RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021311

Ensembl transcript IDs: ENSMUST00000099856.6, ENSMUST00000221290.2

Found 317 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCCCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTaGATCGCAGTCAACCAGCCTCTCCCAGCAGGGCAGAGGGCAGGG +
Preference number: 1 (lower is better)
Translates to: VPGKVLLFQNPRGLL*IAVNQPLPAGQRAG
Trigger: CCCTGCCCTCTGCCCTGCTGGGAGAGGCTGGTTGACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp CTGGGACCATCCAGCATGCCGTCGTCCATGTTGATATCGAGCACCTaGGCTCCCATTTCCACCTGTGCTTTGGCAATGCTCAGGGCTTCT +
Preference number: 1 (lower is better)
Translates to: LGPSSMPSSMLISST*APISTCALAMLRAS
Trigger: AGAAGCCCTGAGCATTGCCAAAGCACAGGTGGAAATGGGAGCTCAGGTGCTCGATATCAACATGGACGACGGCATGCTGGATGGTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR GCA 90 bp TGCACAGGGGCACCTTGGCAATGTCAGGCTCAGAAGCAATGGAGTTaGAAAATCTGGTCATTGCACTGGGACCATCCAGCATGCCGTCGT +
Preference number: 1 (lower is better)
Translates to: CTGAPWQCQAQKQWS*KIWSLHWDHPACRR
Trigger: ACGACGGCATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGCCCCTGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 90 bp ATCTGGTCATTGCACTGGGACCATCCAGCATGCCGTCGTCCATGTTaGTATCGAGCACCTGAGCTCCCATTTCCACCTGTGCTTTGGCAA +
Preference number: 1 (lower is better)
Translates to: IWSLHWDHPACRRPC*YRAPELPFPPVLWQ
Trigger: TTGCCAAAGCACAGGTGGAAATGGGAGCTCAGGTGCTCGATATCAACATGGACGACGGCATGCTGGATGGTCCCAGTGCAATGACCAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 90 bp CCCTCCCCCTCCTTGAGGCTGATGCTGTTGACTATGCACTTCCCTTaGCAGCACTTCAACCCAGCTTCAATCACGGCAAAGTTAGAAGAG +
Preference number: 1 (lower is better)
Translates to: PSPSLRLMLLTMHFP*QHFNPASITAKLEE
Trigger: CTCTTCTAACTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAAGGAGGGGGAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 90 bp GGCGGGGAATGCAGCCCTAATGAATATGCAAGCCTCAAGTGTGAATaGGTTCCTGTCAGGATCTCAGAGGCCAACTGTGAGGGAACATGC +
Preference number: 1 (lower is better)
Translates to: GGECSPNEYASLKCE*VPVRISEANCEGTC
Trigger: GCATGTTCCCTCACAGTTGGCCTCTGAGATCCTGACAGGAACTCATTCACACTTGAGGCTTGCATATTCATTAGGGCTGCATTCCCCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 90 bp TCACCAAGCCATCCACAGCAAAGTCCTTCAGGTGCGTGGCCATCGTaGATGGTGTTTCATCATAGTCGCCAAAAGTGTTGGGAAGACCTG +
Preference number: 1 (lower is better)
Translates to: SPSHPQQSPSGAWPS*MVFHHSRQKCWEDL
Trigger: CAGGTCTTCCCAACACTTTTGGCGACTATGATGAAACACCATCCACGATGGCCACGCACCTGAAGGACTTTGCTGTGGATGGCTTGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 90 bp AGTCAATGCACAGGGGCACCTTGGCAATGTCAGGCTCAGAAGCAATaGAGTTGCAAAATCTGGTCATTGCACTGGGACCATCCAGCATGC +
Preference number: 1 (lower is better)
Translates to: SQCTGAPWQCQAQKQ*SCKIWSLHWDHPAC
Trigger: GCATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGCCCCTGTGCATTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR GCA 90 bp GGCAATGTCAGGCTCAGAAGCAATGGAGTTGCAAAATCTGGTCATTaGACTGGGACCATCCAGCATGCCGTCGTCCATGTTGATATCGAG +
Preference number: 1 (lower is better)
Translates to: GNVRLRSNGVAKSGH*TGTIQHAVVHVDIE
Trigger: CTCGATATCAACATGGACGACGGCATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 90 bp TTTTCTTCTACCATGTGGGTCCCAGAGCACAAACCAGGTGAGGTTTaGCAGCCTGTGCATTTACTCACTAAGCCTTCCTGCTGGTCCTGT +
Preference number: 1 (lower is better)
Translates to: FSSTMWVPEHKPGEV*QPVHLLTKPSCWSC
Trigger: ACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCAAACCTCACCTGGTTTGTGCTCTGGGACCCACATGGTAGAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 90 bp CAAGCCATCCACAGCAAAGTCCTTCAGGTGCGTGGCCATCGTGGATaGTGTTTCATCATAGTCGCCAAAAGTGTTGGGAAGACCTGCATT +
Preference number: 1 (lower is better)
Translates to: QAIHSKVLQVRGHRG*CFIIVAKSVGKTCI
Trigger: AATGCAGGTCTTCCCAACACTTTTGGCGACTATGATGAAACACCATCCACGATGGCCACGCACCTGAAGGACTTTGCTGTGGATGGCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 90 bp AAGATGTCTTCCGCTTGCCCCAATCATGAGGGCCCAGGAACACCATaGGCCTTGGCACTTTGTTGCTTCTCATTTAAGGTCCCTGGAAAA +
Preference number: 1 (lower is better)
Translates to: KMSSACPNHEGPGTP*ALALCCFSFKVPGK
Trigger: TTTTCCAGGGACCTTAAATGAGAAGCAACAAAGTGCCAAGGCTCATGGTGTTCCTGGGCCCTCATGATTGGGGCAAGCGGAAGACATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 90 bp CCATGTGGGTCCCAGAGCACAAACCAGGTGAGGTTTGGCAGCCTGTaGATTTACTCACTAAGCCTTCCTGCTGGTCCTGTTTTTGTTTTT +
Preference number: 1 (lower is better)
Translates to: PCGSQSTNQVRFGSL*IYSLSLPAGPVFVF
Trigger: AAAAACAAAAACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCAAACCTCACCTGGTTTGTGCTCTGGGACCCACATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 90 bp GGTGAGGTTTGGCAGCCTGTGCATTTACTCACTAAGCCTTCCTGCTaGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGC +
Preference number: 1 (lower is better)
Translates to: GEVWQPVHLLTKPSC*SCFCFWRGYGTQDG
Trigger: GCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCAAACCTCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 90 bp GAGGCTATGGAACTCAGGATGGCCTGTTACTCAAGCAAATCTTCCTaGCTCAACTTCCCAAATCCTGTGATTACAGACAAGGGTAGCACT +
Preference number: 1 (lower is better)
Translates to: EAMELRMACYSSKSS*LNFPNPVITDKGST
Trigger: AGTGCTACCCTTGTCTGTAATCACAGGATTTGGGAAGTTGAGGCAGGAAGATTTGCTTGAGTAACAGGCCATCCTGAGTTCCATAGCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 90 bp CCTTTAATGCTTCTATTTACTGTCCCTCATCTGTTCCTTTCCTGCTaGTCCATCTCTGTTCTTCAGGTCCTAAACCGAGGCAACCAGGAC +
Preference number: 1 (lower is better)
Translates to: PLMLLFTVPHLFLSC*SISVLQVLNRGNQD
Trigger: GTCCTGGTTGCCTCGGTTTAGGACCTGAAGAACAGAGATGGAGCAGCAGGAAAGGAACAGATGAGGGACAGTAAATAGAAGCATTAAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp GCCTCTGCCACAGAGTTCTACATCCGCTTAGTTACACCTCAGAAGTaGGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCC +
Preference number: 1 (lower is better)
Translates to: ASATEFYIRLVTPQK*DVTGEKKGILFSLS
Trigger: GGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACTTCTGAGGTGTAACTAAGCGGATGTAGAACTCTGTGGCAGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 90 bp GTGCATTTACTCACTAAGCCTTCCTGCTGGTCCTGTTTTTGTTTTTaGAGAGGCTATGGAACTCAGGATGGCCTGTTACTCAAGCAAATC +
Preference number: 1 (lower is better)
Translates to: VHLLTKPSCWSCFCF*RGYGTQDGLLLKQI
Trigger: GATTTGCTTGAGTAACAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp CCTGTTACTCAAGCAAATCTTCCTGCCTCAACTTCCCAAATCCTGTaGTTACAGACAAGGGTAGCACTTCTGGCTACGTCCAATTCTAAA +
Preference number: 1 (lower is better)
Translates to: PVTQANLPASTSQIL*LQTRVALLATSNSK
Trigger: TTTAGAATTGGACGTAGCCAGAAGTGCTACCCTTGTCTGTAATCACAGGATTTGGGAAGTTGAGGCAGGAAGATTTGCTTGAGTAACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp ATTAAGGATGGAGGGTCCTGGAGTATGATAGATGAGATCAACCTCTaGAACAACAGGCTGGGAGAGCAACTAATACAGGATGTAAGACTT +
Preference number: 1 (lower is better)
Translates to: IKDGGSWSMIDEINL*NNRLGEQLIQDVRL
Trigger: AAGTCTTACATCCTGTATTAGTTGCTCTCCCAGCCTGTTGTTTCAGAGGTTGATCTCATCTATCATACTCCAGGACCCTCCATCCTTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp ACATCTGTGAAGTGTAACTGTTCTCCAGCACTGATATGTAGCATGTaGCTACTTACAGATCTGACATTGTGGGCCACGTTCTTGCAAATG +
Preference number: 1 (lower is better)
Translates to: TSVKCNCSPALICSM*LLTDLTLWATFLQM
Trigger: CATTTGCAAGAACGTGGCCCACAATGTCAGATCTGTAAGTAGTCACATGCTACATATCAGTGCTGGAGAACAGTTACACTTCACAGATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 90 bp TATCATTTTCTTCTTTTCACCTCCAAATACACCAGGGAGCGTGTTTaGTGTAAGTGGCTTGGAACAACATATGAGGCAAGGAAGGAGTCT +
Preference number: 1 (lower is better)
Translates to: YHFLLFTSKYTRERV*CKWLGTTYEARKES
Trigger: AGACTCCTTCCTTGCCTCATATGTTGTTCCAAGCCACTTACACCAAACACGCTCCCTGGTGTATTTGGAGGTGAAAAGAAGAAAATGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 90 bp GACTCCACTGAATTAAGTGAGCGCAGAAGAAAAATAAGTGGTACATaGAAGAAGCACAATGTGTGTGAGGAGCACACACATGAGAGAATC +
Preference number: 1 (lower is better)
Translates to: DSTELSERRRKISGT*KKHNVCEEHTHERI
Trigger: GATTCTCTCATGTGTGTGCTCCTCACACACATTGTGCTTCTTTCATGTACCACTTATTTTTCTTCTGCGCTCACTTAATTCAGTGGAGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 90 bp TTCATAGTTTCCTGCCATGATGAGTTTAGCAAATTTCCTGGATCCTaGCACATTACAGCGCTCTCCAATGTTAACAAAGTTGGTGTATGG +
Preference number: 1 (lower is better)
Translates to: FIVSCHDEFSKFPGS*HITALSNVNKVGVW
Trigger: CCATACACCAACTTTGTTAACATTGGAGAGCGCTGTAATGTGGCAGGATCCAGGAAATTTGCTAAACTCATCATGGCAGGAAACTATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 90 bp CACTATTTCTGCAGTAAAATTTGGTGTACTGTCAGACGAATTCCCTaGATCTTTCTTCATCTTCAGCAACCTCTAGCCAGTTTTGACCCT +
Preference number: 1 (lower is better)
Translates to: HYFCSKIWCTVRRIP*IFLHLQQPLASFDP
Trigger: AGGGTCAAAACTGGCTAGAGGTTGCTGAAGATGAAGAAAGATTCAGGGAATTCGTCTGACAGTACACCAAATTTTACTGCAGAAATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAACGCTTGCCCCAATCATaGGGGCCCAGGAACACCATG +
Preference number: 2 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTERLPQS*GPRNTM
Trigger: CATGGTGTTCCTGGGCCCTCATGATTGGGGCAAGCG...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp GCCTTCTCCAGGAAGTCCCCCTCCCCCTCCTTGAGGCTGATGCTGTaGACTATGCACTTCCCTTGGCAGCACTTCAACCCAGCTTCAATC +
Preference number: 2 (lower is better)
Translates to: AFSRKSPSPSLRLML*TMHFPWQHFNPASI
Trigger: GATTGAAGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAAGGAGGGGGAGGGGGACTTCCTGGAGAAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAGGCCCAGGAACACCATaGGCCTTGGCACTTTGTTGC +
Preference number: 2 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTEGPGTP*ALALCC
Trigger: GCAACAAAGTGCCAAGGCTCATGGTGTTCCTGGGCC...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp ATGCACAGGGGCACCTTGGCAATGTCAGGCTCAGAAGCAATGGAGTaGCAAAATCTGGTCATTGCACTGGGACCATCCAGCATGCCGTCG +
Preference number: 2 (lower is better)
Translates to: MHRGTLAMSGSEAME*QNLVIALGPSSMPS
Trigger: CGACGGCATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGCCCCTGTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CAA 90 bp CCCCTCCCCCTCCTTGAGGCTGATGCTGTTGACTATGCACTTCCCTaGGCAGCACTTCAACCCAGCTTCAATCACGGCAAAGTTAGAAGA +
Preference number: 2 (lower is better)
Translates to: PLPLLEADAVDYALP*AALQPSFNHGKVRR
Trigger: TCTTCTAACTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAAGGAGGGGGAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp AGGGAGGTTGCCGGCATTGACTATCCCCATGTCCATACCAAACTTGATCGCGTGGATGTGATCAGGTGTTaGACCACAGCATCCACCAAC +
Preference number: 2 (lower is better)
Translates to: REVAGIDYPHVHTKLDRVDVIRC*TTASTN
Trigger: GTTGGTGGATGCTGTGGTTCAACACCTGATCACATC...CACGCGATCAAGTTTGGTATGGACATGGGGATAGTCAATGCCGGCAACCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp ACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCTTTCCACCTGTGCTTTaGCAATGCTCAGGGCTTCTT +
Preference number: 2 (lower is better)
Translates to: TELKKVLVDSIIHREVAGFPPVL*QCSGLL
Trigger: AAGAAGCCCTGAGCATTGCCAAAGCACAGGTGGAAA...GCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCTTCTTCAGCTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp CATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTTGGATCTGGTCATTGCACTaGGACCATCCAGCATGCCGT +
Preference number: 2 (lower is better)
Translates to: HALLLEWLPSLGRRRISWIWSLH*DHPACR
Trigger: ACGGCATGCTGGATGGTCCCAGTGCAATGACCAGAT...CCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp GTTCCAGATGAGGTCTTCACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATAGGAGGTTGCCGGCATTaGCTATCCCCATGTCCATAC +
Preference number: 2 (lower is better)
Translates to: VPDEVFTELKKVLVDSIIGGCRH*LSPCPY
Trigger: GTATGGACATGGGGATAGTCAATGCCGGCAACCTCC...TATGATGCTATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCTCATCTGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR GCA 90 bp GTTCCAGATGAGGTCTTCACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATAGCAAAGTCCTTCAGGTaGGTGGCCATCGTGGATGGT +
Preference number: 2 (lower is better)
Translates to: VPDEVFTELKKVLVDSIIAKSFR*VAIVDG
Trigger: ACCATCCACGATGGCCACGCACCTGAAGGACTTTGC...TATGATGCTATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCTCATCTGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR GCA 90 bp TGCATTGCTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTTGGAATCCCATTTCCACCTGTaGTTTGGCAATGCTCAGGGC +
Preference number: 2 (lower is better)
Translates to: CIASRMASIPRKEKDKLESHFHL*FGNAQG
Trigger: GCCCTGAGCATTGCCAAAGCACAGGTGGAAATGGGA...TTCCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp CGTGATAAAGGAACACACCATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGAGGGAAGACCTGCATTTaGGTAACAGAGGACATAGGC +
Preference number: 2 (lower is better)
Translates to: RDKGTHHALLLEWLPSLGGKTCI*VTEDIG
Trigger: GCCTATGTCCTCTGTTACCCAAATGCAGGTCTTCCC...TCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp CATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTTGGACTATGCACTTCCCTTaGCAGCACTTCAACCCAGCT +
Preference number: 2 (lower is better)
Translates to: HALLLEWLPSLGRRRISWTMHFP*QHFNPA
Trigger: AGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGT...CCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR GCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCTGGGGAAAAGCTGGGTaGCCTGCTTTGAATGCAAAA +
Preference number: 2 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPWGKAG*PALNAK
Trigger: TTTTGCATTCAAAGCAGGGCACCCAGCTTTTCCCCA...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp CGTGATAAAGGAACACACCATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGACCTGTGCTTTGGCAATaGTCAGGGCTTCTTCATAGT +
Preference number: 2 (lower is better)
Translates to: RDKGTHHALLLEWLPSLGPVLWQ*SGLLHS
Trigger: ACTATGAAGAAGCCCTGAGCATTGCCAAAGCACAGG...TCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp GTTCCAGATGAGGTCTTCACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACGTGGCCATCGTGGATaGTGTTTCATCATAGTCGCC +
Preference number: 2 (lower is better)
Translates to: VPDEVFTELKKVLVDSIIRGHRG*CFIIVA
Trigger: GGCGACTATGATGAAACACCATCCACGATGGCCACG...TATGATGCTATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCTCATCTGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CAA 90 bp TTCCTGGATCCTGCCACATTACAGCGCTCTCCAATGTTAACAAAGTaGGTGTATGGTCCAATCCTGAAGGGCTCTAGACCAGACAGTAAC +
Preference number: 2 (lower is better)
Translates to: FLDPATLQRSPMLTK*VYGPILKGSRPDSN
Trigger: GTTACTGTCTGGTCTAGAGCCCTTCAGGATTGGACCATACACCAACTTTGTTAACATTGGAGAGCGCTGTAATGTGGCAGGATCCAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGTCAGAGCCTGTGCTCTaGGCAATTTCTCCAGAAATA +
Preference number: 2 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLSEPVL*AISPEI
Trigger: TATTTCTGGAGAAATTGCTCAGAGCACAGGCTCTGA...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp TGGCAGCACTTCAACCCAGCTTCAATCACGGCAAAGTTAGAAGAGTCAATGCACGCAATTTCCCTGATGTaGTCAGGTGTTGAACCACAG +
Preference number: 2 (lower is better)
Translates to: WQHFNPASITAKLEESMHAISLM*SGVEPQ
Trigger: CTGTGGTTCAACACCTGATCACATCAGGGAAATTGC...GTGCATTGACTCTTCTAACTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGTGTATGGTCCAATCCTaGAGGGCTCTAGACCAGACA +
Preference number: 2 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSCMVQS*RALDQT
Trigger: TGTCTGGTCTAGAGCCCTTCAGGATTGGACCATACA...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR GCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACGCCTTGGCACTTTGTTaGTTCTCATTTAAGGTCCCT +
Preference number: 2 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHALALC*FSFKVP
Trigger: AGGGACCTTAAATGAGAAGCAACAAAGTGCCAAGGC...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGGAACAAATGCCTTCCTaGGTCAAAGGTAAAAATGGG +
Preference number: 2 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLEQMPS*VKGKNG
Trigger: CCCATTTTTACCTTTGACCCAGGAAGGCATTTGTTC...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGAGGAAGTCTCAGCACTTaGCTCCTGTCACACAGCAGC +
Preference number: 2 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGGSLST*LLSHSS
Trigger: GCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCC...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp GCCGGCATTGACTATCCCCATGTCCATACCAAACTTGATCGCGTGATAAAGGAAAACAAAGTTGGTGTATaGTCCAATCCTGAAGGGCTC +
Preference number: 2 (lower is better)
Translates to: AGIDYPHVHTKLDRVIKENKVGV*SNPEGL
Trigger: GAGCCCTTCAGGATTGGACCATACACCAACTTTGTT...TTCCTTTATCACGCGATCAAGTTTGGTATGGACATGGGGATAGTCAATGCCGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp AGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCATTGACTATCCCCAAAGATGATGTCATTTaGATTGAAGCCCACTTTGTC +
Preference number: 2 (lower is better)
Translates to: RSLWIASYTGRLPALTIPKDDVI*IEAHFV
Trigger: GACAAAGTGGGCTTCAATCCAAATGACATCATCTTT...GGGGATAGTCAATGCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CAA 90 bp ATTGCTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTaGGAAAGACCTCCACTTATTCTGACTCCTGGTAAGGTTTCCTTA +
Preference number: 2 (lower is better)
Translates to: IASRMASIPRKEKDK*ERPPLILTPGKVSL
Trigger: TAAGGAAACCTTACCAGGAGTCAGAATAAGTGGAGGTCTTTCCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTGTTACACCTCAGAAGTaGGATGTCACAGGAGAAAAG +
Preference number: 2 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSVTPQK*DVTGEK
Trigger: CTTTTCTCCTGTGACATCTCACTTCTGAGGTGTAAC...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCTGTCCAGCAAGCAGTaGGCCTCTGCCACAGAGTTC +
Preference number: 2 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHLSSKQ*ASATEF
Trigger: GAACTCTGTGGCAGAGGCTCACTGCTTGCTGGACAG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGAGTGCAGGCAAAGAGTTaGGTGGCTTTAAGTCAGCCC +
Preference number: 2 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGVQAKS*VALSQP
Trigger: GGGCTGACTTAAAGCCACTCAACTCTTTGCCTGCAC...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp ATGAGTCTGGGCATATCGCAAGAGTTTCTCAGTAGCCTCAGAGTCTTTGTTCCATGGAGTTGCAAAATCTaGTCATTGCACTGGGACCAT +
Preference number: 2 (lower is better)
Translates to: MSLGISQEFLSSLRVFVPWSCKI*SLHWDH
Trigger: ATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCA...TGGAACAAAGACTCTGAGGCTACTGAGAAACTCTTGCGATATGCCCAGACTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp ATGAGTCTGGGCATATCGCAAGAGTTTCTCAGTAGCCTCAGAGTCTTTGTTCCACAGGCTCAGAAGCAATaGAGTTGCAAAATCTGGTCA +
Preference number: 2 (lower is better)
Translates to: MSLGISQEFLSSLRVFVPQAQKQ*SCKIWS
Trigger: TGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTG...TGGAACAAAGACTCTGAGGCTACTGAGAAACTCTTGCGATATGCCCAGACTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CAA 90 bp GTAAGCTCTGGTGCACACATTGACTTTAACATCTGTTTCTGTTGCTaGTCCTTCCTCATCAAAAGCCATAACCACCACAGCAGCTCCAAA +
Preference number: 2 (lower is better)
Translates to: VSSGAHIDFNICFCC*SFLIKSHNHHSSSK
Trigger: TTTGGAGCTGCTGTGGTGGTTATGGCTTTTGATGAGGAAGGACAAGCAACAGAAACAGATGTTAAAGTCAATGTGTGCACCAGAGCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCAACCAGGACCTTCCCTaGATACTTCCACCACCAGCC +
Preference number: 2 (lower is better)
Translates to: PLLPSVAVVHSILLHHDINQDLP*ILPPPA
Trigger: GGCTGGTGGTGGAAGTATTCAGGGAAGGTCCTGGTT...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp TTGTCCTTCCTCATCAAAAGCCATAACCACCACAGCAGCTCCAAACTTCTTAATGCAAAATCTGGTCATTaGACTGGGACCATCCAGCAT +
Preference number: 2 (lower is better)
Translates to: LSFLIKSHNHHSSSKLLNAKSGH*TGTIQH
Trigger: ATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGC...ATTAAGAAGTTTGGAGCTGCTGTGGTGGTTATGGCTTTTGATGAGGAAGGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGCGTGTTTGGTGTAAGTaGCTTGGAACAACATATGAG +
Preference number: 2 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVRVWCK*LGTTYE
Trigger: CTCATATGTTGTTCCAAGCCACTTACACCAAACACG...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp TCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTaGCTGAAACCACTTAGACTGAAATGTCACATTTCTCACGGTGAG +
Preference number: 2 (lower is better)
Translates to: SQEKRKEYFSPCPGP*LKPLRLKCHISHGE
Trigger: CTCACCGTGAGAAATGTGACATTTCAGTCTAAGTGGTTTCAGCAAAGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp GCATACAAGTTATGTTCCTCCATTCCAGTACCAATGGTAAGGATGTaGGGGTCAAAGATGATGTCATTTGGATTGAAGCCCACTTTGTCC +
Preference number: 2 (lower is better)
Translates to: AYKLCSSIPVPMVRM*GSKMMSFGLKPTLS
Trigger: GGACAAAGTGGGCTTCAATCCAAATGACATCATCTTTGACCCCAACATCCTTACCATTGGTACTGGAATGGAGGAACATAACTTGTATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTAGAGCACAAACCAGGTaGGGTTTGGCAGCCTGTGCA +
Preference number: 2 (lower is better)
Translates to: ERSGIYITFNASIYCPSSRAQTR*GLAACA
Trigger: TGCACAGGCTGCCAAACCTCACCTGGTTTGTGCTCT...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp GATGTTGGGGTCAAAGATGATGTCATTTGGATTGAAGCCCACTTTGTCCACAAGCAGAAGCAATGGAGTTaGAAAATCTGGTCATTGCAC +
Preference number: 2 (lower is better)
Translates to: DVGVKDDVIWIEAHFVHKQKQWS*KIWSLH
Trigger: GTGCAATGACCAGATTTTGCAACTCCATTGCTTCTG...CTTGTGGACAAAGTGGGCTTCAATCCAAATGACATCATCTTTGACCCCAACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CCA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGAGGAGAAGGATAAGTTaGAAAGACCTCCACTTATTC +
Preference number: 2 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSRRRIS*KDLHLF
Trigger: GAATAAGTGGAGGTCTTTCCAACTTATCCTTCTCCT...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR TCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATGAGATCAACCTCTaGAACAACAGGCTGGGAGAG +
Preference number: 2 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHDEINL*NNRLGE
Trigger: CTCTCCCAGCCTGTTGTTTCAGAGGTTGATCTCATC...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp CTGAAACCACTTAGACTGAAATGTCACATTTCTCACGGTGAGACTTaGCTCCAGGGTTGCGTTTCTCTATATATTCTCCTTGTATTCAAC +
Preference number: 2 (lower is better)
Translates to: LKPLRLKCHISHGET*LQGCVSLYILLVFN
Trigger: GTTGAATACAAGGAGAATATATAGAGAAACGCAACCCTGGAGCAAAGTCTCACCGTGAGAAATGTGACATTTCAGTCTAAGTGGTTTCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCGCTATGGATAACACATaGGAGGTGGCTTCTCTTTCT +
Preference number: 2 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIAMDNT*EVASLS
Trigger: AGAAAGAGAAGCCACCTCTCATGTGTTATCCATAGC...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR TCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTGCTTGGAACAACATATaGGGCAAGGAAGGAGTCTGT +
Preference number: 2 (lower is better)
Translates to: ERSGIYITFNASIYCPSSAWNNI*GKEGVC
Trigger: ACAGACTCCTTCCTTGCCTCATATGTTGTTCCAAGC...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATAAACCCAGGAACAAATaGCTTCCTGGGTCAAAGGTA +
Preference number: 2 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHKPRNK*LPGSKV
Trigger: TACCTTTGACCCAGGAAGGCATTTGTTCCTGGGTTT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCTTTTCTTCTACCATGTaGGTCCCAGAGCACAAACCA +
Preference number: 2 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIFSSTM*VPEHKP
Trigger: TGGTTTGTGCTCTGGGACCCACATGGTAGAAGAAAA...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCTTAGCAAAGGTCTTTaGTTTTGGGTGGCACTGATG +
Preference number: 2 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHLSKGL*FWVALM
Trigger: CATCAGTGCCACCCAAAACCAAAGACCTTTGCTAAG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTAGGTCCCTGGAAAAGTaGTTCTTTTCCAGAACCCTA +
Preference number: 2 (lower is better)
Translates to: ERSGIYITFNASIYCPSSRSLEK*FFSRTL
Trigger: TAGGGTTCTGGAAAAGAAGCACTTTTCCAGGGACCT...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATACTTTGCTCCAGGGTTaGGTTTCTCTATATATTCTC +
Preference number: 2 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHTLLQG*VSLYIL
Trigger: GAGAATATATAGAGAAACGCAACCCTGGAGCAAAGT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTATAACACATGAGAGGTaGCTTCTCTTTCTCTGTCAG +
Preference number: 2 (lower is better)
Translates to: ERSGIYITFNASIYCPSSITHER*LLFLCQ
Trigger: CTGACAGAGAAAGAGAAGCCACCTCTCATGTGTTAT...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCCGTCATGACATCAGTTaGTATAACTGCTGGAAATCT +
Preference number: 2 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIRHDIS*YNCWKS
Trigger: AGATTTCCAGCAGTTATACCAACTGATGTCATGACG...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 90 bp CTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTaGGAAAGATTACAAACATATAGGATTGTCATTACCCAACTATCA +
Preference number: 2 (lower is better)
Translates to: LRTSGTKSVCYLKIS*ERLQTYRIVITQLS
Trigger: TGATAGTTGGGTAATGACAATCCTATATGTTTGTAATCTTTCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR GCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTGGTACAAAAAGTGTGTaGTACTTGAAAATAAGCTTG +
Preference number: 2 (lower is better)
Translates to: ERSGIYITFNASIYCPSSGTKSV*YLKISL
Trigger: CAAGCTTATTTTCAAGTAGCACACACTTTTTGTACC...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp AAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTaGATCGCAGTCAACCAGCCTCTCCCAGCAGGGCAG +
Preference number: 3 (lower is better)
Translates to: KVLLFQNPRGLL*IAVNQPLPAGQ
Trigger: CTGCCCTGCTGGGAGAGGCTGGTTGACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp TTGCACTGGGACCATCCAGCATGCCGTCGTCCATGTTaGTATCGAGCACCTGAGCTCCCATTTCCACCTGTG +
Preference number: 3 (lower is better)
Translates to: LHWDHPACRRPC*YRAPELPFPPV
Trigger: CACAGGTGGAAATGGGAGCTCAGGTGCTCGATATCAACATGGACGACGGCATGCTGGATGGTCCCAGTGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp CGTGATAAAGGAACACACCATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGATCCCCCTCCCCCTCCTaGAGGCTGATGCTGTTGACT +
Preference number: 3 (lower is better)
Translates to: RDKGTHHALLLEWLPSLGSPSPS*RLMLLT
Trigger: AGTCAACAGCATCAGCCTCAAGGAGGGGGAGGGGGA...TCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR GCA 72 bp GGATCTCAGAGGCCAACTGTGAGGGAACATGCTAGGTaGATGCAATCACACACATCAGGGCCCCGGTTAGAA +
Preference number: 3 (lower is better)
Translates to: GSQRPTVREHAR*MQSHTSGPRLE
Trigger: TTCTAACCGGGGCCCTGATGTGTGTGATTGCATGCACCTAGCATGTTCCCTCACAGTTGGCCTCTGAGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 72 bp ACCATGTGGGTCCCAGAGCACAAACCAGGTGAGGTTTaGCAGCCTGTGCATTTACTCACTAAGCCTTCCTGC +
Preference number: 3 (lower is better)
Translates to: TMWVPEHKPGEV*QPVHLLTKPSC
Trigger: GCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCAAACCTCACCTGGTTTGTGCTCTGGGACCCACATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp TCCGCTTGCCCCAATCATGAGGGCCCAGGAACACCATaGGCCTTGGCACTTTGTTGCTTCTCATTTAAGGTC +
Preference number: 3 (lower is better)
Translates to: SACPNHEGPGTP*ALALCCFSFKV
Trigger: GACCTTAAATGAGAAGCAACAAAGTGCCAAGGCTCATGGTGTTCCTGGGCCCTCATGATTGGGGCAAGCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp GGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTaGGCCTCTGCCACAGAGTTCTACATCCGCTTAGTT +
Preference number: 3 (lower is better)
Translates to: GISVPVRLSSKQ*ASATEFYIRLV
Trigger: AACTAAGCGGATGTAGAACTCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp TCCCAGAGCACAAACCAGGTGAGGTTTGGCAGCCTGTaGATTTACTCACTAAGCCTTCCTGCTGGTCCTGTT +
Preference number: 3 (lower is better)
Translates to: SQSTNQVRFGSL*IYSLSLPAGPV
Trigger: AACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCAAACCTCACCTGGTTTGTGCTCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 72 bp GCCCCAATCATGAGGGCCCAGGAACACCATGAGCCTTaGCACTTTGTTGCTTCTCATTTAAGGTCCCTGGAA +
Preference number: 3 (lower is better)
Translates to: APIMRAQEHHEP*HFVASHLRSLE
Trigger: TTCCAGGGACCTTAAATGAGAAGCAACAAAGTGCCAAGGCTCATGGTGTTCCTGGGCCCTCATGATTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACCCCTGTCCAGGTCCTTaGCTGAAACCACTTAGACTG +
Preference number: 3 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHPCPGP*LKPLRL
Trigger: CAGTCTAAGTGGTTTCAGCAAAGGACCTGGACAGGG...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp GCACCTTGGCAATGTCAGGCTCAGAAGCAATGGAGTTaGAAAATCTGGTCATTGCACTGGGACCATCCAGCA +
Preference number: 3 (lower is better)
Translates to: APWQCQAQKQWS*KIWSLHWDHPA
Trigger: TGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp CACAGCAAAGTCCTTCAGGTGCGTGGCCATCGTGGATaGTGTTTCATCATAGTCGCCAAAAGTGTTGGGAAG +
Preference number: 3 (lower is better)
Translates to: HSKVLQVRGHRG*CFIIVAKSVGK
Trigger: CTTCCCAACACTTTTGGCGACTATGATGAAACACCATCCACGATGGCCACGCACCTGAAGGACTTTGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp CATCCACAGCAAAGTCCTTCAGGTGCGTGGCCATCGTaGATGGTGTTTCATCATAGTCGCCAAAAGTGTTGG +
Preference number: 3 (lower is better)
Translates to: HPQQSPSGAWPS*MVFHHSRQKCW
Trigger: CCAACACTTTTGGCGACTATGATGAAACACCATCCACGATGGCCACGCACCTGAAGGACTTTGCTGTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp TATCGAGCACCTGAGCTCCCATTTCCACCTGTGCTTTaGCAATGCTCAGGGCTTCTTCATAGTTTCCTGCCA +
Preference number: 3 (lower is better)
Translates to: YRAPELPFPPVL*QCSGLLHSFLP
Trigger: TGGCAGGAAACTATGAAGAAGCCCTGAGCATTGCCAAAGCACAGGTGGAAATGGGAGCTCAGGTGCTCGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp ACAGGGGCACCTTGGCAATGTCAGGCTCAGAAGCAATaGAGTTGCAAAATCTGGTCATTGCACTGGGACCAT +
Preference number: 3 (lower is better)
Translates to: TGAPWQCQAQKQ*SCKIWSLHWDH
Trigger: ATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGCCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp TCCTTGAGGCTGATGCTGTTGACTATGCACTTCCCTTaGCAGCACTTCAACCCAGCTTCAATCACGGCAAAG +
Preference number: 3 (lower is better)
Translates to: SLRLMLLTMHFP*QHFNPASITAK
Trigger: CTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 72 bp CCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTaGGTCCGTGCCTTCAGAGCCTGTGCTCTGAGCAAT +
Preference number: 3 (lower is better)
Translates to: PVTQQLHRKVKV*VRAFRACALSN
Trigger: ATTGCTCAGAGCACAGGCTCTGAAGGCACGGACTCAGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp CTTCAGGTCCTAAACCGAGGCAACCAGGACCTTCCCTaGATACTTCCACCACCAGCCTATCACATTTTTGAG +
Preference number: 3 (lower is better)
Translates to: LQVLNRGNQDLP*ILPPPAYHIFE
Trigger: CTCAAAAATGTGATAGGCTGGTGGTGGAAGTATTCAGGGAAGGTCCTGGTTGCCTCGGTTTAGGACCTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp GTTGATATCGAGCACCTGAGCTCCCATTTCCACCTGTaGTTTGGCAATGCTCAGGGCTTCTTCATAGTTTCC +
Preference number: 3 (lower is better)
Translates to: VDIEHLSSHFHL*FGNAQGFFIVS
Trigger: GGAAACTATGAAGAAGCCCTGAGCATTGCCAAAGCACAGGTGGAAATGGGAGCTCAGGTGCTCGATATCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp AGAAAACGCCTTTGGAGTTGGTTTTCTTCTACCATGTaGGTCCCAGAGCACAAACCAGGTGAGGTTTGGCAG +
Preference number: 3 (lower is better)
Translates to: RKRLWSWFSSTM*VPEHKPGEVWQ
Trigger: CTGCCAAACCTCACCTGGTTTGTGCTCTGGGACCCACATGGTAGAAGAAAACCAACTCCAAAGGCGTTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GATGAGGTCTTCACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACACAGGTGGGAAGACCTGCATTaGGGTAACAGAGGACATAGG +
Preference number: 3 (lower is better)
Translates to: DEVFTELKKVLVDSIIHRWEDLH*GNRGHR
Trigger: CCTATGTCCTCTGTTACCCAAATGCAGGTCTTCCCA...CCTGTGTATGATGCTATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp CCTTGGCAGCACTTCAACCCAGCTTCAATCACGGCAAAGTTAGAAGAGTCAATGTGCAAAATCTGGTCATaGCACTGGGACCATCCAGCA +
Preference number: 3 (lower is better)
Translates to: PWQHFNPASITAKLEESMCKIWS*HWDHPA
Trigger: TGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCA...CATTGACTCTTCTAACTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp AGGGAGGTTGCCGGCATTGACTATCCCCATGTCCATACCAAACTTGATCGCGTGTCAGAAGCAATGGAGTaGCAAAATCTGGTCATTGCA +
Preference number: 3 (lower is better)
Translates to: REVAGIDYPHVHTKLDRVSEAME*QNLVIA
Trigger: TGCAATGACCAGATTTTGCAACTCCATTGCTTCTGA...CACGCGATCAAGTTTGGTATGGACATGGGGATAGTCAATGCCGGCAACCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 72 bp CAAGCAAATCTTCCTGCCTCAACTTCCCAAATCCTGTaGTTACAGACAAGGGTAGCACTTCTGGCTACGTCC +
Preference number: 3 (lower is better)
Translates to: QANLPASTSQIL*LQTRVALLATS
Trigger: GGACGTAGCCAGAAGTGCTACCCTTGTCTGTAATCACAGGATTTGGGAAGTTGAGGCAGGAAGATTTGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp CTTCTATTTACTGTCCCTCATCTGTTCCTTTCCTGCTaGTCCATCTCTGTTCTTCAGGTCCTAAACCGAGGC +
Preference number: 3 (lower is better)
Translates to: LLFTVPHLFLSC*SISVLQVLNRG
Trigger: GCCTCGGTTTAGGACCTGAAGAACAGAGATGGAGCAGCAGGAAAGGAACAGATGAGGGACAGTAAATAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 72 bp CTCACTAAGCCTTCCTGCTGGTCCTGTTTTTGTTTTTaGAGAGGCTATGGAACTCAGGATGGCCTGTTACTC +
Preference number: 3 (lower is better)
Translates to: LTKPSCWSCFCF*RGYGTQDGLLL
Trigger: GAGTAACAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGAAGGCTTAGTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 72 bp CGTGATAAAGGAACACACCATGCATTGCTTCTCGAATaGCTTCCATCCCTCGGAAGGAGAAGGATAAGTTGG +
Preference number: 3 (lower is better)
Translates to: RDKGTHHALLLE*LPSLGRRRISW
Trigger: CCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCAACAGACAAGAAACCTaGAAGGATATGACTGTGCCT +
Preference number: 3 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPNRQET*KDMTVP
Trigger: AGGCACAGTCATATCCTTCAAGGTTTCTTGTCTGTT...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp ACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCAGAGGACATAGGCTGTaGTACATTTTCCAATTGTTT +
Preference number: 3 (lower is better)
Translates to: TELKKVLVDSIIHREVAGRGHRL*YIFQLF
Trigger: AAACAATTGGAAAATGTACAACAGCCTATGTCCTCT...GCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCTTCTTCAGCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp GATGTTGGGGTCAAAGATGATGTCATTTGGATTGAAGCCCACTTTGTCCACAAGTTGAGGCTGATGCTGTaGACTATGCACTTCCCTTGG +
Preference number: 3 (lower is better)
Translates to: DVGVKDDVIWIEAHFVHKLRLML*TMHFPW
Trigger: CCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAA...CTTGTGGACAAAGTGGGCTTCAATCCAAATGACATCATCTTTGACCCCAACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR TCA 72 bp CATATGAGGCAAGGAAGGAGTCTGTCTCACACAAGATaGGTCCTGATGCTATGGATAACACATGAGAGGTGG +
Preference number: 3 (lower is better)
Translates to: HMRQGRSLSHTR*VLMLWITHERW
Trigger: CCACCTCTCATGTGTTATCCATAGCATCAGGACTCATCTTGTGTGAGACAGACTCCTTCCTTGCCTCATATG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp CACTTTGTTGCTTCTCATTTAAGGTCCCTGGAAAAGTaGTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCA +
Preference number: 3 (lower is better)
Translates to: HFVASHLRSLEK*FFSRTLEACSA
Trigger: TGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGGGACCTTAAATGAGAAGCAACAAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp AAACTTGATCGCGTGATAAAGGAACACACCATGCATTaGTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAA +
Preference number: 3 (lower is better)
Translates to: KLDRVIKEHTMH*FSNGFHPSEGE
Trigger: TTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CCA 72 bp CTTCTTTTCACCTCCAAATACACCAGGGAGCGTGTTTaGTGTAAGTGGCTTGGAACAACATATGAGGCAAGG +
Preference number: 3 (lower is better)
Translates to: LLFTSKYTRERV*CKWLGTTYEAR
Trigger: CCTTGCCTCATATGTTGTTCCAAGCCACTTACACCAAACACGCTCCCTGGTGTATTTGGAGGTGAAAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CCA 72 bp TGGCAGCCTGTGCATTTACTCACTAAGCCTTCCTGCTaGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACT +
Preference number: 3 (lower is better)
Translates to: WQPVHLLTKPSC*SCFCFWRGYGT
Trigger: AGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGAAGGCTTAGTGAGTAAATGCACAGGCTGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GATGAGGTCTTCACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACACAGGCCAATGTTAACAAAGTaGGTGTATGGTCCAATCCTG +
Preference number: 3 (lower is better)
Translates to: DEVFTELKKVLVDSIIHRPMLTK*VYGPIL
Trigger: CAGGATTGGACCATACACCAACTTTGTTAACATTGG...CCTGTGTATGATGCTATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCTCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR GCA 72 bp ATGCTTCTATTTACTGTCCCTCATCTGTTCCTTTCCTaGTGCTCCATCTCTGTTCTTCAGGTCCTAAACCGA +
Preference number: 3 (lower is better)
Translates to: MLLFTVPHLFLS*CSISVLQVLNR
Trigger: TCGGTTTAGGACCTGAAGAACAGAGATGGAGCAGCAGGAAAGGAACAGATGAGGGACAGTAAATAGAAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp AAGTGTAACTGTTCTCCAGCACTGATATGTAGCATGTaGCTACTTACAGATCTGACATTGTGGGCCACGTTC +
Preference number: 3 (lower is better)
Translates to: KCNCSPALICSM*LLTDLTLWATF
Trigger: GAACGTGGCCCACAATGTCAGATCTGTAAGTAGTCACATGCTACATATCAGTGCTGGAGAACAGTTACACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTGCTTTAAGTCAGCCCTaGGTCCAGCTCTGCACAGGA +
Preference number: 3 (lower is better)
Translates to: ERSGIYITFNASIYCPSSALSQP*VQLCTG
Trigger: TCCTGTGCAGAGCTGGACCAAGGGCTGACTTAAAGC...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp GTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTaGTTCACCTTTATTGCCAAGTGTAGCTGTAGTTCA +
Preference number: 3 (lower is better)
Translates to: VDSRDLLCPYFL*FTFIAKCSCSS
Trigger: TGAACTACAGCTACACTTGGCAATAAAGGTGAATCACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR GCA 72 bp TCCTGCCATGATGAGTTTAGCAAATTTCCTGGATCCTaGCACATTACAGCGCTCTCCAATGTTAACAAAGTT +
Preference number: 3 (lower is better)
Translates to: SCHDEFSKFPGS*HITALSNVNKV
Trigger: AACTTTGTTAACATTGGAGAGCGCTGTAATGTGGCAGGATCCAGGAAATTTGCTAAACTCATCATGGCAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR GCA 72 bp TCTGGTGCACACATTGACTTTAACATCTGTTTCTGTTaGTTGTCCTTCCTCATCAAAAGCCATAACCACCAC +
Preference number: 3 (lower is better)
Translates to: SGAHIDFNICFC*LSFLIKSHNHH
Trigger: GTGGTGGTTATGGCTTTTGATGAGGAAGGACAAGCAACAGAAACAGATGTTAAAGTCAATGTGTGCACCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATAGTGCAGGCAAAGAGTaGAGTGGCTTTAAGTCAGCC +
Preference number: 3 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHSAGKE*SGFKSA
Trigger: GGCTGACTTAAAGCCACTCAACTCTTTGCCTGCACT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCCTGGAGTTCTGGCCTaGTTCACATCTGTGAAGTGT +
Preference number: 3 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHPGVLA*FTSVKC
Trigger: ACACTTCACAGATGTGAACAAGGCCAGAACTCCAGG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp TGCAGTAAAATTTGGTGTACTGTCAGACGAATTCCCTaGATCTTTCTTCATCTTCAGCAACCTCTAGCCAGT +
Preference number: 3 (lower is better)
Translates to: CSKIWCTVRRIP*IFLHLQQPLAS
Trigger: ACTGGCTAGAGGTTGCTGAAGATGAAGAAAGATTCAGGGAATTCGTCTGACAGTACACCAAATTTTACTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCAAAGGTCTTTGGTTTaGGGTGGCACTGATGTAAGC +
Preference number: 3 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHQRSLV*GGTDVS
Trigger: GCTTACATCAGTGCCACCCAAAACCAAAGACCTTTG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp ACAGTAAACTATATGACAGTGATTCCTTCTCACAGATaGATGTTCCAAAGCCTAAAGAACATGCCTGCCATG +
Preference number: 3 (lower is better)
Translates to: TVNYMTVIPSHR*MFQSLKNMPAM
Trigger: CATGGCAGGCATGTTCTTTAGGCTTTGGAACATTCATCTGTGAGAAGGAATCACTGTCATATAGTTTACTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp ATGGGATTAGATCAACGACATATTTGGGGAGCCAGCTaGAAGAATGGCAAGGAAATAAGAAGACTTAGTAAC +
Preference number: 3 (lower is better)
Translates to: MGLDQRHIWGAS*KNGKEIRRLSN
Trigger: GTTACTAAGTCTTCTTATTTCCTTGCCATTCTTTCAGCTGGCTCCCCAAATATGTCGTTGATCTAATCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp GAATTAAGTGAGCGCAGAAGAAAAATAAGTGGTACATaGAAGAAGCACAATGTGTGTGAGGAGCACACACAT +
Preference number: 3 (lower is better)
Translates to: ELSERRRKISGT*KKHNVCEEHTH
Trigger: ATGTGTGTGCTCCTCACACACATTGTGCTTCTTTCATGTACCACTTATTTTTCTTCTGCGCTCACTTAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp AATCTTTCTTCATCTTCAGCAACCTCTAGCCAGTTTTaGCCCTTTGCATTCCACATGAATCATCTGCTTATC +
Preference number: 3 (lower is better)
Translates to: NLSSSSATSSQF*PFAFHMNHLLI
Trigger: GATAAGCAGATGATTCATGTGGAATGCAAAGGGTCAAAACTGGCTAGAGGTTGCTGAAGATGAAGAAAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCCAGATGATAATGCCTTaGGGAGTCACTTTCTCTCTT +
Preference number: 3 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIQMIMP*GVTFSL
Trigger: AAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTG...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATATGGAGAAAACGCCTTaGGAGTTGGTTTTCTTCTAC +
Preference number: 3 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHMEKTP*ELVFFY
Trigger: GTAGAAGAAAACCAACTCCAAAGGCGTTTTCTCCAT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp TTAGTTATTCCTGTTACTAGCCTGATTATATTGCCATaGCCAAAATGTAAGACATGGCTGAACATGCCTGGA +
Preference number: 3 (lower is better)
Translates to: LVIPVTSLIILP*PKCKTWLNMPG
Trigger: TCCAGGCATGTTCAGCCATGTCTTACATTTTGGTCATGGCAATATAATCAGGCTAGTAACAGGAATAACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR TCA 72 bp GTCATGACATCAGTTGGTATAACTGCTGGAAATCTTTaGCTTTATAGTTCACTTTGGAAAGATCTGGCATCT +
Preference number: 3 (lower is better)
Translates to: VMTSVGITAGNL*LYSSLWKDLAS
Trigger: AGATGCCAGATCTTTCCAAAGTGAACTATAAAGTCAAAGATTTCCAGCAGTTATACCAACTGATGTCATGAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAACTCATGGAGCTCCTCTaGAAAGGCCTCTGCCAGCCT +
Preference number: 4 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTELMELL*KGLCQP
Trigger: AGGCTGGCAGAGGCCTTTGCAGAGGAGCTCCATGAG...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGCTCGGTTCGGGTACTTaGCCCGGAGCTGCCAGACGT +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLLGSGT*PGAARR
Trigger: ACGTCTGGCAGCTCCGGGGCAAGTACCCGAACCGAG...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAACAGCCACAAACCTCTTaGCTCCTGTCTGCAGAGTTA +
Preference number: 4 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTEQPQTS*LLSAEL
Trigger: TAACTCTGCAGACAGGAGTCAAGAGGTTTGTGGCTG...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGACTTTCTTCCCTCCTGTaGCATGAGTCTGGGCATATC +
Preference number: 4 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRLSSLL*HESGHI
Trigger: GATATGCCCAGACTCATGGCACAGGAGGGAAGAAAG...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCCATCCAGCAGTCCCTTaGCCTGCTCCTGGTATGCGT +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPHPAVP*PAPGMR
Trigger: ACGCATACCAGGAGCAGGCCAAGGGACTGCTGGATG...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAATCCAACCACACCCCTaGCCTGCAGTTTCTTTTGAC +
Preference number: 4 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTEIQPHP*PAVSFD
Trigger: GTCAAAAGAAACTGCAGGCCAGGGGTGTGGTTGGAT...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp GGCACCTTGGCAATGTCAGGCTCAGAAGCAATGGAGTaGCAAAATCTGGTCATTGCACTGGGACCATCCAGC +
Preference number: 4 (lower is better)
Translates to: GTLAMSGSEAME*QNLVIALGPSS
Trigger: GCTGGATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTGACATTGCCAAGGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGATTTTCTGGCCACATCTaGAGAGCACTTGTTCATCCG +
Preference number: 4 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRFSGHI*RALVHP
Trigger: CGGATGAACAAGTGCTCTGCAGATGTGGCCAGAAAA...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCATTGACTATCCCCGGCCTGCTCCTGGTATaGGTCAACAAGCTCATCAAA +
Preference number: 4 (lower is better)
Translates to: RSLWIASYTGRLPALTIPGLLLV*VNKLIK
Trigger: TTTGATGAGCTTGTTGACGCATACCAGGAGCAGGCC...GGGGATAGTCAATGCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGGCAAAGTCCTTCAGGTaGGTGGCCATCGTGGATGGT +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLAKSFR*VAIVDG
Trigger: ACCATCCACGATGGCCACGCACCTGAAGGACTTTGC...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGAAAATTTCCTGGATCCTaGCACATTACAGCGCTCTCC +
Preference number: 4 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRKFPGS*HITALS
Trigger: GGAGAGCGCTGTAATGTGGCAGGATCCAGGAAATTT...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGACCTGTGCTTTGGCAATaGTCAGGGCTTCTTCATAGT +
Preference number: 4 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRPVLWQ*SGLLHS
Trigger: ACTATGAAGAAGCCCTGAGCATTGCCAAAGCACAGG...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCCGCGCTGTACCGTGGTaGAATTTTAACTGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVRAVPW*NFNCCV
Trigger: CACACAGCAGTTAAAATTGCACCACGGTACAGCGCG...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACTACTTGCCCCGGAGCTaGCAGACGTCAAAGAAAGGC +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHYLPRS*QTSKKG
Trigger: GCCTTTCTTTGACGTCTGGCAGCTCCGGGGCAAGTA...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGCCTCAGCGGCTTTTCTaGCCACATCTGCAGAGCACT +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLPQRLF*PHLQST
Trigger: AGTGCTCTGCAGATGTGGCCAGAAAAGCCGCTGAGG...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCACTATGCACTTCCCTTaGCAGCACTTCAACCCAGCT +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVTMHFP*QHFNPA
Trigger: AGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGT...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCAAACGTGGGCTTCACTaGATGAGGTTCAGAGAGCCA +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVKRGLH*MRFREP
Trigger: TGGCTCTCTGAACCTCATCCAGTGAAGCCCACGTTT...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGCTGGACACTCTGTGCTaGCCAGAATCCAACCACACC +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLLDTLC*PESNHT
Trigger: GGTGTGGTTGGATTCTGGCCAGCACAGAGTGTCCAG...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGTCAGTCCATAGAAGGTaGCTATGGGCTCAGCGGCCT +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLSVHRR*LWAQRP
Trigger: AGGCCGCTGAGCCCATAGCCACCTTCTATGGACTGA...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACAATGAGACACGCTGGTaGCAAAAGCCTCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHNETRW*QKPLPS
Trigger: AGACGGGAGAGGCTTTTGTCACCAGCGTGTCTCATT...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCAGGTCTTCACAGAGCTaGAGAAGGTCCTTGTGGATA +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVRSSQS*RRSLWI
Trigger: TATCCACAAGGACCTTCTTCAGCTCTGTGAAGACCT...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCGTGGGCTTCACTGGATaGGGTTCAGAGAGCCAATCA +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPVGFTG*GSESQS
Trigger: TGATTGGCTCTCTGAACCTCATCCAGTGAAGCCCAC...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGCCAGCGCCTTCACCATaGTGCTGCTGTAGTCATCGC +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVPAPSP*CCCSHR
Trigger: GCGATGACTACAGCAGCATCATGGTGAAGGCGCTGG...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGAGGATTCTGTCAGCCTaGTGCCTGTGGCCTGCTCGA +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVRILSA*CLWPAR
Trigger: TCGAGCAGGCCACAGGCATCAGGCTGACAGAATCCT...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp CGTGATAAAGGAACACACCATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGACAGCCACAAACCTCTTaGCTCCAAGTGTTCAAGGCC +
Preference number: 4 (lower is better)
Translates to: RDKGTHHALLLEWLPSLGQPQTS*LQVFKA
Trigger: GGCCTTGAACACTTGGAGTCAAGAGGTTTGTGGCTG...TCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCCTTTATCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCGCAAAATCTGGTCATTaGACTGGGACCATCCAGCAT +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVAKSGH*TGTIQH
Trigger: ATGCTGGATGGTCCCAGTGCAATGACCAGATTTTGC...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGTGGCCAGCACAATGGTaGCTTGGTAAGGGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLWPAQW*LGKGPL
Trigger: AAGAGGACCCTTACCAAGGCACCATTGTGCTGGCCA...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCTTCTTGCCGATGTCATaGACGTCCCCTTTAACAGTG +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVFLPMS*TSPLTV
Trigger: CACTGTTAAAGGGGACGTGCATGACATCGGCAAGAA...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACCGCCAACTATGTTCTTaGCGATGTCATGCACGTCCC +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHRQLCS*RCHARP
Trigger: GGGACGTGCATGACATCGGCAAGAACATAGTTGGCG...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACCCAGGCGCTCTTCAATaGAGCCATTCCTCCACTCAT +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHPGALQ*SHSSTH
Trigger: ATGAGTGGAGGAATGGCTCCATTGAAGAGCGCCTGG...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp CTCCTTGAGGCTGATGCTGTTGACTATGCACTTCCCTaGGCAGCACTTCAACCCAGCTTCAATCACGGCAAA +
Preference number: 4 (lower is better)
Translates to: LLEADAVDYALP*AALQPSFNHGK
Trigger: TTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGTGTATGGTCCAATCCTaGAGGGCTCTAGACCAGACA +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLCMVQS*RALDQT
Trigger: TGTCTGGTCTAGAGCCCTTCAGGATTGGACCATACA...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACTTGATATCGAGCACCTaGGCTCCCATTTCCACCTGT +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHLISST*APISTC
Trigger: ACAGGTGGAAATGGGAGCTCAGGTGCTCGATATCAA...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAGCCTGCAGTTTCTTTTaGCTAATCAGTATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTEACSFF*LISMFS
Trigger: GCTGAACATACTGATTAGTCAAAAGAAACTGCAGGC...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCGGCCTGCTCCTGGTATaGGTCAACAAGCTCATCAAA +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPGLLLV*VNKLIK
Trigger: TTTGATGAGCTTGTTGACGCATACCAGGAGCAGGCC...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp ATGAGTCTGGGCATATCGCAAGAGTTTCTCAGTAGCCTCAGAGTCTTTGTTCCAGTAAGATGTCGACCCTaGCATCCAGCAGTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: MSLGISQEFLSSLRVFVPVRCRP*HPAVPW
Trigger: CCAAGGGACTGCTGGATGGCAGGGTCGACATCTTAC...TGGAACAAAGACTCTGAGGCTACTGAGAAACTCTTGCGATATGCCCAGACTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp AGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCATTGACTATCCCCGATCGCAAACAAGGCTaGTTTGGCATTAGCTGTATC +
Preference number: 4 (lower is better)
Translates to: RSLWIASYTGRLPALTIPDRKQG*FGISCI
Trigger: GATACAGCTAATGCCAAAGCAGCCTTGTTTGCGATC...GGGGATAGTCAATGCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCGGGAAGACCTGCATTTaGGTAACAGAGGACATAGGC +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPGKTCI*VTEDIG
Trigger: GCCTATGTCCTCTGTTACCCAAATGCAGGTCTTCCC...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGAGGTGGATGTCATCCTaGACACTCTGTGCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVRWMSS*TLCAGQ
Trigger: CTGGCCAGCACAGAGTGTCCAGGATGACATCCACCT...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp TTGTGGATAGCATCATACACAGGGAGGTTGCCGGCATaGACTATCCCCATGTCCATACCAAACTTGATCGCG +
Preference number: 4 (lower is better)
Translates to: LWIASYTGRLPA*TIPMSIPNLIA
Trigger: CGCGATCAAGTTTGGTATGGACATGGGGATAGTCAATGCCGGCAACCTCCCTGTGTATGATGCTATCCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGAATGAGACACGCTGGTaGCAAAAGCCTCTCCCGTCT +
Preference number: 4 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSNETRW*QKPLPS
Trigger: AGACGGGAGAGGCTTTTGTCACCAGCGTGTCTCATT...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACGCAATTTCCCTGATGTaGTCAGGTGTTGAACCACAG +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHAISLM*SGVEPQ
Trigger: CTGTGGTTCAACACCTGATCACATCAGGGAAATTGC...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp ACAGAGCTGAAGAAGGTCCTTGTGGATAGCATCATACACAGGGAGGTTGCCGGCTTAAGATGTCATTGTTaGCTTTCAGTGGCCTGCTGT +
Preference number: 4 (lower is better)
Translates to: TELKKVLVDSIIHREVAGLRCHC*LSVACC
Trigger: ACAGCAGGCCACTGAAAGGCAACAATGACATCTTAA...GCCGGCAACCTCCCTGTGTATGATGCTATCCACAAGGACCTTCTTCAGCTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGACTGATGCCTGTGGCCTaGTCGATGCTGGCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGLMPVA*SMLASL
Trigger: GAGACTGGCCAGCATCGAGCAGGCCACAGGCATCAG...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTGTACCGCTGGATCATaGTCCCCATCCCACCGTCTA +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPCTAGS*SPSHRL
Trigger: TAGACGGTGGGATGGGGACCATGATCCAGCGGTACA...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GATGTTGGGGTCAAAGATGATGTCATTTGGATTGAAGCCCACTTTGTCCACAAGTGTACCGCTGGATCATaGTCCCCATCCCACCGTCTA +
Preference number: 4 (lower is better)
Translates to: DVGVKDDVIWIEAHFVHKCTAGS*SPSHRL
Trigger: TAGACGGTGGGATGGGGACCATGATCCAGCGGTACA...CTTGTGGACAAAGTGGGCTTCAATCCAAATGACATCATCTTTGACCCCAACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGGCATTGCTTCTCGAATaGCTTCCATCCCTCGGAAGG +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVALLLE*LPSLGR
Trigger: CCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGC...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp TCTGCACAGGACATCAGGGCTCAGCTAACAACCTGTTaGATTCTGAGAGCAGCAGATGATAATGCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: SAQDIRAQLTTC*ILRAADDNAFG
Trigger: CCCAAAGGCATTATCATCTGCTGCTCTCAGAATCAAACAGGTTGTTAGCTGAGCCCTGATGTCCTGTGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp CCTGCCACATTACAGCGCTCTCCAATGTTAACAAAGTaGGTGTATGGTCCAATCCTGAAGGGCTCTAGACCA +
Preference number: 4 (lower is better)
Translates to: PATLQRSPMLTK*VYGPILKGSRP
Trigger: TGGTCTAGAGCCCTTCAGGATTGGACCATACACCAACTTTGTTAACATTGGAGAGCGCTGTAATGTGGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
3UTR CAA 72 bp CGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTaGGAAAGACCTCCACTTATTCTGACTCCTGGTAAG +
Preference number: 4 (lower is better)
Translates to: RMASIPRKEKDK*ERPPLILTPGK
Trigger: CTTACCAGGAGTCAGAATAAGTGGAGGTCTTTCCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCGCTGACTTTATAACCTaGGGTAGAAACATCTTTCCA +
Preference number: 4 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVADFIT*GRNIFP
Trigger: TGGAAAGATGTTTCTACCTCAGGTTATAAAGTCAGC...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACTTTTCATCTAACAGCTaGGAACACACCACCACACTC +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHFSSNS*EHTTTL
Trigger: GAGTGTGGTGGTGTGTTCTCAGCTGTTAGATGAAAA...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGCTTAGTTTGTACCGCTaGATCATGGTCCCCATCCCA +
Preference number: 4 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSLSLYR*IMVPIP
Trigger: TGGGATGGGGACCATGATCCAGCGGTACAAACTAAG...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CCA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTGGTGCGTGGCCATCGTaGATGGTGTTTCATCATAGT +
Preference number: 4 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSGAWPS*MVFHHS
Trigger: ACTATGATGAAACACCATCCACGATGGCCACGCACC...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTATCTGGTCATTGCACTaGGACCATCCAGCATGCCGT +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPIWSLH*DHPACR
Trigger: ACGGCATGCTGGATGGTCCCAGTGCAATGACCAGAT...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTGATGTGATCAGGTGTTaGACCACAGCATCCACCAAC +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPDVIRC*TTASTN
Trigger: GTTGGTGGATGCTGTGGTTCAACACCTGATCACATC...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGGACCTCCACTTATTCTaGCTCCTGGTAAGGTTTCCT +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVDLHLF*LLVRFP
Trigger: AGGAAACCTTACCAGGAGTCAGAATAAGTGGAGGTC...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGTGTTTCGATGATATCTaGTCCAGCCAGCAAGTATTC +
Preference number: 4 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLCFDDI*SSQQVF
Trigger: GAATACTTGCTGGCTGGAGCAGATATCATCGAAACA...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CATGCATTGCTTCTCGAATGGCTTCCATCCCTCGGAAGGAGAAGGATAAGTTGGTGTTTCGATGATATCTaGTCCAGCCAGCAAGTATTC +
Preference number: 4 (lower is better)
Translates to: HALLLEWLPSLGRRRISWCFDDI*SSQQVF
Trigger: GAATACTTGCTGGCTGGAGCAGATATCATCGAAACA...CCAACTTATCCTTCTCCTTCCGAGGGATGGAAGCCATTCGAGAAGCAATGCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGAGGCTTCTTCACCTACTaGTTTGTCATTAAATATCTT +
Preference number: 4 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRGFFTY*FVIKYL
Trigger: AAGATATTTAATGACAAAGCAGTAGGTGAAGAAGCC...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTCTTAGTTTGTACCGCTaGATCATGGTCCCCATCCCA +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPLSLYR*IMVPIP
Trigger: TGGGATGGGGACCATGATCCAGCGGTACAAACTAAG...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp TGTAAGACATGGCTGAACATGCCTGGAGTTCTGGCCTaGTTCACATCTGTGAAGTGTAACTGTTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: CKTWLNMPGVLA*FTSVKCNCSPA
Trigger: TGCTGGAGAACAGTTACACTTCACAGATGTGAACAAGGCCAGAACTCCAGGCATGTTCAGCCATGTCTTACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCCAAAAATTGTTTCAATaGGTAAGATGTCGACCCTGC +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPQKLFQ*VRCRPC
Trigger: GCAGGGTCGACATCTTACTCATTGAAACAATTTTTG...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GACTCTTGTTGCATGGATAAAATTGATAGCATACAAGTTATGTTCCTCCATTCCCATCCAGCAGTCCCTTaGCCTGCTCCTGGTATGCGT +
Preference number: 4 (lower is better)
Translates to: DSCCMDKIDSIQVMFLHSHPAVP*PAPGMR
Trigger: ACGCATACCAGGAGCAGGCCAAGGGACTGCTGGATG...GGAATGGAGGAACATAACTTGTATGCTATCAATTTTATCCATGCAACAAGAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CCA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTCAGGCTCAGAAGCAATaGAGTTGCAAAATCTGGTCA +
Preference number: 4 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSQAQKQ*SCKIWS
Trigger: TGACCAGATTTTGCAACTCCATTGCTTCTGAGCCTG...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTATGAAAGGGATAAGGTaGCCAACAGCCTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSMKGIR*PTAFFM
Trigger: CATGAAGAAGGCTGTTGGCCACCTTATCCCTTTCAT...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTCATAGAAGGTGGCTATaGGCTCAGCGGCCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSHRRWL*AQRPGA
Trigger: TGCCCCAGGCCGCTGAGCCCATAGCCACCTTCTATG...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCCGGCGAACTCTCTCATaGAGCTCCTCTGCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIRRTLS*SSSAKA
Trigger: GGCCTTTGCAGAGGAGCTCCATGAGAGAGTTCGCCG...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCCCACAGCAAAATATTTaGCCTTTACGTTGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPPQQNI*PLRWRS
Trigger: ACTTCTCCAACGTAAAGGCCAAATATTTTGCTGTGG...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTGTCATAGCCCAGAATaGGACCAAGCCATTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPCHSPE*DQAISP
Trigger: TGGAGAAATGGCTTGGTCCCATTCTGGGCTATGACA...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGCAAGCTCATCAAATGTaGTGTTCCTATAATCTGGCC +
Preference number: 4 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSQAHQM*CSYNLA
Trigger: GGCCAGATTATAGGAACATCACATTTGATGAGCTTG...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGTAAGATGTCGACCCTaGCATCCAGCAGTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHVRCRP*HPAVPW
Trigger: CCAAGGGACTGCTGGATGGCAGGGTCGACATCTTAC...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACGTATCTTCAACAATGTaGTTTTCAATGCCCTTCACA +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHVSSTM*FSMPFT
Trigger: TGTGAAGGGCATTGAAAAGCACATTGTTGAAGATAC...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACAAAGATGATGTCATTTaGATTGAAGCCCACTTTGTC +
Preference number: 4 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHKDDVI*IEAHFV
Trigger: GACAAAGTGGGCTTCAATCCAAATGACATCATCTTT...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp GGTGCACACATTGACTTTAACATCTGTTTCTGTTGCTaGTCCTTCCTCATCAAAAGCCATAACCACCACAGC +
Preference number: 4 (lower is better)
Translates to: GAHIDFNICFCC*SFLIKSHNHHS
Trigger: GCTGTGGTGGTTATGGCTTTTGATGAGGAAGGACAAGCAACAGAAACAGATGTTAAAGTCAATGTGTGCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTGGAGGTTGCCGGCATTaGCTATCCCCATGTCCATAC +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSGGCRH*LSPCPY
Trigger: GTATGGACATGGGGATAGTCAATGCCGGCAACCTCC...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTCGTATTTTCTCTCTTTaGGAGACTCATAGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPRIFSL*ETHSGP
Trigger: AGGACCACTATGAGTCTCTCAAAGAGAGAAAATACG...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTTAAGATGTCATTGTTaGCTTTCAGTGGCCTGCTGT +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPLRCHC*LSVACC
Trigger: ACAGCAGGCCACTGAAAGGCAACAATGACATCTTAA...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCCGTGGCCATCGTGGATaGTGTTTCATCATAGTCGCC +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIRGHRG*CFIIVA
Trigger: GGCGACTATGATGAAACACCATCCACGATGGCCACG...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTCAGTGGCCAGCACAATaGTGCCTTGGTAAGGGTCCT +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSQWPAQ*CLGKGP
Trigger: AGGACCCTTACCAAGGCACCATTGTGCTGGCCACTG...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp GATGACATAGGTCATGGGATTAGATCAACGACATATTaGGGGAGCCAGCTGAAAGAATGGCAAGGAAATAAG +
Preference number: 4 (lower is better)
Translates to: DDIGHGIRSTTY*GSQLKEWQGNK
Trigger: CTTATTTCCTTGCCATTCTTTCAGCTGGCTCCCCAAATATGTCGTTGATCTAATCCCATGACCTATGTCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTaGCCCCTATTTCCTGTGATTCACCTTTATTGCCAA +
Preference number: 4 (lower is better)
Translates to: SIMPLSRLKRLA*PLFPVIHLYCQ
Trigger: TTGGCAATAAAGGTGAATCACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp TTATGTTCCTCCATTCCAGTACCAATGGTAAGGATGTaGGGGTCAAAGATGATGTCATTTGGATTGAAGCCC +
Preference number: 4 (lower is better)
Translates to: LCSSIPVPMVRM*GSKMMSFGLKP
Trigger: GGGCTTCAATCCAAATGACATCATCTTTGACCCCAACATCCTTACCATTGGTACTGGAATGGAGGAACATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR GCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGAGATCGCAAACAAGGCTaGTTTGGCATTAGCTGTATC +
Preference number: 4 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGDRKQG*FGISCI
Trigger: GATACAGCTAATGCCAAAGCAGCCTTGTTTGCGATC...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTTCCCATTTCCACCTGTaGTTTGGCAATGCTCAGGGC +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSSHFHL*FGNAQG
Trigger: GCCCTGAGCATTGCCAAAGCACAGGTGGAAATGGGA...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTAACATCTGTTTCTGTTaGTTGTCCTTCCTCATCAAA +
Preference number: 4 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSNICFC*LSFLIK
Trigger: TTTGATGAGGAAGGACAAGCAACAGAAACAGATGTT...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTCATTGTATACCTTTCTaGCTTCTTCACCTACTGCTT +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPHCIPF*LLHLLL
Trigger: AAGCAGTAGGTGAAGAAGCCAGAAAGGTATACAATG...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGACAAGCTCATCAAATGTaGTGTTCCTATAATCTGGCC +
Preference number: 4 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGQAHQM*CSYNLA
Trigger: GGCCAGATTATAGGAACATCACATTTGATGAGCTTG...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp TTGTCCTTCCTCATCAAAAGCCATAACCACCACAGCAGCTCCAAACTTCTTAATCAAAAATTGTTTCAATaGGTAAGATGTCGACCCTGC +
Preference number: 4 (lower is better)
Translates to: LSFLIKSHNHHSSSKLLNQKLFQ*VRCRPC
Trigger: GCAGGGTCGACATCTTACTCATTGAAACAATTTTTG...ATTAAGAAGTTTGGAGCTGCTGTGGTGGTTATGGCTTTTGATGAGGAAGGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR TCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCTTCCGCAATTTCCCTaGTGTGATCAGGTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHLPQFP*CDQVLN
Trigger: GTTCAACACCTGATCACATCAGGGAAATTGCGGAAG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATAATGCAAAGGAGCAATaGAGTCTGAGAGGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHNAKEQ*SLRGSG
Trigger: ACCACTGCCTCTCAGACTTCATTGCTCCTTTGCATT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CACTCTAAGGACCAGTGGTACAAAAAGTGTGTGCTACTTGAAAATAAGCTTGGACAGAAGCAATGGAGTTaGAAAATCTGGTCATTGCAC +
Preference number: 4 (lower is better)
Translates to: HSKDQWYKKCVLLENKLGQKQWS*KIWSLH
Trigger: GTGCAATGACCAGATTTTGCAACTCCATTGCTTCTG...TCCAAGCTTATTTTCAAGTAGCACACACTTTTTGTACCACTGGTCCTTAGAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTACCTCTCCATTTCCTTaGCAACAAAAATCATCTCAT +
Preference number: 4 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPTSPFP*QQKSSH
Trigger: ATGAGATGATTTTTGTTGCCAAGGAAATGGAGAGGT...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCGAACACACCATGCATTaGTTCTCGAATGGCTTCCAT +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIEHTMH*FSNGFH
Trigger: ATGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTC...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCAACAAAGTTGGTGTATaGTCCAATCCTGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDINKVGV*SNPEGL
Trigger: GAGCCCTTCAGGATTGGACCATACACCAACTTTGTT...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTTTTCCACCTGTGCTTTaGCAATGCTCAGGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSFPPVL*QCSGLL
Trigger: AAGAAGCCCTGAGCATTGCCAAAGCACAGGTGGAAA...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATTGGAGTTGCAAAATCTaGTCATTGCACTGGGACCAT +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHWSCKI*SLHWDH
Trigger: ATGGTCCCAGTGCAATGACCAGATTTTGCAACTCCA...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCATTTGGCCTTTACGTTaGAGAAGTACAGCCCTGACA +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIIWPLR*RSTALT
Trigger: TGTCAGGGCTGTACTTCTCCAACGTAAAGGCCAAAT...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR TCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTTGGAGTGATGAGTCCTaGCAAGCCAATTATATCTGC +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSWSDES*QANYIC
Trigger: GCAGATATAATTGGCTTGTCAGGACTCATCACTCCA...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCTCACAGACACCAGAATaGAAAGGAGCAATGAAGTCT +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDISQTPE*KGAMKS
Trigger: AGACTTCATTGCTCCTTTGCATTCTGGTGTCTGTGA...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTTGTGGGTTCTTGAAGTaGTTGCTCCTCCTATCAACA +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSCGFLK*LLLLST
Trigger: TGTTGATAGGAGGAGCAACCACTTCAAGAACCCACA...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
3UTR CAA 72 bp AAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTaGCTGAAACCACTTAGACTGAAATGTCACATTTCT +
Preference number: 4 (lower is better)
Translates to: KRKEYFSPCPGP*LKPLRLKCHIS
Trigger: AGAAATGTGACATTTCAGTCTAAGTGGTTTCAGCAAAGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR GCA 90 bp CCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGATATCCAATGTGCTTTTCAATaGCCTTCACAAGAGCATACT +
Preference number: 4 (lower is better)
Translates to: PLLPSVAVVHSILLHHDIQCAFQ*PSQEHT
Trigger: AGTATGCTCTTGTGAAGGGCATTGAAAAGCACATTG...GATATCATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATAGGAGAAGGATAAGTTaGAAAGACCTCCACTTATTC +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHRRRIS*KDLHLF
Trigger: GAATAAGTGGAGGTCTTTCCAACTTATCCTTCTCCT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATTTTCCCCGTTTAACCTaGCTTCTTCAGTATCTTCAA +
Preference number: 4 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHFPRLT*LLQYLQ
Trigger: TTGAAGATACTGAAGAAGCCAGGTTAAACGGGGAAA...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CCA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTATTTTAACTGCTGTGTaGGTTCTTGAAGTGGTTGCT +
Preference number: 4 (lower is better)
Translates to: ERSGIYITFNASIYCPSSILTAV*VLEVVA
Trigger: AGCAACCACTTCAAGAACCCACACAGCAGTTAAAAT...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 90 bp TCTCAGTATGGTCAGGCTGGCTGGGGTAACCAGGAGCTGGCCGGATaGCCTCATACCGGAGTCTGCGCAAGTCTGGGACGCCCAACTGCT +
Preference number: 5 (lower is better)
Translates to: SQYGQAGWGNQELAG*PHTGVCASLGRPTA
Trigger: AGCAGTTGGGCGTCCCAGACTTGCGCAGACTCCGGTATGAGGGCATCCGGCCAGCTCCTGGTTACCCCAGCCAGCCTGACCATACTGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 90 bp GGTAAGCTTCTCAGTATGGTCAGGCTGGCTGGGGTAACCAGGAGCTaGCCGGATGCCCTCATACCGGAGTCTGCGCAAGTCTGGGACGCC +
Preference number: 5 (lower is better)
Translates to: GKLLSMVRLAGVTRS*PDALIPESAQVWDA
Trigger: GGCGTCCCAGACTTGCGCAGACTCCGGTATGAGGGCATCCGGCCAGCTCCTGGTTACCCCAGCCAGCCTGACCATACTGAGAAGCTTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 90 bp GCTATGGGCTCAGCGGCCTGGGGCACCACCCCCTCTGCATACAGGTaGATGTCATCCTGGACACTCTGTGCTGGCCAGAATCCAACCACA +
Preference number: 5 (lower is better)
Translates to: AMGSAAWGTTPSAYR*MSSWTLCAGQNPTT
Trigger: TGTGGTTGGATTCTGGCCAGCACAGAGTGTCCAGGATGACATCCACCTGTATGCAGAGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 90 bp AAGAGTCCTTCTCAGCCTGCTGCCTCAGTCCATAGAAGGTGGCTATaGGCTCAGCGGCCTGGGGCACCACCCCCTCTGCATACAGGTGGA +
Preference number: 5 (lower is better)
Translates to: KSPSQPAASVHRRWL*AQRPGAPPPLHTGG
Trigger: TCCACCTGTATGCAGAGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGCCACCTTCTATGGACTGAGGCAGCAGGCTGAGAAGGACTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GCAGTGTGGGGAAGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAACCTCGGTTCGGGTACTaGCCCCGGAGCTGCCAGACG +
Preference number: 5 (lower is better)
Translates to: AVWGSLSTWLLSHSSYTEPRFGY*PRSCQT
Trigger: CGTCTGGCAGCTCCGGGGCAAGTACCCGAACCGAGG...TTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACTTCCCCACACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 90 bp ATAGAAGGTGGCTATGGGCTCAGCGGCCTGGGGCACCACCCCCTCTaGATACAGGTGGATGTCATCCTGGACACTCTGTGCTGGCCAGAA +
Preference number: 5 (lower is better)
Translates to: IEGGYGLSGLGHHPL*IQVDVILDTLCWPE
Trigger: TTCTGGCCAGCACAGAGTGTCCAGGATGACATCCACCTGTATGCAGAGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGCCACCTTCTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp CCTCTGCAAAGGCCTCTGCCAGCCTGTCGCCCAGCGCCTTCACCATaGTGCTGCTGTAGTCATCGCCATCATCCTCATAGGTCTTACTCA +
Preference number: 5 (lower is better)
Translates to: PLQRPLPACRPAPSP*CCCSHRHHPHRSYS
Trigger: TGAGTAAGACCTATGAGGATGATGGCGATGACTACAGCAGCATCATGGTGAAGGCGCTGGGCGACAGGCTGGCAGAGGCCTTTGCAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCCACACCACCACACTCTaGGATGCATCTAGGACGTGG +
Preference number: 5 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVHTTTL*DASRTW
Trigger: CCACGTCCTAGATGCATCCAAGAGTGTGGTGGTGTG...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp GCTGCACCCAGAGAACAATTTAATCCAATGCACAGGGGGTCCGAATaGGACACGCTGGTGACAAAAGCCTCTCCCGTCTGCCCAGAAAGA +
Preference number: 5 (lower is better)
Translates to: AAPREQFNPMHRGSE*DTLVTKASPVCPER
Trigger: TCTTTCTGGGCAGACGGGAGAGGCTTTTGTCACCAGCGTGTCTCATTCGGACCCCCTGTGCATTGGATTAAATTGTTCTCTGGGTGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGATGGGAAGACCTGCATTaGGGTAACAGAGGACATAGG +
Preference number: 5 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRWEDLH*GNRGHR
Trigger: CCTATGTCCTCTGTTACCCAAATGCAGGTCTTCCCA...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp GTTTGTACCGCTGGATCATGGTCCCCATCCCACCGTCTAGCACCATaGTCCTCTTCCGAAGAATGGCTTCAATCTCATCCTGCAGGGTTT +
Preference number: 5 (lower is better)
Translates to: VCTAGSWSPSHRLAP*SSSEEWLQSHPAGF
Trigger: AAACCCTGCAGGATGAGATTGAAGCCATTCTTCGGAAGAGGATCATGGTGCTAGACGGTGGGATGGGGACCATGATCCAGCGGTACAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS GCA 90 bp TCCTGTCTGCAGAGTTATCTCCTCAGCGGCTTTTCTGGCCACATCTaGAGAGCACTTGTTCATCCGGTAGGCCAAGTGTTCAAGGCCATA +
Preference number: 5 (lower is better)
Translates to: SCLQSYLLSGFSGHI*RALVHPVGQVFKAI
Trigger: TATGGCCTTGAACACTTGGCCTACCGGATGAACAAGTGCTCTGCAGATGTGGCCAGAAAAGCCGCTGAGGAGATAACTCTGCAGACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCCTTAAGATGTCATTGTaGCCTTTCAGTGGCCTGCTG +
Preference number: 5 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVLKMSL*PFSGLL
Trigger: CAGCAGGCCACTGAAAGGCAACAATGACATCTTAAG...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGACCCACAGCAAAATATTaGGCCTTTACGTTGGAGAAG +
Preference number: 5 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRPTAKY*AFTLEK
Trigger: CTTCTCCAACGTAAAGGCCAAATATTTTGCTGTGGG...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp AACAATTTAATCCAATGCACAGGGGGTCCGAATGAGACACGCTGGTaGCAAAAGCCTCTCCCGTCTGCCCAGAAAGAGTCCTTCCACTTT +
Preference number: 5 (lower is better)
Translates to: NNLIQCTGGPNETRW*QKPLPSAQKESFHF
Trigger: AAAGTGGAAGGACTCTTTCTGGGCAGACGGGAGAGGCTTTTGTCACCAGCGTGTCTCATTCGGACCCCCTGTGCATTGGATTAAATTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp TTCCTCCACTCATCTGTCTGGATGACTTTCTTCCCTCCTGTGCCATaGGTCTGGGCATATCGCAAGAGTTTCTCAGTAGCCTCAGAGTCT +
Preference number: 5 (lower is better)
Translates to: FLHSSVWMTFFPPVP*VWAYRKSFSVASES
Trigger: AGACTCTGAGGCTACTGAGAAACTCTTGCGATATGCCCAGACTCATGGCACAGGAGGGAAGAAAGTCATCCAGACAGATGAGTGGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 90 bp GTCATAGCCCAGAATGGGACCAAGCCATTTCTCCACCTCGGCCACTaGCATGTTCTTCCTCAAAGCATAATCCTCAGTCTGATCTTTGGA +
Preference number: 5 (lower is better)
Translates to: VIAQNGTKPFLHLGH*HVLPQSIILSLIFG
Trigger: TCCAAAGATCAGACTGAGGATTATGCTTTGAGGAAGAACATGCCAGTGGCCGAGGTGGAGAAATGGCTTGGTCCCATTCTGGGCTATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp CCTGGAAAAGTGCTTCTTTTCCAGAACCCTAGAGGCCTGCTCTGCATCGCAGTCTGTTCTTCACTTAGTTaGTACCGCTGGATCATGGTC +
Preference number: 5 (lower is better)
Translates to: PGKVLLFQNPRGLLCIAVCSSLS*YRWIMV
Trigger: GACCATGATCCAGCGGTACAAACTAAGTGAAGAACA...GACTGCGATGCAGAGCAGGCCTCTAGGGTTCTGGAAAAGAAGCACTTTTCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCGGAACACACCATGCATaGCTTCTCGAATGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPGTHHA*LLEWLP
Trigger: TGGAAGCCATTCGAGAAGCAATGCATGGTGTGTTCC...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGATTGTCATTAAATATCTaGGGAAATCCTCGGTTCGGG +
Preference number: 5 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRLSLNI*GNPRFG
Trigger: CCCGAACCGAGGATTTCCCAAGATATTTAATGACAA...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp TCCTGCTGGTCCTGTTTTTGTTTTTGGAGAGGCTATGGAACTCAGGATGGCCTGGTAGCCTCAGAGTCTTaGTTCCAGATGAGGTCTTCA +
Preference number: 5 (lower is better)
Translates to: SCWSCFCFWRGYGTQDGLVASES*FQMRSS
Trigger: TGAAGACCTCATCTGGAACAAAGACTCTGAGGCTAC...CAGGCCATCCTGAGTTCCATAGCCTCTCCAAAAACAAAAACAGGACCAGCAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGACGCCAACTATGTTCTaGCCGATGTCATGCACGTCC +
Preference number: 5 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVTPTMF*PMSCTS
Trigger: GGACGTGCATGACATCGGCAAGAACATAGTTGGCGT...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGGGATATCAGTTCCAGTCCGTCTGTCCAGCAAGCAGTGAGCCTCTGCCACAGAAACCTCTCCATTTCCTaGGCAACAAAAATCATCTCA +
Preference number: 5 (lower is better)
Translates to: RDISSSPSVQQAVSLCHRNLSIS*ATKIIS
Trigger: TGAGATGATTTTTGTTGCCAAGGAAATGGAGAGGTT...TCTGTGGCAGAGGCTCACTGCTTGCTGGACAGACGGACTGGAACTGATATCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GTCCATACCAAACTTGATCGCGTGATAAAGGAACACACCATGCATTGCTTCTCGCCAGCCACAAACCTCTaGACTCCAAGTGTTCAAGGC +
Preference number: 5 (lower is better)
Translates to: VHTKLDRVIKEHTMHCFSPATNL*TPSVQG
Trigger: GCCTTGAACACTTGGAGTCAAGAGGTTTGTGGCTGG...CGAGAAGCAATGCATGGTGTGTTCCTTTATCACGCGATCAAGTTTGGTATGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CAA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTTGCAAAATCTGGTCATaGCACTGGGACCATCCAGCA +
Preference number: 5 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSCKIWS*HWDHPA
Trigger: TGCTGGATGGTCCCAGTGCAATGACCAGATTTTGCA...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGTTGAGGCTGATGCTGTaGACTATGCACTTCCCTTGG +
Preference number: 5 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVLRLML*TMHFPW
Trigger: CCAAGGGAAGTGCATAGTCAACAGCATCAGCCTCAA...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGCATCATGCCATTGAGTAGACTCAAGAGACTTGCTTTGCCCCTATTTCCTGTGGTGGTCCAGAGCAGCTaGAAGTATCTTATCACAGGG +
Preference number: 5 (lower is better)
Translates to: SIMPLSRLKRLALPLFPVVVQSS*KYLITG
Trigger: CCCTGTGATAAGATACTTCAAGCTGCTCTGGACCAC...CACAGGAAATAGGGGCAAAGCAAGTCTCTTGAGTCTACTCAATGGCATGATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp CCTTGGCAGCACTTCAACCCAGCTTCAATCACGGCAAAGTTAGAAGAGTCAATGTGTTCTTCACTTAGTTaGTACCGCTGGATCATGGTC +
Preference number: 5 (lower is better)
Translates to: PWQHFNPASITAKLEESMCSSLS*YRWIMV
Trigger: GACCATGATCCAGCGGTACAAACTAAGTGAAGAACA...CATTGACTCTTCTAACTTTGCCGTGATTGAAGCTGGGTTGAAGTGCTGCCAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CAA 90 bp CTGAGAGCAGCAGATGATAATGCCTTTGGGAGTCACTTTCTCTCTTCCATCCCCGCAAACAAGGCTGCTTaGGCATTAGCTGTATCAAAA +
Preference number: 5 (lower is better)
Translates to: LRAADDNAFGSHFLSSIPANKAA*ALAVSK
Trigger: TTTTGATACAGCTAATGCCAAAGCAGCCTTGTTTGC...GGGGATGGAAGAGAGAAAGTGACTCCCAAAGGCATTATCATCTGCTGCTCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GCTCAAAGGAGAAAGTTACCAAGACTACTATCCCTAGGCCCTAGTACCAGCCACCCAATGTTAACAAAGTaGGTGTATGGTCCAATCCTG +
Preference number: 5 (lower is better)
Translates to: AQRRKLPRLLSLGPSTSHPMLTK*VYGPIL
Trigger: CAGGATTGGACCATACACCAACTTTGTTAACATTGG...GTGGCTGGTACTAGGGCCTAGGGATAGTAGTCTTGGTAACTTTCTCCTTTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATTCCCCCTCCCCCTCCTaGAGGCTGATGCTGTTGACT +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHSPSPS*RLMLLT
Trigger: AGTCAACAGCATCAGCCTCAAGGAGGGGGAGGGGGA...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 90 bp CGTTTAACCTGGCTTCTTCAGTATCTTCAACAATGTGCTTTTCAATaGCCTTCACAAGAGCATACTCCAGGCGCTCTTCAATGGAGCCAT +
Preference number: 5 (lower is better)
Translates to: RLTWLLQYLQQCAFQ*PSQEHTPGALQWSH
Trigger: ATGGCTCCATTGAAGAGCGCCTGGAGTATGCTCTTGTGAAGGGCATTGAAAAGCACATTGTTGAAGATACTGAAGAAGCCAGGTTAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp ACCAACTATATTCACCAAGCCATCCACAGCAAAGTCCTTCAGGTGCGTGGCCATGTGATCTTTAAACTCTaGACCTTGGAAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: TNYIHQAIHSKVLQVRGHVIFKL*TLEMFF
Trigger: GAAGAACATTTCCAAGGTCAAGAGTTTAAAGATCAC...ATGGCCACGCACCTGAAGGACTTTGCTGTGGATGGCTTGGTGAATATAGTTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CAA 90 bp CCAATGTTAACAAAGTTGGTGTATGGTCCAATCCTGAAGGGCTCTAGACCAGACGCAAACAAGGCTGCTTaGGCATTAGCTGTATCAAAA +
Preference number: 5 (lower is better)
Translates to: PMLTKLVYGPILKGSRPDANKAA*ALAVSK
Trigger: TTTTGATACAGCTAATGCCAAAGCAGCCTTGTTTGC...GTCTGGTCTAGAGCCCTTCAGGATTGGACCATACACCAACTTTGTTAACATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221290.2
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATGGGAGGTTGCCGGCATaGACTATCCCCATGTCCATA +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHGRLPA*TIPMSI
Trigger: TATGGACATGGGGATAGTCAATGCCGGCAACCTCCC...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATTCATACACAGGGAGGTaGCCGGCATTGACTATCCCC +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHSYTGR*PALTIP
Trigger: GGGGATAGTCAATGCCGGCAACCTCCCTGTGTATGA...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTCAGAAGCAATGGAGTaGCAAAATCTGGTCATTGCA +
Preference number: 5 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPSEAME*QNLVIA
Trigger: TGCAATGACCAGATTTTGCAACTCCATTGCTTCTGA...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTGACTATGCACTTCCCTaGGCAGCACTTCAACCCAGC +
Preference number: 5 (lower is better)
Translates to: ERSGIYITFNASIYCPSSDYALP*AALQPS
Trigger: GCTGGGTTGAAGTGCTGCCAAGGGAAGTGCATAGTC...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGTCTCAGCACTTGGCTCCTGTCACACAGCAGCTACACAGAAAAGTTAAAGTCTAAGGAGAAGGATAAGTaGGAAAGACCTCCACTTATT +
Preference number: 5 (lower is better)
Translates to: SLSTWLLSHSSYTEKLKSKEKDK*ERPPLI
Trigger: AATAAGTGGAGGTCTTTCCAACTTATCCTTCTCCTT...AGACTTTAACTTTTCTGTGTAGCTGCTGTGTGACAGGAGCCAAGTGCTGAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATCAGCACAATGGTGCCTaGGTAAGGGTCCTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHQHNGA*VRVLFF
Trigger: GAAGAAGAGGACCCTTACCAAGGCACCATTGTGCTG...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 90 bp AGTCCTGACAAGCCAATTATATCTGCTTTGTGGTCCAGAGCAGCTTaGAGTATCTTATCACAGGGAGTCATGACTCCTAAATCAATAACT +
Preference number: 5 (lower is better)
Translates to: SPDKPIISALWSRAA*SILSQGVMTPKSIT
Trigger: AGTTATTGATTTAGGAGTCATGACTCCCTGTGATAAGATACTTCAAGCTGCTCTGGACCACAAAGCAGATATAATTGGCTTGTCAGGACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTGTGATCTTTAAACTCTaGACCTTGGAAATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPVIFKL*TLEMFF
Trigger: GAAGAACATTTCCAAGGTCAAGAGTTTAAAGATCAC...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp AGTGAGATGTCACAGGAGAAAAGAAAGGAATACTTTTCTCCCTGTCCAGGTCCTTCTTCACCTACTGCTTaGTCATTAAATATCTTGGGA +
Preference number: 5 (lower is better)
Translates to: SEMSQEKRKEYFSPCPGPSSPTA*SLNILG
Trigger: TCCCAAGATATTTAATGACAAAGCAGTAGGTGAAGA...AGGACCTGGACAGGGAGAAAAGTATTCCTTTCTTTTCTCCTGTGACATCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 90 bp CTGGGCGATACTAGTACTGCTGAAAGTGTTTGTTTCGATGATATCTaGTCCAGCCAGCAAGTATTCCTTATGAATCTGGTAAATAATATC +
Preference number: 5 (lower is better)
Translates to: LGDTSTAESVCFDDI*SSQQVFLMNLVNNI
Trigger: GATATTATTTACCAGATTCATAAGGAATACTTGCTGGCTGGAGCAGATATCATCGAAACAAACACTTTCAGCAGTACTAGTATCGCCCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS GCA 90 bp CATATTCTGAGCATCATTGTATACCTTTCTGGCTTCTTCACCTACTaGTTTGTCATTAAATATCTTGGGAAATCCTCGGTTCGGGTACTT +
Preference number: 5 (lower is better)
Translates to: HILSIIVYLSGFFTY*FVIKYLGKSSVRVL
Trigger: AAGTACCCGAACCGAGGATTTCCCAAGATATTTAATGACAAAGCAGTAGGTGAAGAAGCCAGAAAGGTATACAATGATGCTCAGAATATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATTCAATAACTCTGAAATaGTTACAGGCCAGCACCACG +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHSITLK*LQASTT
Trigger: CGTGGTGCTGGCCTGTAACAATTTCAGAGTTATTGA...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GAAAGATCTGGCATCTATATAACCTTTAATGCTTCTATTTACTGTCCCTCATCTATGATGTCATTTGGATaGAAGCCCACTTTGTCCACA +
Preference number: 5 (lower is better)
Translates to: ERSGIYITFNASIYCPSSMMSFG*KPTLST
Trigger: TGTGGACAAAGTGGGCTTCAATCCAAATGACATCAT...AGATGAGGGACAGTAAATAGAAGCATTAAAGGTTATATAGATGCCAGATCTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS-3UTR CAA 90 bp GATTCACCTTTATTGCCAAGTGTAGCTGTAGTTCACTCAATTTTACTGCATCATAGAGGACATAGGCTGTaGTACATTTTCCAATTGTTT +
Preference number: 5 (lower is better)
Translates to: DSPLLPSVAVVHSILLHHRGHRL*YIFQLF
Trigger: AAACAATTGGAAAATGTACAACAGCCTATGTCCTCT...ATGATGCAGTAAAATTGAGTGAACTACAGCTACACTTGGCAATAAAGGTGAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp GGTCAGGCTGGCTGGGGTAACCAGGAGCTGGCCGGATaGCCTCATACCGGAGTCTGCGCAAGTCTGGGACGC +
Preference number: 6 (lower is better)
Translates to: GQAGWGNQELAG*PHTGVCASLGR
Trigger: GCGTCCCAGACTTGCGCAGACTCCGGTATGAGGGCATCCGGCCAGCTCCTGGTTACCCCAGCCAGCCTGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp GGCTATGGGCTCAGCGGCCTGGGGCACCACCCCCTCTaGATACAGGTGGATGTCATCCTGGACACTCTGTGC +
Preference number: 6 (lower is better)
Translates to: GYGLSGLGHHPL*IQVDVILDTLC
Trigger: GCACAGAGTGTCCAGGATGACATCCACCTGTATGCAGAGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp TCTCAGCCTGCTGCCTCAGTCCATAGAAGGTGGCTATaGGCTCAGCGGCCTGGGGCACCACCCCCTCTGCAT +
Preference number: 6 (lower is better)
Translates to: SQPAASVHRRWL*AQRPGAPPPLH
Trigger: ATGCAGAGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGCCACCTTCTATGGACTGAGGCAGCAGGCTGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp AGTCCTTCTCAGCCTGCTGCCTCAGTCCATAGAAGGTaGCTATGGGCTCAGCGGCCTGGGGCACCACCCCCT +
Preference number: 6 (lower is better)
Translates to: SPSQPAASVHRR*LWAQRPGAPPP
Trigger: AGGGGGTGGTGCCCCAGGCCGCTGAGCCCATAGCCACCTTCTATGGACTGAGGCAGCAGGCTGAGAAGGACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp TGGCCGGATGCCCTCATACCGGAGTCTGCGCAAGTCTaGGACGCCCAACTGCTCACTCCTAGAGTAGGCCCA +
Preference number: 6 (lower is better)
Translates to: WPDALIPESAQV*DAQLLTPRVGP
Trigger: TGGGCCTACTCTAGGAGTGAGCAGTTGGGCGTCCCAGACTTGCGCAGACTCCGGTATGAGGGCATCCGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp CTCAGTATGGTCAGGCTGGCTGGGGTAACCAGGAGCTaGCCGGATGCCCTCATACCGGAGTCTGCGCAAGTC +
Preference number: 6 (lower is better)
Translates to: LSMVRLAGVTRS*PDALIPESAQV
Trigger: GACTTGCGCAGACTCCGGTATGAGGGCATCCGGCCAGCTCCTGGTTACCCCAGCCAGCCTGACCATACTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp CTGAAGCGGGTGCCATTGCCAAGGATTCTGTCAGCCTaGTGCCTGTGGCCTGCTCGATGCTGGCCAGTCTCC +
Preference number: 6 (lower is better)
Translates to: LKRVPLPRILSA*CLWPARCWPVS
Trigger: GGAGACTGGCCAGCATCGAGCAGGCCACAGGCATCAGGCTGACAGAATCCTTGGCAATGGCACCCGCTTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp TCAGCGGCCTGGGGCACCACCCCCTCTGCATACAGGTaGATGTCATCCTGGACACTCTGTGCTGGCCAGAAT +
Preference number: 6 (lower is better)
Translates to: SAAWGTTPSAYR*MSSWTLCAGQN
Trigger: ATTCTGGCCAGCACAGAGTGTCCAGGATGACATCCACCTGTATGCAGAGGGGGTGGTGCCCCAGGCCGCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp AGGCCTCTGCCAGCCTGTCGCCCAGCGCCTTCACCATaGTGCTGCTGTAGTCATCGCCATCATCCTCATAGG +
Preference number: 6 (lower is better)
Translates to: RPLPACRPAPSP*CCCSHRHHPHR
Trigger: CCTATGAGGATGATGGCGATGACTACAGCAGCATCATGGTGAAGGCGCTGGGCGACAGGCTGGCAGAGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp CTCTGCATACAGGTGGATGTCATCCTGGACACTCTGTaGTGGCCAGAATCCAACCACACCCCTGGCCTGCAG +
Preference number: 6 (lower is better)
Translates to: LCIQVDVILDTL*WPESNHTPGLQ
Trigger: CTGCAGGCCAGGGGTGTGGTTGGATTCTGGCCAGCACAGAGTGTCCAGGATGACATCCACCTGTATGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp ATCCAATGCACAGGGGGTCCGAATGAGACACGCTGGTaGCAAAAGCCTCTCCCGTCTGCCCAGAAAGAGTCC +
Preference number: 6 (lower is better)
Translates to: IQCTGGPNETRW*QKPLPSAQKES
Trigger: GGACTCTTTCTGGGCAGACGGGAGAGGCTTTTGTCACCAGCGTGTCTCATTCGGACCCCCTGTGCATTGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS GCA 72 bp GCCAGCACCACGCCAACTATGTTCTTGCCGATGTCATaGACGTCCCCTTTAACAGTGGCCAGCACAATGGTG +
Preference number: 6 (lower is better)
Translates to: ASTTPTMFLPMS*TSPLTVASTMV
Trigger: CACCATTGTGCTGGCCACTGTTAAAGGGGACGTGCATGACATCGGCAAGAACATAGTTGGCGTGGTGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp AAGATGTCGACCCTGCCATCCAGCAGTCCCTTGGCCTaGTCCTGGTATGCGTCAACAAGCTCATCAAATGTG +
Preference number: 6 (lower is better)
Translates to: KMSTLPSSSPLA*SWYASTSSSNV
Trigger: CACATTTGATGAGCTTGTTGACGCATACCAGGAGCAGGCCAAGGGACTGCTGGATGGCAGGGTCGACATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS TCA 72 bp GCTGGATCATGGTCCCCATCCCACCGTCTAGCACCATaGTCCTCTTCCGAAGAATGGCTTCAATCTCATCCT +
Preference number: 6 (lower is better)
Translates to: AGSWSPSHRLAP*SSSEEWLQSHP
Trigger: AGGATGAGATTGAAGCCATTCTTCGGAAGAGGATCATGGTGCTAGACGGTGGGATGGGGACCATGATCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS GCA 72 bp CAGAGTTATCTCCTCAGCGGCTTTTCTGGCCACATCTaGAGAGCACTTGTTCATCCGGTAGGCCAAGTGTTC +
Preference number: 6 (lower is better)
Translates to: QSYLLSGFSGHI*RALVHPVGQVF
Trigger: GAACACTTGGCCTACCGGATGAACAAGTGCTCTGCAGATGTGGCCAGAAAAGCCGCTGAGGAGATAACTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 72 bp TTATTAGTCGGACCCAGAGCTCCAGCCACAAACCTCTaGACTCCTGTCTGCAGAGTTATCTCCTCAGCGGCT +
Preference number: 6 (lower is better)
Translates to: LLVGPRAPATNL*TPVCRVISSAA
Trigger: AGCCGCTGAGGAGATAACTCTGCAGACAGGAGTCAAGAGGTTTGTGGCTGGAGCTCTGGGTCCGACTAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CCA 72 bp CAGAATGGGACCAAGCCATTTCTCCACCTCGGCCACTaGCATGTTCTTCCTCAAAGCATAATCCTCAGTCTG +
Preference number: 6 (lower is better)
Translates to: QNGTKPFLHLGH*HVLPQSIILSL
Trigger: CAGACTGAGGATTATGCTTTGAGGAAGAACATGCCAGTGGCCGAGGTGGAGAAATGGCTTGGTCCCATTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 90 bp GATGTCATGCACGTCCCCTTTAACAGTGGCCAGCACAATGGTGCCTaGGTAAGGGTCCTCTTCTTCAACCGAACCATTAATCAATCTGGC +
Preference number: 6 (lower is better)
Translates to: DVMHVPFNSGQHNGA*VRVLFFNRTINQSG
Trigger: GCCAGATTGATTAATGGTTCGGTTGAAGAAGAGGACCCTTACCAAGGCACCATTGTGCTGGCCACTGTTAAAGGGGACGTGCATGACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp TCATCTGTCTGGATGACTTTCTTCCCTCCTGTGCCATaGGTCTGGGCATATCGCAAGAGTTTCTCAGTAGCC +
Preference number: 6 (lower is better)
Translates to: SSVWMTFFPPVP*VWAYRKSFSVA
Trigger: GGCTACTGAGAAACTCTTGCGATATGCCCAGACTCATGGCACAGGAGGGAAGAAAGTCATCCAGACAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp AAGACCTGGGTCCCAATAAACGTGGGCTTCACTGGATaGGGTTCAGAGAGCCAATCAATGTGGAAACCGTGT +
Preference number: 6 (lower is better)
Translates to: KTWVPINVGFTG*GSESQSMWKPC
Trigger: ACACGGTTTCCACATTGATTGGCTCTCTGAACCTCATCCAGTGAAGCCCACGTTTATTGGGACCCAGGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 72 bp CACGTCCCCTTTAACAGTGGCCAGCACAATGGTGCCTaGGTAAGGGTCCTCTTCTTCAACCGAACCATTAAT +
Preference number: 6 (lower is better)
Translates to: HVPFNSGQHNGA*VRVLFFNRTIN
Trigger: ATTAATGGTTCGGTTGAAGAAGAGGACCCTTACCAAGGCACCATTGTGCTGGCCACTGTTAAAGGGGACGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 90 bp ATAACTCTGAAATTGTTACAGGCCAGCACCACGCCAACTATGTTCTaGCCGATGTCATGCACGTCCCCTTTAACAGTGGCCAGCACAATG +
Preference number: 6 (lower is better)
Translates to: ITLKLLQASTTPTMF*PMSCTSPLTVASTM
Trigger: CATTGTGCTGGCCACTGTTAAAGGGGACGTGCATGACATCGGCAAGAACATAGTTGGCGTGGTGCTGGCCTGTAACAATTTCAGAGTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 90 bp ACTGCTTTGTCATTAAATATCTTGGGAAATCCTCGGTTCGGGTACTaGCCCCGGAGCTGCCAGACGTCAAAGAAAGGCTTCCAGTCAATG +
Preference number: 6 (lower is better)
Translates to: TALSLNILGNPRFGY*PRSCQTSKKGFQSM
Trigger: CATTGACTGGAAGCCTTTCTTTGACGTCTGGCAGCTCCGGGGCAAGTACCCGAACCGAGGATTTCCCAAGATATTTAATGACAAAGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 90 bp TATACCTTTCTGGCTTCTTCACCTACTGCTTTGTCATTAAATATCTaGGGAAATCCTCGGTTCGGGTACTTGCCCCGGAGCTGCCAGACG +
Preference number: 6 (lower is better)
Translates to: YTFLASSPTALSLNI*GNPRFGYLPRSCQT
Trigger: CGTCTGGCAGCTCCGGGGCAAGTACCCGAACCGAGGATTTCCCAAGATATTTAATGACAAAGCAGTAGGTGAAGAAGCCAGAAAGGTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 90 bp CTGTGCTGGCCAGAATCCAACCACACCCCTGGCCTGCAGTTTCTTTaGACTAATCAGTATGTTCAGCATATTCTGAGCATCATTGTATAC +
Preference number: 6 (lower is better)
Translates to: LCWPESNHTPGLQFL*TNQYVQHILSIIVY
Trigger: GTATACAATGATGCTCAGAATATGCTGAACATACTGATTAGTCAAAAGAAACTGCAGGCCAGGGGTGTGGTTGGATTCTGGCCAGCACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 72 bp CCAGAATCCAACCACACCCCTGGCCTGCAGTTTCTTTaGACTAATCAGTATGTTCAGCATATTCTGAGCATC +
Preference number: 6 (lower is better)
Translates to: PESNHTPGLQFL*TNQYVQHILSI
Trigger: GATGCTCAGAATATGCTGAACATACTGATTAGTCAAAAGAAACTGCAGGCCAGGGGTGTGGTTGGATTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp TGGCTTCTTCAGTATCTTCAACAATGTGCTTTTCAATaGCCTTCACAAGAGCATACTCCAGGCGCTCTTCAA +
Preference number: 6 (lower is better)
Translates to: WLLQYLQQCAFQ*PSQEHTPGALQ
Trigger: TTGAAGAGCGCCTGGAGTATGCTCTTGTGAAGGGCATTGAAAAGCACATTGTTGAAGATACTGAAGAAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS TCA 72 bp AAAAATCATCTCATCCAAGGATGGAGTGATGAGTCCTaGCAAGCCAATTATATCTGCTTTGTGGTCCAGAGC +
Preference number: 6 (lower is better)
Translates to: KNHLIQGWSDES*QANYICFVVQS
Trigger: GCTCTGGACCACAAAGCAGATATAATTGGCTTGTCAGGACTCATCACTCCATCCTTGGATGAGATGATTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS CAA 72 bp TCATTGTATACCTTTCTGGCTTCTTCACCTACTGCTTaGTCATTAAATATCTTGGGAAATCCTCGGTTCGGG +
Preference number: 6 (lower is better)
Translates to: SLYTFLASSPTA*SLNILGNPRFG
Trigger: CCCGAACCGAGGATTTCCCAAGATATTTAATGACAAAGCAGTAGGTGAAGAAGCCAGAAAGGTATACAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6
CDS GCA 72 bp ACTAGTACTGCTGAAAGTGTTTGTTTCGATGATATCTaGTCCAGCCAGCAAGTATTCCTTATGAATCTGGTA +
Preference number: 6 (lower is better)
Translates to: TSTAESVCFDDI*SSQQVFLMNLV
Trigger: TACCAGATTCATAAGGAATACTTGCTGGCTGGAGCAGATATCATCGAAACAAACACTTTCAGCAGTACTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099856.6
ENSMUST00000221290.2
CDS GCA 72 bp AGCATCATTGTATACCTTTCTGGCTTCTTCACCTACTaGTTTGTCATTAAATATCTTGGGAAATCCTCGGTT +
Preference number: 6 (lower is better)
Translates to: SIIVYLSGFFTY*FVIKYLGKSSV
Trigger: AACCGAGGATTTCCCAAGATATTTAATGACAAAGCAGTAGGTGAAGAAGCCAGAAAGGTATACAATGATGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099856.6