFTNCSSSS Trigger: TGAGCTCGAAGAACAGTTCGTGAAAGGACATGGCCCAGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAAACACGTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CCA 90 bp | TTTGAGCACTACACAATTGCTGGTCTTGTTGGTGGCCTGGCCCCCTaGGCCATGTCCTTTCACGAACTGTTCTTCGAGCTCACTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: FEHYTIAGLVGGLAP*AMSFHELFFELTLI Trigger: AATGAGAGTGAGCTCGAAGAACAGTTCGTGAAAGGACATGGCCCAGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS TCA 90 bp | ACATCCACTTTCTCCTGGAGGACTTTCCGAGCTATCTTCCTGTTTTaGTCCACAGATCTTGTTTGGTGGCACTTGACCACAATGCCGGAG | + |
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Preference number: 5 (lower is better) Translates to: TSTFSWRTFRAIFLF*STDLVWWHLTTMPE Trigger: CTCCGGCATTGTGGTCAAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAGCTCGGAAAGTCCTCCAGGAGAAAGTGGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077376.3 |
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| CDS GCA 72 bp | CCCGTGCCAGAATGGGCATGCCCATTGGCTGAAACCTaGTGTGGCCGCAGACCTGGGCTCCCCACCCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: PVPEWACPLAET*CGRRPGLPTRL Trigger: GAGACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS TCA 72 bp | CAGTGTCCCCGTGCCAGAATGGGCATGCCCATTGGCTaGAACCTGCTGTGGCCGCAGACCTGGGCTCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: QCPRARMGMPIG*NLLWPQTWAPH Trigger: GTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CCA 72 bp | TTGGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATTaGCTGAAACCTGCTGTGGCCGCAGACCTGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: LAVSPCQNGHAH*LKPAVAADLGS Trigger: GGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CAA 72 bp | GTGGCCGCAGACCTGGGCTCCCCACCCGTCTCTACCTaGACCACAATGCCGGAGGGCACGTGTTTGAGCACT | + |
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Preference number: 6 (lower is better) Translates to: VAADLGSPPVST*TTMPEGTCLST Trigger: AGTGCTCAAACACGTGCCCTCCGGCATTGTGGTCAAGGTAGAGACGGGTGGGGAGCCCAGGTCTGCGGCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CAA 72 bp | GTTGGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATaGGCTGAAACCTGCTGTGGCCGCAGACCTGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: VGSVPVPEWACP*AETCCGRRPGL Trigger: GAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCCAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CAA 90 bp | TTATCCCGAGTTGGCAGTGTCCCCGTGCCAGAATGGGCATGCCCATaGGCTGAAACCTGCTGTGGCCGCAGACCTGGGCTCCCCACCCGT | + |
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Preference number: 6 (lower is better) Translates to: LSRVGSVPVPEWACP*AETCCGRRPGLPTR Trigger: ACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTTCAGCCAATGGGCATGCCCATTCTGGCACGGGGACACTGCCAACTCGGGATAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS GCA 72 bp | TCTCATTCAGGGGGAGCAGAGCAGGGTAGTCCTTCCTaGCTGCCACCTGTACTGTGCTGGCAGCCATTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SHSGGAEQGSPS*LPPVLCWQPFL Trigger: CAGGAATGGCTGCCAGCACAGTACAGGTGGCAGGCAGGAAGGACTACCCTGCTCTGCTCCCCCTGAATGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CAA 90 bp | TCCCCACCCGTCTCTACCTTGACCACAATGCCGGAGGGCACGTGTTaGAGCACTACACAATTGCTGGTCTTGTTGGTGGCCTGGCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: SPPVSTLTTMPEGTC*STTQLLVLLVAWPP Trigger: AGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAAACACGTGCCCTCCGGCATTGTGGTCAAGGTAGAGACGGGTGGGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CAA 90 bp | AAACCTGCTGTGGCCGCAGACCTGGGCTCCCCACCCGTCTCTACCTaGACCACAATGCCGGAGGGCACGTGTTTGAGCACTACACAATTG | + |
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Preference number: 6 (lower is better) Translates to: KPAVAADLGSPPVST*TTMPEGTCLSTTQL Trigger: CAATTGTGTAGTGCTCAAACACGTGCCCTCCGGCATTGTGGTCAAGGTAGAGACGGGTGGGGAGCCCAGGTCTGCGGCCACAGCAGGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111477.2 |
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| CDS CAA 90 bp | GATCTTGTTTGGTGGCACTTGACCACAATGCCGGAGGGCACGTGTTaGAGCACTACACAATTGCTGGTCTTGTTGGTGGCCTGGCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: DLVWWHLTTMPEGTC*STTQLLVLLVAWPP Trigger: AGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAAACACGTGCCCTCCGGCATTGTGGTCAAGTGCCACCAAACAAGATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077376.3 |
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| CDS CCA 72 bp | TACACAATTGCTGGTCTTGTTGGTGGCCTGGCCCCCTaGGCCATGTCCTTTCACGAACTGTTCTTCGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: YTIAGLVGGLAP*AMSFHELFFEL Trigger: GAGCTCGAAGAACAGTTCGTGAAAGGACATGGCCCAGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CCA 72 bp | TTGAGCACTACACAATTGCTGGTCTTGTTGGTGGCCTaGCCCCCTGGGCCATGTCCTTTCACGAACTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: LSTTQLLVLLVA*PPGPCPFTNCS Trigger: AGAACAGTTCGTGAAAGGACATGGCCCAGGGGGCCAGGCCACCAACAAGACCAGCAATTGTGTAGTGCTCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077376.3 ENSMUST00000111477.2 |
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| CDS CAA 90 bp | GAGGACTTTCCGAGCTATCTTCCTGTTTTGATCCACAGATCTTGTTaGGTGGCACTTGACCACAATGCCGGAGGGCACGTGTTTGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: EDFPSYLPVLIHRSC*VALDHNAGGHVFEH Trigger: GTGCTCAAACACGTGCCCTCCGGCATTGTGGTCAAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAGCTCGGAAAGTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077376.3 |
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| CDS CAA 90 bp | AACATCCACTTTCTCCTGGAGGACTTTCCGAGCTATCTTCCTGTTTaGATCCACAGATCTTGTTTGGTGGCACTTGACCACAATGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: NIHFLLEDFPSYLPV*IHRSCLVALDHNAG Trigger: TCCGGCATTGTGGTCAAGTGCCACCAAACAAGATCTGTGGATCAAAACAGGAAGATAGCTCGGAAAGTCCTCCAGGAGAAAGTGGATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077376.3 |
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