Pregenerated sensors for MTPN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029840Ensembl transcript IDs: ENSMUST00000031866.9, ENSMUST00000201026.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCAGTTACTGCCTTTCTTCTGCGCCCAGCTGGTTCTGGAAAGGTaGGCTTGTGCACATGGGATATGCAAGTGCTGTGTTAGAACTCAA | + |
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Preference number: 1 (lower is better) Translates to: LQLLPFFCAQLVLER*ACAHGICKCCVRTQ Trigger: TTGAGTTCTAACACAGCACTTGCATATCCCATGTGCACAAGCTCACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CCA 90 bp | TTAGCTTTCACATGCTGCAGTTACTGCCTTTCTTCTGCGCCCAGCTaGTTCTGGAAAGGTGAGCTTGTGCACATGGGATATGCAAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: LAFTCCSYCLSSAPS*FWKGELVHMGYASA Trigger: AGCACTTGCATATCCCATGTGCACAAGCTCACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | ATGACTAGAAGGCTACTTGTTTTAGCTTTCACATGCTGCAGTTACTaGCTTTCTTCTGCGCCCAGCTGGTTCTGGAAAGGTGAGCTTGTG | + |
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Preference number: 1 (lower is better) Translates to: MTRRLLVLAFTCCSY*LSSAPSWFWKGELV Trigger: CACAAGCTCACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCTTCTAGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 90 bp | AGGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTaGTACCTTTGGTGCACTATAAAATCAGCATCCATGGTGGGTTTT | + |
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Preference number: 1 (lower is better) Translates to: RDEVPSVQIQYISPQ*YLWCTIKSASMVGF Trigger: AAAACCCACCATGGATGCTGATTTTATAGTGCACCAAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | GTTGTCACATGTATGCAAAGAATGATTGTTAAGATAAAAACACCATaGAGGTGGGGTGGTACTGGCCCAGCAAGAGTCTATTACCAGCTC | + |
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Preference number: 1 (lower is better) Translates to: VVTCMQRMIVKIKTP*RWGGTGPARVYYQL Trigger: GAGCTGGTAATAGACTCTTGCTGGGCCAGTACCACCCCACCTGCATGGTGTTTTTATCTTAACAATCATTCTTTGCATACATGTGACAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | AAGAAAGAAATGACTAGAAGGCTACTTGTTTTAGCTTTCACATGCTaGAGTTACTGCCTTTCTTCTGCGCCCAGCTGGTTCTGGAAAGGT | + |
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Preference number: 1 (lower is better) Translates to: KKEMTRRLLVLAFTC*SYCLSSAPSWFWKG Trigger: ACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCTTCTAGTCATTTCTTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | GGAAAGAAAGAAATGACTAGAAGGCTACTTGTTTTAGCTTTCACATaGTGCAGTTACTGCCTTTCTTCTGCGCCCAGCTGGTTCTGGAAA | + |
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Preference number: 1 (lower is better) Translates to: GKKEMTRRLLVLAFT*CSYCLSSAPSWFWK Trigger: TTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCTTCTAGTCATTTCTTTCTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 90 bp | TTACCAGCTCAGGAGAACATGGTAACAAGAATGTTTTTGAAGGGATaGGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATA | + |
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Preference number: 1 (lower is better) Translates to: LPAQENMVTRMFLKG*GPICPNTVHLTPVI Trigger: TATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACCATGTTCTCCTGAGCTGGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | CTCAAAACACCCTGTTGCATTATATTGACTCATAGACTGATCATGTaGCTTCCACTTCCTAGCAGAATGTCCAACTCTATAGCTGCTTGG | + |
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Preference number: 1 (lower is better) Translates to: LKTPCCIILTHRLIM*LPLPSRMSNSIAAW Trigger: CCAAGCAGCTATAGAGTTGGACATTCTGCTAGGAAGTGGAAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGGTGTTTTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 90 bp | AATAGTATGCCAAGAGGTGAAAACAAAGGTCTCAAAACACCCTGTTaGATTATATTGACTCATAGACTGATCATGTGCCTTCCACTTCCT | + |
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Preference number: 1 (lower is better) Translates to: NSMPRGENKGLKTPC*IILTHRLIMCLPLP Trigger: AGGAAGTGGAAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGGTGTTTTGAGACCTTTGTTTTCACCTCTTGGCATACTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTGAGCCCCCAGGAGAGTaGATTCTTAAGGCAGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFEPPGE*ILKAEG Trigger: GCCTTCTGCCTTAAGAATGCACTCTCCTGGGGGCTC...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR TCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTCTCAGCACCCTATGTTaGCATAACAGCAGCCACTAC | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFLSTLC*HNSSHY Trigger: GTAGTGGCTGCTGTTATGTCAACATAGGGTGCTGAG...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTCCAGCAATTCAGGAGTaGGCTGCTCCTTACCTTATC | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFPAIQE*AAPYLI Trigger: GATAAGGTAAGGAGCAGCGCACTCCTGAATTGCTGG...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR TCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTTCCATGGTGGGTTTTTaGGAGGCATTCCAAAGAATA | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFSMVGF*EAFQRI Trigger: TATTCTTTGGAATGCCTCTCAAAAACCCACCATGGA...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTCATCACATTCCCCACTaGTCCTCCAAAACATGTTTT | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFHHIPH*SSKTCF Trigger: AAAACATGTTTTGGAGGAGCAGTGGGGAATGTGATG...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTAAGGCTATAGCTAATTaGTTATCTCAGCACCCTATG | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFKAIAN*LSQHPM Trigger: CATAGGGTGCTGAGATAAGCAATTAGCTATAGCCTT...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTAATAGACTGTATTTTTaGTCTCCCTTGGGAATAAGC | + |
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Preference number: 2 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFNRLYF*SPLGIS Trigger: GCTTATTCCCAAGGGAGAGCAAAAATACAGTCTATT...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CAA 90 bp | CCAAGAGGTGAAAACAAAGGTCTCAAAACACCCTGTTGCATTATATaGACTCATAGACTGATCATGTGCCTTCCACTTCCTAGCAGAATG | + |
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Preference number: 2 (lower is better) Translates to: PRGENKGLKTPCCII*THRLIMCLPLPSRM Trigger: CATTCTGCTAGGAAGTGGAAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGGTGTTTTGAGACCTTTGTTTTCACCTCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR TCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACACCTCCCCTGGCAGTCTaGTTTGTTATGAATTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTPPLAV*FVMNFS Trigger: AGAGAAATTCATAACAAATCAGACTGCCAGGGGAGG...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR CCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAAATCAGCATCCATGGTaGGTTTTTGAGAGGCATTCC | + |
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Preference number: 2 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTNQHPW*VFERHS Trigger: GGAATGCCTCTCAAAAACCCACCATGGATGCTGATT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR TCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACACACTCAAATAGCAAATaGAGAAACTCCATAGGTACT | + |
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Preference number: 2 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTHSNSK*RNSIGT Trigger: AGTACCTATGGAGTTTCTTCATTTGCTATTTGAGTG...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR CCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAATTCTAGAGAGATTTTaGTCACTAACCGCTCTTAAC | + |
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Preference number: 2 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTILERF*SLTALN Trigger: GTTAAGAGCGGTTAGTGACCAAAATCTCTCTAGAAT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 72 bp | CTGCCTTTCTTCTGCGCCCAGCTGGTTCTGGAAAGGTaGGCTTGTGCACATGGGATATGCAAGTGCTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: LPFFCAQLVLER*ACAHGICKCCV Trigger: AACACAGCACTTGCATATCCCATGTGCACAAGCTCACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CCA 72 bp | TGCAGTTACTGCCTTTCTTCTGCGCCCAGCTGGTTCTaGAAAGGTGAGCTTGTGCACATGGGATATGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: CSYCLSSAPSWF*KGELVHMGYAS Trigger: ACTTGCATATCCCATGTGCACAAGCTCACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | AGGCTACTTGTTTTAGCTTTCACATGCTGCAGTTACTaGCTTTCTTCTGCGCCCAGCTGGTTCTGGAAAGGT | + |
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Preference number: 3 (lower is better) Translates to: RLLVLAFTCCSY*LSSAPSWFWKG Trigger: ACCTTTCCAGAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | ATGACTAGAAGGCTACTTGTTTTAGCTTTCACATGCTaGAGTTACTGCCTTTCTTCTGCGCCCAGCTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: MTRRLLVLAFTC*SYCLSSAPSWF Trigger: GAACCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCTTCTAGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | GAAATGACTAGAAGGCTACTTGTTTTAGCTTTCACATaGTGCAGTTACTGCCTTTCTTCTGCGCCCAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: EMTRRLLVLAFT*CSYCLSSAPSW Trigger: CCAGCTGGGCGCAGAAGAAAGGCAGTAACTGCAGCATGTGAAAGCTAAAACAAGTAGCCTTCTAGTCATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTGAAAAACAGGCTGGTTaGATCAGGAATCCCAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFEKQAG*IRNPSK Trigger: TTTACTGGGATTCCTGATCAAACCAGCCTGTTTTTC...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTATCCATGGTGGGTTTTaGAGAGGCATTCCAAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFIHGGF*RGIPKN Trigger: ATTCTTTGGAATGCCTCTCAAAAACCCACCATGGAT...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 72 bp | GTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTaGTACCTTTGGTGCACTATAAAATCAGCATCCATG | + |
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Preference number: 3 (lower is better) Translates to: VPSVQIQYISPQ*YLWCTIKSASM Trigger: CATGGATGCTGATTTTATAGTGCACCAAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CCA 72 bp | CAAAGAATGATTGTTAAGATAAAAACACCATGCAGGTaGGGTGGTACTGGCCCAGCAAGAGTCTATTACCAG | + |
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Preference number: 3 (lower is better) Translates to: QRMIVKIKTPCR*GGTGPARVYYQ Trigger: CTGGTAATAGACTCTTGCTGGGCCAGTACCACCCCACCTGCATGGTGTTTTTATCTTAACAATCATTCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR-3UTR CAA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAACCCCAGTGATACCTTaGGTGCACTATAAAATCAGC | + |
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Preference number: 3 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTTPVIP*VHYKIS Trigger: GCTGATTTTATAGTGCACCAAAGGTATCACTGGGGT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 72 bp | CAAACACAACGAAGGCTGGCTCACTCAAATAGCAAATaGAGAAACTCCATAGGTACTAAGACAACTGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: QTQRRLAHSNSK*RNSIGTKTTVL Trigger: GAGAACAGTTGTCTTAGTACCTATGGAGTTTCTTCATTTGCTATTTGAGTGAGCCAGCCTTCGTTGTGTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | CCCTGTTGCATTATATTGACTCATAGACTGATCATGTaGCTTCCACTTCCTAGCAGAATGTCCAACTCTATA | + |
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Preference number: 3 (lower is better) Translates to: PCCIILTHRLIM*LPLPSRMSNSI Trigger: TATAGAGTTGGACATTCTGCTAGGAAGTGGAAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR TCA 72 bp | CATATCGTTAAGGACGTCTGGAAAGGAAGGCAACAGTaGCTGGGGATAAATATGTTGCTAACATGTTATCTA | + |
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Preference number: 3 (lower is better) Translates to: HIVKDVWKGRQQ*LGINMLLTCYL Trigger: TAGATAACATGTTAGCAACATATTTATCCCCAGTCACTGTTGCCTTCCTTTCCAGACGTCCTTAACGATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | CCAAGAGGTGAAAACAAAGGTCTCAAAACACCCTGTTaGATTATATTGACTCATAGACTGATCATGTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: PRGENKGLKTPC*IILTHRLIMCL Trigger: AAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGGTGTTTTGAGACCTTTGTTTTCACCTCTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR GCA 72 bp | TTAAGATTAAGTGTAGGATATCCAACTCTAGTAGGCTaGATTAAAACAGCAGAGCTAGCCAAATATATCAAA | + |
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Preference number: 3 (lower is better) Translates to: LRLSVGYPTLVG*IKTAELAKYIK Trigger: TTTGATATATTTGGCTAGCTCTGCTGTTTTAATGCAGCCTACTAGAGTTGGATATCCTACACTTAATCTTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTGGCGGTCAGTCCATCTaGGCCTTTCACAGTCTTATC | + |
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Preference number: 4 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFGGQSI*AFHSLI Trigger: GATAAGACTGTGAAAGGCCCAGATGGACTGACCGCC...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTGAGAAGAGCTTTGATTaGCTGGTTGTCAGTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFEKSFD*LVVSGF Trigger: GAAGCCACTGACAACCAGGCAATCAAAGCTCTTCTC...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACATTGCCTGGTTGTCAGTaGCTTCAAGGGCGGTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTLPGCQ*LQGRSV Trigger: GACTGACCGCCCTTGAAGCCACTGACAACCAGGCAA...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR TCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAACTGGAGAAGAGCTTTaGTTGCCTGGTTGTCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTTGEEL*LPGCQW Trigger: CCACTGACAACCAGGCAATCAAAGCTCTTCTCCAGT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR GCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTTGGAGCATTAATATCTaGTCCTTTCAGCAGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFWSINI*SFQQQK Trigger: TTTCTGCTGCTGAAAGGAGCAGATATTAATGCTCCA...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR TCA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTAGAAGAGGGGTAATATaGTGTTTATCTGGAGCATTA | + |
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Preference number: 4 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFRRGVI*CLSGAL Trigger: TAATGCTCCAGATAAACATCATATTACCCCTCTTCT...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAAGAGCTTTGATTGCCTaGTTGTCAGTGGCTTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTRALIA*LSVASR Trigger: CCTTGAAGCCACTGACAACCAGGCAATCAAAGCTCT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CAA 72 bp | TGTCCAAATACAGTACATCTCACCCCAGTGATACCTTaGGTGCACTATAAAATCAGCATCCATGGTGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: CPNTVHLTPVIP*VHYKISIHGGF Trigger: AAACCCACCATGGATGCTGATTTTATAGTGCACCAAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR TCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACACTTATCAGCACCCTTTaGCAGAAGCAATTTCACGCA | + |
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Preference number: 4 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTLISTL*QKQFHA Trigger: TGCGTGAAATTGCTTCTGTCAAAGGGTGCTGATAAG...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR GCA 90 bp | GGTAACAAGAATGTTTTTGAAGGGATGAGGTCCCATCTGTCCAAATACAGTACAAAGCTGTCCACAATCTaGAGCATAATGAAGAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GNKNVFEGMRSHLSKYSTKLSTI*SIMKRL Trigger: AAGCCTCTTCATTATGCTGCAGATTGTGGACAGCTT...TGTACTGTATTTGGACAGATGGGACCTCATCCCTTCAAAAACATTCTTGTTACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| 3UTR CAA 72 bp | GAAAACAAAGGTCTCAAAACACCCTGTTGCATTATATaGACTCATAGACTGATCATGTGCCTTCCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ENKGLKTPCCII*THRLIMCLPLP Trigger: AGGAAGTGGAAGGCACATGATCAGTCTATGAGTCAATATAATGCAACAGGGTGTTTTGAGACCTTTGTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTCCCTCTAGTGTCCGGTaGACATCTTCTCCCTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFPSSVR*TSSPLA Trigger: GGCTAAGGGAGAAGATGTCAACCGGACACTAGAGGG...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTGCTTTGATTGCCTGGTaGTCAGTGGCTTCAAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFALIAW*SVASRA Trigger: CGCCCTTGAAGCCACTGACAACCAGGCAATCAAAGC...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTCACTGGAGAAGAGCTTaGATTGCCTGGTTGTCAGTG | + |
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Preference number: 5 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFHWRRA*IAWLSV Trigger: CACTGACAACCAGGCAATCAAAGCTCTTCTCCAGTG...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS-3UTR CAA 90 bp | GGGATGAGGTCCCATCTGTCCAAATACAGTACATCTCACCCCAGTGATACCTTTTCTTATCAGCACCCTTaGACAGAAGCAATTTCACGC | + |
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Preference number: 5 (lower is better) Translates to: GMRSHLSKYSTSHPSDTFSYQHP*TEAISR Trigger: GCGTGAAATTGCTTCTGTCAAAGGGTGCTGATAAGA...AAAGGTATCACTGGGGTGAGATGTACTGTATTTGGACAGATGGGACCTCATCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031866.9 |
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| CDS TCA 72 bp | AATGAAGAGGCTTCCTTCCACCCTCTAGTGTCCGGTTaGCATCTTCTCCCTCATCCAAGTCTCCGTTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: NEEASFHPLVSG*HLLPHPSLRFS Trigger: TGAAAAACGGAGACTTGGATGAGGGAGAAGATGTCAACCGGACACTAGAGGGTGGAAGGAAGCCTCTTCATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201026.2 |
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