Pregenerated sensors for MTRF1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019774Ensembl transcript IDs: ENSMUST00000019908.9
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTaGGGGGCTACCCTTACAACATGCCTGACTCCATCACAGGGAGGG | + |
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Preference number: 1 (lower is better) Translates to: AQGTSCRVTQEHFHH*GATLTTCLTPSQGG Trigger: CCCTCCCTGTGATGGAGTCAGGCATGTTGTAAGGGTAGCCCCTCAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CCA 90 bp | TATATATGGAATGAACTACAATCCAGAAATGAAGGTTACACCTTCTaGTTTTTGAGGCAAGACAACATGCCTTTGGTCATGAAGCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: YIWNELQSRNEGYTF*FLRQDNMPLVMKLG Trigger: TCCCAGCTTCATGACCAAAGGCATGTTGTCTTGCCTCAAAAACCAGAAGGTGTAACCTTCATTTCTGGATTGTAGTTCATTCCATATATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CCA 90 bp | CTTATAGTGAATTTGTGTAGACACATCCTATTGGTTCTGTTTTTCTaGGGAACTGATATAGAAGCCCACCAACGCGTACTATTCAGTAAA | + |
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Preference number: 1 (lower is better) Translates to: LIVNLCRHILLVLFF*GTDIEAHQRVLFSK Trigger: TTTACTGAATAGTACGCGTTGGTGGGCTTCTATATCAGTTCCCCAGAAAAACAGAACCAATAGGATGTGTCTACACAAATTCACTATAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR GCA 90 bp | CAACATGCCTTTGGTCATGAAGCTGGGAAGATACCTCTAATCTGGGGCCACACCGGAAGTTTGGTTCTTTaGCTGCTTGTCCTTGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: QHAFGHEAGKIPLIWGHTGSLVL*LLVLAW Trigger: CCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCC...GGTGTGGCCCCAGATTAGAGGTATCTTCCCAGCTTCATGACCAAAGGCATGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR TCA 90 bp | GGCTACCCTTACAACATGCCTGACTCCATCACAGGGAGGGAGCACCGCGTAATGTTAACATTCCTCCAGTaGATCCTGGCTAAGTATTTG | + |
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Preference number: 2 (lower is better) Translates to: GYPYNMPDSITGREHRVMLTFLQ*ILAKYL Trigger: CAAATACTTAGCCAGGATTCACTGGAGGAATGTTAA...CATTACGCGGTGCTCCCTCCCTGTGATGGAGTCAGGCATGTTGTAAGGGTAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR GCA 90 bp | GGCTACCCTTACAACATGCCTGACTCCATCACAGGGAGGGAGCACCGCGTAATGTCCTGGCTAAGTATTTaGACACAATGGATTTGCACT | + |
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Preference number: 2 (lower is better) Translates to: GYPYNMPDSITGREHRVMSWLSI*TQWICT Trigger: AGTGCAAATCCATTGTGTGCAAATACTTAGCCAGGA...CATTACGCGGTGCTCCCTCCCTGTGATGGAGTCAGGCATGTTGTAAGGGTAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 90 bp | CCTGCTTGTCCTTGCCTGGCTATTACATCCATTCCTTCACTGGCATaGAAATCTACTTCTTCAGATTCCCACATATCCCGAAGACTAGCT | + |
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Preference number: 2 (lower is better) Translates to: PACPCLAITSIPSLA*KSTSSDSHISRRLA Trigger: AGCTAGTCTTCGGGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATAGCCAGGCAAGGACAAGCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR GCA 90 bp | TGGACACATGGTTCTCTATGTGGGACCATCCTTATAGTGAATTTGTGTAGACACGCTACCCTTACAACATaGCTGACTCCATCACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: WTHGSLCGTILIVNLCRHATLTT*LTPSQG Trigger: TCCCTGTGATGGAGTCAGGCATGTTGTAAGGGTAGC...GTGTCTACACAAATTCACTATAAGGATGGTCCCACATAGAGAACCATGTGTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 90 bp | CTAGAAGCCTATGTAAGGGCAATAGATGAAAGGAAGTTTGGTTCTTaGCCTGCTTGTCCTTGCCTGGCTATTACATCCATTCCTTCACTG | + |
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Preference number: 2 (lower is better) Translates to: LEAYVRAIDERKFGS*PACPCLAITSIPSL Trigger: CAGTGAAGGAATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTTTCATCTATTGCCCTTACATAGGCTTCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR TCA 90 bp | AAGGAAGTTTGGTTCTTTGCCTGCTTGTCCTTGCCTGGCTATTACATCCATTCCTCACTGGCATTTAAATaGGTGAAATATCAGTCATGC | + |
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Preference number: 2 (lower is better) Translates to: KEVWFFACLSLPGYYIHSSLAFK*VKYQSC Trigger: GCATGACTGATATTTCACTCATTTAAATGCCAGTGA...GGAATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR TCA 90 bp | ACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCACTGGAATAAAGGCCTaGGTAGAGAAAATCCAACCT | + |
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Preference number: 2 (lower is better) Translates to: TSIPSLALKSTSSDSHISTGIKA*VEKIQP Trigger: AGGTTGGATTTTCTCTACTCAGGCCTTTATTCCAGT...GGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CCA 90 bp | AAGGAAGTTTGGTTCTTTGCCTGCTTGTCCTTGCCTGGCTATTACATCCATTCCTTGTTAACATTATTTTaGGTCTCCTCAAGGTTTGGA | + |
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Preference number: 2 (lower is better) Translates to: KEVWFFACLSLPGYYIHSLLTLF*VSSRFG Trigger: TCCAAACCTTGAGGAGACCCAAAATAATGTTAACAA...GGAATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR TCA 90 bp | TATTACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATAACTCCCAAGTAGAGTaGACCATGAACTCTTCTTGT | + |
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Preference number: 2 (lower is better) Translates to: YYIHSFTGIEIYFFRFPHNSQVE*TMNSSC Trigger: ACAAGAAGAGTTCATGGTTCACTCTACTTGGGAGTT...ATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CCA 90 bp | TATTACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATTCCTCCAGTGAATCCTaGCTAAGTATTTGCACACAA | + |
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Preference number: 2 (lower is better) Translates to: YYIHSFTGIEIYFFRFPHSSSES*LSICTQ Trigger: TTGTGTGCAAATACTTAGCCAGGATTCACTGGAGGA...ATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CAA 90 bp | CAACATGCCTTTGGTCATGAAGCTGGGAAGATACCTCTAATCTGGGGCCACACCGGCTTGAGGTTCTGTTaGCAAGGCCCAAGGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: QHAFGHEAGKIPLIWGHTGLRFC*QGPRDQ Trigger: CTGGTCCCTTGGGCCTTGCAAACAGAACCTCAAGCC...GGTGTGGCCCCAGATTAGAGGTATCTTCCCAGCTTCATGACCAAAGGCATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR TCA 72 bp | ACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTaGGGGGCTACCCTTACAACATGCCTGACTCCATCA | + |
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Preference number: 3 (lower is better) Translates to: TSCRVTQEHFHH*GATLTTCLTPS Trigger: TGATGGAGTCAGGCATGTTGTAAGGGTAGCCCCTCAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR TCA 72 bp | TACTTCTTCAGATTCCCACATATCCCGAAGACTAGCTaGGGCACCAAGCCCTGTGGGACTGAGCAACTACTA | + |
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Preference number: 3 (lower is better) Translates to: YFFRFPHIPKTS*GTKPCGTEQLL Trigger: TAGTAGTTGCTCAGTCCCACAGGGCTTGGTGCCTCAGCTAGTCTTCGGGATATGTGGGAATCTGAAGAAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CAA 90 bp | GAAGGTTACACCTTCTGGTTTTTGAGGCAAGACAACATGCCTTTGGTCATGAAGTGGTTCTTTGCCTGCTaGTCCTTGCCTGGCTATTAC | + |
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Preference number: 3 (lower is better) Translates to: EGYTFWFLRQDNMPLVMKWFFAC*SLPGYY Trigger: GTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCA...CTTCATGACCAAAGGCATGTTGTCTTGCCTCAAAAACCAGAAGGTGTAACCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR TCA 72 bp | TCCAAAGAAATCTCCCTAGCAAACTCCCAAGTAGAGTaGACCATGAACTCTTCTTGTCTCCACCCAGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: SKEISLANSQVE*TMNSSCLHPAA Trigger: TGCAGCTGGGTGGAGACAAGAAGAGTTCATGGTTCACTCTACTTGGGAGTTTGCTAGGGAGATTTCTTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CAA 90 bp | GAAGGTTACACCTTCTGGTTTTTGAGGCAAGACAACATGCCTTTGGTCATGAAGGGAACATTTCCATCATaGAGGGGCTACCCTTACAAC | + |
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Preference number: 3 (lower is better) Translates to: EGYTFWFLRQDNMPLVMKGTFPS*RGYPYN Trigger: GTTGTAAGGGTAGCCCCTCAATGATGGAAATGTTCC...CTTCATGACCAAAGGCATGTTGTCTTGCCTCAAAAACCAGAAGGTGTAACCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR GCA 72 bp | GATGAAAGGAAGTTTGGTTCTTTGCCTGCTTGTCCTTaGCTGGCTATTACATCCATTCCTTCACTGGCATTG | + |
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Preference number: 3 (lower is better) Translates to: DERKFGSLPACP*LAITSIPSLAL Trigger: CAATGCCAGTGAAGGAATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTTTCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CCA 72 bp | CTATTCAGTAAAGCTCACATCTTGATAGGAGATGTTTaGCTACCAGCTCCCAAGGGCTTGAGGTTCTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: LFSKAHILIGDV*LPAPKGLRFCL Trigger: CAAACAGAACCTCAAGCCCTTGGGAGCTGGTAGCCAAACATCTCCTATCAAGATGTGAGCTTTACTGAATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR TCA 72 bp | CTTGCCTGGCTATTACATCCATTCCTTCACTGGCATTaGAATCTACTTCTTCAGATTCCCACATATCCCGAA | + |
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Preference number: 3 (lower is better) Translates to: LAWLLHPFLHWH*NLLLQIPTYPE Trigger: TTCGGGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATAGCCAGGCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CAA 90 bp | CATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCCGAAGTTTGTTAACATTATTTaGGGTCTCCTCAAGGTTTGG | + |
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Preference number: 3 (lower is better) Translates to: HSFTGIEIYFFRFPHIPKFVNII*GLLKVW Trigger: CCAAACCTTGAGGAGACCCAAAATAATGTTAACAAA...CTTCGGGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CCA 72 bp | AATGAACTACAATCCAGAAATGAAGGTTACACCTTCTaGTTTTTGAGGCAAGACAACATGCCTTTGGTCATG | + |
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Preference number: 3 (lower is better) Translates to: NELQSRNEGYTF*FLRQDNMPLVM Trigger: CATGACCAAAGGCATGTTGTCTTGCCTCAAAAACCAGAAGGTGTAACCTTCATTTCTGGATTGTAGTTCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR-3UTR CAA 90 bp | TATTACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATAGTAAAGCTCACATCTaGATAGGAGATGTTTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: YYIHSFTGIEIYFFRFPHSKAHI*IGDVWL Trigger: TAGCCAAACATCTCCTATCAAGATGTGAGCTTTACT...ATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR TCA 72 bp | AATTGTCCAAGAAACTGTTACTTAACATTCCTCCAGTaGATCCTGGCTAAGTATTTGCACACAATGGATTTG | + |
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Preference number: 3 (lower is better) Translates to: NCPRNCYLTFLQ*ILAKYLHTMDL Trigger: CAAATCCATTGTGTGCAAATACTTAGCCAGGATTCACTGGAGGAATGTTAAGTAACAGTTTCTTGGACAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | TTGCAAGGCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTGGTGGTGTTTACGTGCTaGCCGCCAGCCCCACTCGCT | + |
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Preference number: 4 (lower is better) Translates to: LQGPRDQLQGNPGTFPSLVVFTC*PPAPLA Trigger: AGCGAGTGGGGCTGGCGGTCAGCACGTAAACACCAC...CAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGCCTTGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | GCTACCAGCTCCCAAGGGCTTGAGGTTCTGTTTGCAAGGCCCAAGGGACCAGCTAGGCTGGGGCAGAATTaGCACTGTCATGGTGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: ATSSQGLEVLFARPKGPARLGQN*HCHGAR Trigger: ACGAGCACCATGACAGTGGCAATTCTGCCCCAGCCT...AGCTGGTCCCTTGGGCCTTGCAAACAGAACCTCAAGCCCTTGGGAGCTGGTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | TTGCAAGGCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTGTGGTGCTCGTGTGGATaGGGCCCTGCTTCTCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: LQGPRDQLQGNPGTFPSLWCSCG*GPASPS Trigger: AGACGGAGAAGCAGGGCCGCATCCACACGAGCACCA...CAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGCCTTGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | CAACATGCCTTTGGTCATGAAGCTGGGAAGATACCTCTAATCTGGGGCCACACCAAAAGCATGGCTTCCTaGCCACCCACACCCGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: QHAFGHEAGKIPLIWGHTKSMAS*PPTPAV Trigger: GACTGCGGGTGTGGGTGGTCAGGAAGCCATGCTTTT...GGTGTGGCCCCAGATTAGAGGTATCTTCCCAGCTTCATGACCAAAGGCATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 72 bp | GACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATaGAGGGGCTACCCTTACAACATGCCTGACTCCATC | + |
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Preference number: 4 (lower is better) Translates to: DQLQGNPGTFPS*RGYPYNMPDSI Trigger: GATGGAGTCAGGCATGTTGTAAGGGTAGCCCCTCAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | TTGCAAGGCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTGACCCTCTGGACTCTGTaGACTCCTCCTTCAAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LQGPRDQLQGNPGTFPSLTLWTL*TPPSNF Trigger: GAAGTTTGAAGGAGGAGTGCACAGAGTCCAGAGGGT...CAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGCCTTGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | TTGCAAGGCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTGTCTTCATTTTCATCGTaGAGCAATGACTCCGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LQGPRDQLQGNPGTFPSLSSFSS*SNDSVS Trigger: GGACACGGAGTCATTGCTGCACGATGAAAATGAAGA...CAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGCCTTGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | ACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCGTGTGGATGCGGCCCTaGTTCTCCGTCTTTGGCACC | + |
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Preference number: 4 (lower is better) Translates to: TSIPSLALKSTSSDSHISVWMRP*FSVFGT Trigger: GGTGCCAAAGACGGAGAAGCAGGGCCGCATCCACAC...GGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | AAGGAAGTTTGGTTCTTTGCCTGCTTGTCCTTGCCTGGCTATTACATCCATTCCTCCCTGTTCTTCAGCTaGGATCTCTCTTGCTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: KEVWFFACLSLPGYYIHSSLFFS*DLSCWH Trigger: ATGCCAGCAAGAGAGATCTCAGCTGAAGAACAGGGA...GGAATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | ACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCTTGCCACTGTCATGGTaGTCGTGTGGATGCGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: TSIPSLALKSTSSDSHISLPLSW*SCGCGP Trigger: AGGGCCGCATCCACACGAGCACCATGACAGTGGCAA...GGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | CAACATGCCTTTGGTCATGAAGCTGGGAAGATACCTCTAATCTGGGGCCACACCGTTTCTTCCTCCAGATaGATGCTATATAGCCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: QHAFGHEAGKIPLIWGHTVSSSR*MLYSLA Trigger: TGCAAGGCTATATAGCATGCATCTGGAGGAAGAAAC...GGTGTGGCCCCAGATTAGAGGTATCTTCCCAGCTTCATGACCAAAGGCATGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | TTGCAAGGCCCAAGGGACCAGCTGCAGGGTAACCCAGGAACATTTCCATCATTGAACAGTGAGATAATCTaGTGCTTCAGCTCAGTTATT | + |
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Preference number: 4 (lower is better) Translates to: LQGPRDQLQGNPGTFPSLNSEII*CFSSVI Trigger: AATAACTGAGCTGAAGCATCAGATTATCTCACTGTT...CAATGATGGAAATGTTCCTGGGTTACCCTGCAGCTGGTCCCTTGGGCCTTGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | GAAGGTTACACCTTCTGGTTTTTGAGGCAAGACAACATGCCTTTGGTCATGAAGCGAAGGAACCAACAGTaGGATAATCTGATGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: EGYTFWFLRQDNMPLVMKRRNQQ*DNLMLQ Trigger: CTGAAGCATCAGATTATCTCACTGTTGGTTCCTTCG...CTTCATGACCAAAGGCATGTTGTCTTGCCTCAAAAACCAGAAGGTGTAACCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 72 bp | CCTTGCCTGGCTATTACATCCATTCCTTCACTGGCATaGAAATCTACTTCTTCAGATTCCCACATATCCCGA | + |
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Preference number: 4 (lower is better) Translates to: PCLAITSIPSLA*KSTSSDSHISR Trigger: TCGGGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATAGCCAGGCAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | TGGACACATGGTTCTCTATGTGGGACCATCCTTATAGTGAATTTGTGTAGACACCAGTCCTTCAGTGACTaGATCATGTCATCCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: WTHGSLCGTILIVNLCRHQSFSD*IMSSRR Trigger: TCTTCTGGATGACATGATTCAGTCACTGAAGGACTG...GTGTCTACACAAATTCACTATAAGGATGGTCCCACATAGAGAACCATGTGTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR TCA 90 bp | ACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCCGAACAGTCCTTCAGTaGCTGAATCATGTCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: TSIPSLALKSTSSDSHISRTVLQ*LNHVIQ Trigger: CTGGATGACATGATTCAGTCACTGAAGGACTGTTCG...GGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 72 bp | TATGTAAGGGCAATAGATGAAAGGAAGTTTGGTTCTTaGCCTGCTTGTCCTTGCCTGGCTATTACATCCATT | + |
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Preference number: 4 (lower is better) Translates to: YVRAIDERKFGS*PACPCLAITSI Trigger: AATGGATGTAATAGCCAGGCAAGGACAAGCAGGCAAAGAACCAAACTTCCTTTCATCTATTGCCCTTACATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| 3UTR CAA 72 bp | CATGGTTCTCTATGTGGGACCATCCTTATAGTGAATTaGTGTAGACACATCCTATTGGTTCTGTTTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HGSLCGTILIVN*CRHILLVLFFW Trigger: CCAGAAAAACAGAACCAATAGGATGTGTCTACACAAATTCACTATAAGGATGGTCCCACATAGAGAACCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR GCA 90 bp | TATTACATCCATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATTTAAATGCAGCGTACTaGTGGTACATGTCAAACATC | + |
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Preference number: 4 (lower is better) Translates to: YYIHSFTGIEIYFFRFPHLNAAY*WYMSNI Trigger: GATGTTTGACATGTACCAGCAGTACGCTGCATTTAA...ATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATGGATGTAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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| CDS-3UTR CAA 90 bp | CATTCCTTCACTGGCATTGAAATCTACTTCTTCAGATTCCCACATATCCCGAAGCCTGCTTCTCCGTCTTaGGCACCCTCTGGACTCTGT | + |
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Preference number: 5 (lower is better) Translates to: HSFTGIEIYFFRFPHIPKPASPS*APSGLC Trigger: ACAGAGTCCAGAGGGTGCCAAAGACGGAGAAGCAGG...CTTCGGGATATGTGGGAATCTGAAGAAGTAGATTTCAATGCCAGTGAAGGAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019908.9 |
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