Pregenerated sensors for MTRF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022022

Ensembl transcript IDs: ENSMUST00000022600.4

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGAATGTGGACAAGCCTCACGGCACTGTCGGTGGTGTTAACATGCTaGCCCCCTGCTCCTCTGGCTCGAAATGTGTCTACTCGCAGATCC	+
Preference number: 5 (lower is better) Translates to: GMWTSLTALSVVLTC*PPAPLARNVSTRRS Trigger: GGATCTGCGAGTAGACACATTTCGAGCCAGAGGAGCAGGGGGGCAGCATGTTAACACCACCGACAGTGCCGTGAGGCTTGTCCACATTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 90 bp	CATCTGGCTGTGGAAGGACAATCACTGACATTGTTCCCGTGTGAATaGGCTGCATCCGTGATGACAGGCCCACCTCCGGGATGCGCTGAA	+
Preference number: 5 (lower is better) Translates to: HLAVEGQSLTLFPCE*AASVMTGPPPGCAE Trigger: TTCAGCGCATCCCGGAGGTGGGCCTGTCATCACGGATGCAGCGCATTCACACGGGAACAATGTCAGTGATTGTCCTTCCACAGCCAGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 90 bp	CCGTGTGAATGCGCTGCATCCGTGATGACAGGCCCACCTCCGGGATaGGCTGAACTCGATGGATTCCGCCTTCATACTTCAAATGCTTAT	+
Preference number: 5 (lower is better) Translates to: PCECAASVMTGPPPG*AELDGFRLHTSNAY Trigger: ATAAGCATTTGAAGTATGAAGGCGGAATCCATCGAGTTCAGCGCATCCCGGAGGTGGGCCTGTCATCACGGATGCAGCGCATTCACACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 90 bp	CTAAAATTCCACGGCCTTGTATCAAGGCTTATCTGTCGGAACTGCTaGCAAGAAAGGAAGACATGTCTCTGGGGGCACGCACGGAGAAAT	+
Preference number: 5 (lower is better) Translates to: LKFHGLVSRLICRNC*QERKTCLWGHARRN Trigger: ATTTCTCCGTGCGTGCCCCCAGAGACATGTCTTCCTTTCTTGTCAGCAGTTCCGACAGATAAGCCTTGATACAAGGCCGTGGAATTTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 90 bp	CTTCCATATACTTCTGTAGGGCTTTGTGTTTCCAAAGCTTCCTTGTaGCTTGATGACAGCAGCCCCTGGACCAACTCTTGTTTAAGAGCT	+
Preference number: 5 (lower is better) Translates to: LPYTSVGLCVSKASL*LDDSSPWTNSCLRA Trigger: AGCTCTTAAACAAGAGTTGGTCCAGGGGCTGCTGTCATCAAGGCACAAGGAAGCTTTGGAAACACAAAGCCCTACAGAAGTATATGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 90 bp	TCTGGCTCTCAACACACGCAAAGCTATTTCTTTATTTTTCAGCTGTaGTCGTTCTTGTTGGCACTCTACTACCAGTCCCGTGGGAATGTG	+
Preference number: 5 (lower is better) Translates to: SGSQHTQSYFFIFQL*SFLLALYYQSRGNV Trigger: CACATTCCCACGGGACTGGTAGTAGAGTGCCAACAAGAACGATCACAGCTGAAAAATAAAGAAATAGCTTTGCGTGTGTTGAGAGCCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 90 bp	CTTTGTGTTTCCAAAGCTTCCTTGTGCCTTGATGACAGCAGCCCCTaGACCAACTCTTGTTTAAGAGCTGATAGAGAACATGAGTCTTCT	+
Preference number: 5 (lower is better) Translates to: LCVSKASLCLDDSSP*TNSCLRADREHESS Trigger: AGAAGACTCATGTTCTCTATCAGCTCTTAAACAAGAGTTGGTCCAGGGGCTGCTGTCATCAAGGCACAAGGAAGCTTTGGAAACACAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 90 bp	GGCACTAAACGCTCCAAAAGCTCACTATACAGTCTGTGGATCTTCTaGTCAATGATTTGCCTTTCTTCTGACACAAGTTCTTGCAACTGC	+
Preference number: 5 (lower is better) Translates to: GTKRSKSSLYSLWIF*SMICLSSDTSSCNC Trigger: GCAGTTGCAAGAACTTGTGTCAGAAGAAAGGCAAATCATTGATCAGAAGATCCACAGACTGTATAGTGAGCTTTTGGAGCGTTTAGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 90 bp	TCTGCTGCTGACACCTGTCTTTCTCGATTATCTGTTGGTAGAGTCTaGCTCTCAACACACGCAAAGCTATTTCTTTATTTTTCAGCTGTG	+
Preference number: 5 (lower is better) Translates to: SAADTCLSRLSVGRV*LSTHAKLFLYFSAV Trigger: CACAGCTGAAAAATAAAGAAATAGCTTTGCGTGTGTTGAGAGCCAGACTCTACCAACAGATAATCGAGAAAGACAGGTGTCAGCAGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 90 bp	CCACGTAAAAATTCCTTAATGTCACGAACTTCATACGCTATCCTGTaGTCAGTGACTCTATCCTGGGTGAAATTATATGTCCGAATTCTC	+
Preference number: 5 (lower is better) Translates to: PRKNSLMSRTSYAIL*SVTLSWVKLYVRIL Trigger: GAGAATTCGGACATATAATTTCACCCAGGATAGAGTCACTGACCACAGGATAGCGTATGAAGTTCGTGACATTAAGGAATTTTTACGTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 90 bp	AACGCTCCAAAAGCTCACTATACAGTCTGTGGATCTTCTGATCAATaGTTTGCCTTTCTTCTGACACAAGTTCTTGCAACTGCTTTTCAT	+
Preference number: 5 (lower is better) Translates to: NAPKAHYTVCGSSDQ*FAFLLTQVLATAFH Trigger: ATGAAAAGCAGTTGCAAGAACTTGTGTCAGAAGAAAGGCAAATCATTGATCAGAAGATCCACAGACTGTATAGTGAGCTTTTGGAGCGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 90 bp	CATCTTGTTTATTTAGACTTTTACACAATGACTCTAATTCTTCAATaGCTTGTTCGGCCTCCTGAATTTCTTGGTAAACAGCCGCAAGTG	+
Preference number: 5 (lower is better) Translates to: HLVYLDFYTMTLILQ*LVRPPEFLGKQPQV Trigger: CACTTGCGGCTGTTTACCAAGAAATTCAGGAGGCCGAACAAGCCATTGAAGAATTAGAGTCATTGTGTAAAAGTCTAAATAAACAAGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 72 bp	TGCGCTGCATCCGTGATGACAGGCCCACCTCCGGGATaGGCTGAACTCGATGGATTCCGCCTTCATACTTCA	+
Preference number: 6 (lower is better) Translates to: CAASVMTGPPPG*AELDGFRLHTS Trigger: TGAAGTATGAAGGCGGAATCCATCGAGTTCAGCGCATCCCGGAGGTGGGCCTGTCATCACGGATGCAGCGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 72 bp	GGCTGTGGAAGGACAATCACTGACATTGTTCCCGTGTaGATGCGCTGCATCCGTGATGACAGGCCCACCTCC	+
Preference number: 6 (lower is better) Translates to: GCGRTITDIVPV*MRCIRDDRPTS Trigger: GGAGGTGGGCCTGTCATCACGGATGCAGCGCATTCACACGGGAACAATGTCAGTGATTGTCCTTCCACAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 72 bp	GTGGAAGGACAATCACTGACATTGTTCCCGTGTGAATaGGCTGCATCCGTGATGACAGGCCCACCTCCGGGA	+
Preference number: 6 (lower is better) Translates to: VEGQSLTLFPCE*AASVMTGPPPG Trigger: TCCCGGAGGTGGGCCTGTCATCACGGATGCAGCGCATTCACACGGGAACAATGTCAGTGATTGTCCTTCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 72 bp	ACAAGCCTCACGGCACTGTCGGTGGTGTTAACATGCTaGCCCCCTGCTCCTCTGGCTCGAAATGTGTCTACT	+
Preference number: 6 (lower is better) Translates to: TSLTALSVVLTC*PPAPLARNVST Trigger: AGTAGACACATTTCGAGCCAGAGGAGCAGGGGGGCAGCATGTTAACACCACCGACAGTGCCGTGAGGCTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 72 bp	TGCATCCGTGATGACAGGCCCACCTCCGGGATGCGCTaGACTCGATGGATTCCGCCTTCATACTTCAAATGC	+
Preference number: 6 (lower is better) Translates to: CIRDDRPTSGMR*TRWIPPSYFKC Trigger: GCATTTGAAGTATGAAGGCGGAATCCATCGAGTTCAGCGCATCCCGGAGGTGGGCCTGTCATCACGGATGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 72 bp	CACGGCCTTGTATCAAGGCTTATCTGTCGGAACTGCTaGCAAGAAAGGAAGACATGTCTCTGGGGGCACGCA	+
Preference number: 6 (lower is better) Translates to: HGLVSRLICRNC*QERKTCLWGHA Trigger: TGCGTGCCCCCAGAGACATGTCTTCCTTTCTTGTCAGCAGTTCCGACAGATAAGCCTTGATACAAGGCCGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 72 bp	GCTCCTCTGGCTCGAAATGTGTCTACTCGCAGATCCTaGGGATCCACTTTCACATCTACCTCATCTGGCTGT	+
Preference number: 6 (lower is better) Translates to: APLARNVSTRRS*GSTFTSTSSGC Trigger: ACAGCCAGATGAGGTAGATGTGAAAGTGGATCCCAAGGATCTGCGAGTAGACACATTTCGAGCCAGAGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS GCA 72 bp	ACTTCTGTAGGGCTTTGTGTTTCCAAAGCTTCCTTGTaGCTTGATGACAGCAGCCCCTGGACCAACTCTTGT	+
Preference number: 6 (lower is better) Translates to: TSVGLCVSKASL*LDDSSPWTNSC Trigger: ACAAGAGTTGGTCCAGGGGCTGCTGTCATCAAGGCACAAGGAAGCTTTGGAAACACAAAGCCCTACAGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	CGGTCTCCTTCATTCTCAGAGATACCCTGCAGACACTaGTCAAGGGTTTGGTACTCTTTATTCAGGTCTTCC	+
Preference number: 6 (lower is better) Translates to: RSPSFSEIPCRH*SRVWYSLFRSS Trigger: GGAAGACCTGAATAAAGAGTACCAAACCCTTGACCAGTGTCTGCAGGGTATCTCTGAGAATGAAGGAGACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 72 bp	TATACTTCTGTAGGGCTTTGTGTTTCCAAAGCTTCCTaGTGCCTTGATGACAGCAGCCCCTGGACCAACTCT	+
Preference number: 6 (lower is better) Translates to: YTSVGLCVSKAS*CLDDSSPWTNS Trigger: AGAGTTGGTCCAGGGGCTGCTGTCATCAAGGCACAAGGAAGCTTTGGAAACACAAAGCCCTACAGAAGTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	TCCAAAGCTTCCTTGTGCCTTGATGACAGCAGCCCCTaGACCAACTCTTGTTTAAGAGCTGATAGAGAACAT	+
Preference number: 6 (lower is better) Translates to: SKASLCLDDSSP*TNSCLRADREH Trigger: ATGTTCTCTATCAGCTCTTAAACAAGAGTTGGTCCAGGGGCTGCTGTCATCAAGGCACAAGGAAGCTTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 72 bp	ATTCTGCTGCTGACACCTGTCTTTCTCGATTATCTGTaGGTAGAGTCTGGCTCTCAACACACGCAAAGCTAT	+
Preference number: 6 (lower is better) Translates to: ILLLTPVFLDYL*VESGSQHTQSY Trigger: ATAGCTTTGCGTGTGTTGAGAGCCAGACTCTACCAACAGATAATCGAGAAAGACAGGTGTCAGCAGCAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	TTCTCAGAGATACCCTGCAGACACTGGTCAAGGGTTTaGTACTCTTTATTCAGGTCTTCCATATACTTCTGT	+
Preference number: 6 (lower is better) Translates to: FSEIPCRHWSRV*YSLFRSSIYFC Trigger: ACAGAAGTATATGGAAGACCTGAATAAAGAGTACCAAACCCTTGACCAGTGTCTGCAGGGTATCTCTGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 72 bp	ATTCTCAGAGATACCCTGCAGACACTGGTCAAGGGTTaGGTACTCTTTATTCAGGTCTTCCATATACTTCTG	+
Preference number: 6 (lower is better) Translates to: ILRDTLQTLVKG*VLFIQVFHILL Trigger: CAGAAGTATATGGAAGACCTGAATAAAGAGTACCAAACCCTTGACCAGTGTCTGCAGGGTATCTCTGAGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 72 bp	CGCTCCAAAAGCTCACTATACAGTCTGTGGATCTTCTaGTCAATGATTTGCCTTTCTTCTGACACAAGTTCT	+
Preference number: 6 (lower is better) Translates to: RSKSSLYSLWIF*SMICLSSDTSS Trigger: AGAACTTGTGTCAGAAGAAAGGCAAATCATTGATCAGAAGATCCACAGACTGTATAGTGAGCTTTTGGAGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	TTCTGGTACATATCAAATATTTCCCGGGTAAACTGTTaGCAGATATCACCTCCAGTAGTTCTTCCAGATGTC	+
Preference number: 6 (lower is better) Translates to: FWYISNISRVNC*QISPPVVLPDV Trigger: GACATCTGGAAGAACTACTGGAGGTGATATCTGCCAACAGTTTACCCGGGAAATATTTGATATGTACCAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 90 bp	TTTTCTAGCATTCTGCTGCTGACACCTGTCTTTCTCGATTATCTGTaGGTAGAGTCTGGCTCTCAACACACGCAAAGCTATTTCTTTATT	+
Preference number: 6 (lower is better) Translates to: FSSILLLTPVFLDYL*VESGSQHTQSYFFI Trigger: AATAAAGAAATAGCTTTGCGTGTGTTGAGAGCCAGACTCTACCAACAGATAATCGAGAAAGACAGGTGTCAGCAGCAGAATGCTAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	GACACCTGTCTTTCTCGATTATCTGTTGGTAGAGTCTaGCTCTCAACACACGCAAAGCTATTTCTTTATTTT	+
Preference number: 6 (lower is better) Translates to: DTCLSRLSVGRV*LSTHAKLFLYF Trigger: AAAATAAAGAAATAGCTTTGCGTGTGTTGAGAGCCAGACTCTACCAACAGATAATCGAGAAAGACAGGTGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	AATTCCTTAATGTCACGAACTTCATACGCTATCCTGTaGTCAGTGACTCTATCCTGGGTGAAATTATATGTC	+
Preference number: 6 (lower is better) Translates to: NSLMSRTSYAIL*SVTLSWVKLYV Trigger: GACATATAATTTCACCCAGGATAGAGTCACTGACCACAGGATAGCGTATGAAGTTCGTGACATTAAGGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CAA 72 bp	ATTCTGGTACATATCAAATATTTCCCGGGTAAACTGTaGGCAGATATCACCTCCAGTAGTTCTTCCAGATGT	+
Preference number: 6 (lower is better) Translates to: ILVHIKYFPGKL*ADITSSSSSRC Trigger: ACATCTGGAAGAACTACTGGAGGTGATATCTGCCAACAGTTTACCCGGGAAATATTTGATATGTACCAGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS TCA 72 bp	AAAGCTCACTATACAGTCTGTGGATCTTCTGATCAATaGTTTGCCTTTCTTCTGACACAAGTTCTTGCAACT	+
Preference number: 6 (lower is better) Translates to: KAHYTVCGSSDQ*FAFLLTQVLAT Trigger: AGTTGCAAGAACTTGTGTCAGAAGAAAGGCAAATCATTGATCAGAAGATCCACAGACTGTATAGTGAGCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022600.4
CDS CCA 72 bp	TATTTAGACTTTTACACAATGACTCTAATTCTTCAATaGCTTGTTCGGCCTCCTGAATTTCTTGGTAAACAG	+
Preference number: 6 (lower is better) Translates to: YLDFYTMTLILQ*LVRPPEFLGKQ Trigger: CTGTTTACCAAGAAATTCAGGAGGCCGAACAAGCCATTGAAGAATTAGAGTCATTGTGTAAAAGTCTAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022600.4

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