Pregenerated sensors for MTRES1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019797Ensembl transcript IDs: ENSMUST00000147196.3
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTATGCTCCCCCACCCCCTGACAATTAGGAGGCAGTCTGTGGGAGAAGTGATGGGCCCGTCTTCAGGATaGCGTCGTACCGGAAAGACT | + |
|
Preference number: 4 (lower is better) Translates to: FMLPHPLTIRRQSVGEVMGPSSG*RRTGKT Trigger: AGTCTTTCCGGTACGACGTCATCCTGAAGACGGGCC...CATCACTTCTCCCACAGACTGCCTCCTAATTGTCAGGGGGTGGGGGAGCATAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000147196.3 |
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| CDS-3UTR GCA 90 bp | TTTATGCTCCCCCACCCCCTGACAATTAGGAGGCAGTCTGTGGGAGAAGTGATGTCGTCTGCCTCTTTTTaGAGGGTCTTTTTCGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: FMLPHPLTIRRQSVGEVMSSASF*RVFFVD Trigger: ATCTACGAAAAAGACCCTGCAAAAAGAGGCAGACGA...CATCACTTCTCCCACAGACTGCCTCCTAATTGTCAGGGGGTGGGGGAGCATAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000147196.3 |
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| CDS-3UTR CAA 90 bp | TTTATGCTCCCCCACCCCCTGACAATTAGGAGGCAGTCTGTGGGAGAAGTGATGAATGCATCTTCTACTTaGTTTCTCCCCACGTCAAGG | + |
|
Preference number: 5 (lower is better) Translates to: FMLPHPLTIRRQSVGEVMNASST*FLPTSR Trigger: CCTTGACGTGGGGAGAAACAAAGTAGAAGATGCATT...CATCACTTCTCCCACAGACTGCCTCCTAATTGTCAGGGGGTGGGGGAGCATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000147196.3 |
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| CDS-3UTR CAA 90 bp | TTTATGCTCCCCCACCCCCTGACAATTAGGAGGCAGTCTGTGGGAGAAGTGATGTCTGTTCCTGTCTCTTaGTTCTCTCCAGTGATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: FMLPHPLTIRRQSVGEVMSVPVS*FSPVMR Trigger: TCTCATCACTGGAGAGAACAAAGAGACAGGAACAGA...CATCACTTCTCCCACAGACTGCCTCCTAATTGTCAGGGGGTGGGGGAGCATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000147196.3 |
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