RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTNR1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050901

Ensembl transcript IDs: ENSMUST00000057920.7, ENSMUST00000182947.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCAGGTTTGCACTAGTGGTCACTTGAGTTCACCAGTTGTGGGATaGAGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTC +
Preference number: 1 (lower is better)
Translates to: LQVCTSGHLSSPVVG*SVSNCCTMLAATPL
Trigger: GAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACTGCATCCCACAACTGGTGAACTCAAGTGACCACTAGTGCAAACCTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR TCA 90 bp CCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATaGTTTCTGTCTGGGTTAGTTTATCCTTGTGCCTTCAATACTGCA +
Preference number: 1 (lower is better)
Translates to: PCCLWSTQCFHCPAL*FLSGLVYPCAFNTA
Trigger: TGCAGTATTGAAGGCACAAGGATAAACTAACCCAGACAGAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR TCA 90 bp TCTGTCTGGGTTAGTTTATCCTTGTGCCTTCAATACTGCAGATTTTaGTCCTTCAGCATAGGTAATCAAAAGAGATCTCTTAACAGGTCA +
Preference number: 1 (lower is better)
Translates to: SVWVSLSLCLQYCRF*SFSIGNQKRSLNRS
Trigger: TGACCTGTTAAGAGATCTCTTTTGATTACCTATGCTGAAGGATCAAAATCTGCAGTATTGAAGGCACAAGGATAAACTAACCCAGACAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR CAA 90 bp TATCGTGATGCTTCGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTaGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATG +
Preference number: 2 (lower is better)
Translates to: YRDASSSSLVSCSPP*LSVVHTMFPLPGTM
Trigger: CATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACGAAGCATCACGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR GCA 90 bp CTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCTGTCTGGGCAGCAACTCCACTCTaGTCACTTCACAGGTTTGCT +
Preference number: 2 (lower is better)
Translates to: LSVVHTMFPLPGTMISVWAATPL*SLHRFA
Trigger: AGCAAACCTGTGAAGTGAGCAGAGTGGAGTTGCTGC...CCAGACAGAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR GCA 90 bp CGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTGCTGTCTGTGGTCCACACAATCACCAGTTGTGGGATaGAGTGTGAGCAATTGTTGC +
Preference number: 2 (lower is better)
Translates to: RPPVWLVAVLPCCLWSTQSPVVG*SVSNCC
Trigger: GCAACAATTGCTCACACTGCATCCCACAACTGGTGA...TTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR GCA 90 bp CTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCTGTCTGGAGTGTGAGCAATTGTTaGACAATGCTGGCAGCAACT +
Preference number: 2 (lower is better)
Translates to: LSVVHTMFPLPGTMISVWSVSNC*TMLAAT
Trigger: AGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT...CCAGACAGAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR TCA 90 bp TCCCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCCAATACTGCAGATTTTaGTCCTTCAGCATAGGTAAT +
Preference number: 2 (lower is better)
Translates to: SLAVCGPHNVSTARHYDFQYCRF*SFSIGN
Trigger: ATTACCTATGCTGAAGGATCAAAATCTGCAGTATTG...GAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR CAA 90 bp CGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTGCTGTCTGTGGTCCACACAAGCTCACTTCACAGGTTaGCTGCTAGGCCCACTGAGC +
Preference number: 3 (lower is better)
Translates to: RPPVWLVAVLPCCLWSTQAHFTG*LLGPLS
Trigger: GCTCAGTGGGCCTAGCAGCAAACCTGTGAAGTGAGC...TTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR GCA 72 bp CTTCGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTaGTGTCTGTGGTCCACACAATGTTTCCACTGCCCG +
Preference number: 3 (lower is better)
Translates to: LRPPVWLVAVLP*CLWSTQCFHCP
Trigger: CGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR GCA 72 bp AGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTaGTCACTTCACAGGTTTGCTGCTAGGCCCACTGAG +
Preference number: 3 (lower is better)
Translates to: SNCCTMLAATPL*SLHRFAARPTE
Trigger: CTCAGTGGGCCTAGCAGCAAACCTGTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR GCA 72 bp AGTTCACCAGTTGTGGGATGCAGTGTGAGCAATTGTTaGACAATGCTGGCAGCAACTCCACTCTGCTCACTT +
Preference number: 3 (lower is better)
Translates to: SSPVVGCSVSNC*TMLAATPLCSL
Trigger: AAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACTGCATCCCACAACTGGTGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR GCA 72 bp TGCACTAGTGGTCACTTGAGTTCACCAGTTGTGGGATaGAGTGTGAGCAATTGTTGCACAATGCTGGCAGCA +
Preference number: 3 (lower is better)
Translates to: CTSGHLSSPVVG*SVSNCCTMLAA
Trigger: TGCTGCCAGCATTGTGCAACAATTGCTCACACTGCATCCCACAACTGGTGAACTCAAGTGACCACTAGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR-3UTR CAA 90 bp CGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTGCTGTCTGTGGTCCACACAATGGGTTAGTTTATCCTaGTGCCTTCAATACTGCAGA +
Preference number: 3 (lower is better)
Translates to: RPPVWLVAVLPCCLWSTQWVSLS*CLQYCR
Trigger: TCTGCAGTATTGAAGGCACAAGGATAAACTAACCCA...TTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR CCA 72 bp TTAACAGGTCAATGTGGCAGGGAAAATGACTTCTCATaGGTAGGGCTTGACTTCTGCACCAACCAATTGGAA +
Preference number: 3 (lower is better)
Translates to: LTGQCGRENDFS*VGLDFCTNQLE
Trigger: TTCCAATTGGTTGGTGCAGAAGTCAAGCCCTACCCATGAGAAGTCATTTTCCCTGCCACATTGACCTGTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR CCA 72 bp ACAATGTTTCCACTGCCCGGCACTATGATTTCTGTCTaGGTTAGTTTATCCTTGTGCCTTCAATACTGCAGA +
Preference number: 3 (lower is better)
Translates to: TMFPLPGTMISV*VSLSLCLQYCR
Trigger: TCTGCAGTATTGAAGGCACAAGGATAAACTAACCCAGACAGAAATCATAGTGCCGGGCAGTGGAAACATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR GCA 90 bp ATGCTGGCAGCAACTCCACTCTGCTCACTTCACAGGTTTGCTGCTAGGCCCACTGATGGCCACCACAGCTaGCGTGTACTGTGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: MLAATPLCSLHRFAARPTDGHHS*RVLCAG
Trigger: GCCAGCACACAGTACACGGCAGCTGTGGTGGCCATC...AGTGGGCCTAGCAGCAAACCTGTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CCA 90 bp CGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTGCTGTCTGTGGTCCACACAACCATCACAAAGGCACTaGCCTTGCAGTGGGCCTCCC +
Preference number: 4 (lower is better)
Translates to: RPPVWLVAVLPCCLWSTQPSQRH*PCSGPP
Trigger: GGGAGGCCCACTGCAAGGCCAGTGCCTTTGTGATGG...TTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR TCA 90 bp TCCCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCCCATTGCCTCTGGGTTaGTGGCCACTGCAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: SLAVCGPHNVSTARHYDFPLPLG*WPLQGR
Trigger: TCGGCCTTGCAGTGGCCATCAACCCAGAGGCAATGG...GAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CCA 90 bp CGTCCTCCAGTTTGGTTAGTTGCAGTCCTCCCTTGCTGTCTGTGGTCCACACAAGAGAGCCATTGCCTCTaGGTTGATGGCCACTGCAAG +
Preference number: 4 (lower is better)
Translates to: RPPVWLVAVLPCCLWSTQESHCL*VDGHCK
Trigger: CTTGCAGTGGCCATCAACCCAGAGGCAATGGCTCTC...TTGTGTGGACCACAGACAGCAAGGGAGGACTGCAACTAACCAAACTGGAGGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CCA 90 bp CTCTTAACAGGTCAATGTGGCAGGGAAAATGACTTCTCATGGGTAGGGCTTGACAGCCCTTCTGGGACCTaGAGAGCCATTGCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LLTGQCGRENDFSWVGLDSPSGT*RAIASG
Trigger: CCCAGAGGCAATGGCTCTCCAGGTCCCAGAAGGGCT...GTCAAGCCCTACCCATGAGAAGTCATTTTCCCTGCCACATTGACCTGTTAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR GCA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACGAGTATACCAGTGACTaGAGACCCGGTGGTAGGTGG +
Preference number: 4 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHEYTSD*RPGGRW
Trigger: CCACCTACCACCGGGTCTGCAGTCACTGGTATACTC...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CCA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACGACAAAGAGCCCTTCTaGGACCTGGAGAGCCATTGC +
Preference number: 4 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHDKEPF*DLESHC
Trigger: GCAATGGCTCTCCAGGTCCCAGAAGGGCTCTTTGTC...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR TCA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACTGCTGGCTGTCTGGATaGAGGTGCAGGAATAGATGC +
Preference number: 4 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHCWLSG*RCRNRC
Trigger: GCATCTATTCCTGCACCTTCATCCAGACAGCCAGCA...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR GCA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACTGGGTTGATGGCCACTaGAAGGCCGATACAGTTGAG +
Preference number: 4 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHWVDGH*KADTVE
Trigger: CTCAACTGTATCGGCCTTGCAGTGGCCATCAACCCA...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR CAA 72 bp GAGTTCACCAGTTGTGGGATGCAGTGTGAGCAATTGTaGCACAATGCTGGCAGCAACTCCACTCTGCTCACT +
Preference number: 4 (lower is better)
Translates to: EFTSCGMQCEQL*HNAGSNSTLLT
Trigger: AGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACTGCATCCCACAACTGGTGAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
3UTR CAA 72 bp TTCTCATGGGTAGGGCTTGACTTCTGCACCAACCAATaGGAATCCAGTGCCCAATCTGCCACTAGGAGTTGT +
Preference number: 4 (lower is better)
Translates to: FSWVGLDFCTNQ*ESSAQSATRSC
Trigger: ACAACTCCTAGTGGCAGATTGGGCACTGGATTCCAATTGGTTGGTGCAGAAGTCAAGCCCTACCCATGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR GCA 90 bp TCCCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCAGGTGCAGGAATAGATaGGTGGATCATACTCTAAAG +
Preference number: 4 (lower is better)
Translates to: SLAVCGPHNVSTARHYDFRCRNR*VDHTLK
Trigger: CTTTAGAGTATGATCCACGCATCTATTCCTGCACCT...GAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR GCA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACACATGGTTAGGAAACTaGGCAAATCACTCGGTCTCA +
Preference number: 4 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHTWLGN*ANHSVS
Trigger: TGAGACCGAGTGATTTGCGCAGTTTCCTAACCATGT...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS TCA 90 bp AGCCACCCAGGGGGCCCGGGCAGTCACAGGGGGCCTGGCTCCGGCTaGCCCAGACCAACTAGGGCGCGCTGCCAGCCCGCTGGCCTCACA +
Preference number: 5 (lower is better)
Translates to: SHPGGPGSHRGPGSG*PRPTRARCQPAGLT
Trigger: TGTGAGGCCAGCGGGCTGGCAGCGCGCCCTAGTTGGTCTGGGTCAGCCGGAGCCAGGCCCCCTGTGACTGCCCGGGCCCCCTGGGTGGCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CCA 90 bp AACTGCGCAAATCACTCGGTCTCAGACGCAGCTTCCTCTCAGCCTTaGCCTTCCTTCGGGCCTGGAGCACCAGTACCCAGATTCGCAGGT +
Preference number: 5 (lower is better)
Translates to: NCANHSVSDAASSQP*PSFGPGAPVPRFAG
Trigger: ACCTGCGAATCTGGGTACTGGTGCTCCAGGCCCGAAGGAAGGCCAAGGCTGAGAGGAAGCTGCGTCTGAGACCGAGTGATTTGCGCAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp ATGCTGGCAGCAACTCCACTCTGCTCACTTCACAGGTTTGCTGCTAGGCCCACTGCCATTGCCTCTGGGTaGATGGCCACTGCAAGGCCG +
Preference number: 5 (lower is better)
Translates to: MLAATPLCSLHRFAARPTAIASG*MATARP
Trigger: CGGCCTTGCAGTGGCCATCAACCCAGAGGCAATGGC...AGTGGGCCTAGCAGCAAACCTGTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS GCA 90 bp GAAGTAACTGGTGACAAAGAGCCCTTCTGGGACCTGGAGAGCCATTaGCTCTGGGTTGATGGCCACTGCAAGGCCGATACAGTTGAGGGG +
Preference number: 5 (lower is better)
Translates to: EVTGDKEPFWDLESH*LWVDGHCKADTVEG
Trigger: CCCCTCAACTGTATCGGCCTTGCAGTGGCCATCAACCCAGAGGCAATGGCTCTCCAGGTCCCAGAAGGGCTCTTTGTCACCAGTTACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp TCCCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCCCTGCGTTCCGCAGCTaGCGGTTCCTGAGCACTGAG +
Preference number: 5 (lower is better)
Translates to: SLAVCGPHNVSTARHYDFPAFRS*RFLSTE
Trigger: CTCAGTGCTCAGGAACCGCAAGCTGCGGAACGCAGG...GAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp AGTGTGAGCAATTGTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACGCCAAAAGGATCCTCTaGTACTCCCTGCGGAAGTTC +
Preference number: 5 (lower is better)
Translates to: SVSNCCTMLAATPLCSLHAKRIL*YSLRKF
Trigger: GAACTTCCGCAGGGAGTACAAGAGGATCCTTTTGGC...GTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAACAATTGCTCACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp GTTGCACAATGCTGGCAGCAACTCCACTCTGCTCACTTCACAGGTTTGCTGCTAGCAATGGCTGTGATGTaGAAGACAGAGCCAATGACA +
Preference number: 5 (lower is better)
Translates to: VAQCWQQLHSAHFTGLLLAMAVM*KTEPMT
Trigger: TGTCATTGGCTCTGTCTTCAACATCACAGCCATTGC...TAGCAGCAAACCTGTGAAGTGAGCAGAGTGGAGTTGCTGCCAGCATTGTGCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp CTCTTAACAGGTCAATGTGGCAGGGAAAATGACTTCTCATGGGTAGGGCTTGACGACCCCACAAAGAAATaGGGCACCAAAGCCACCAGA +
Preference number: 5 (lower is better)
Translates to: LLTGQCGRENDFSWVGLDDPTKK*GTKATR
Trigger: TCTGGTGGCTTTGGTGCCCAATTTCTTTGTGGGGTC...GTCAAGCCCTACCCATGAGAAGTCATTTTCCCTGCCACATTGACCTGTTAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS GCA 90 bp AGCATATGGCAAAAACCACAAACACTGCAAACATGGTTAGGAAACTaGGCAAATCACTCGGTCTCAGACGCAGCTTCCTCTCAGCCTTGG +
Preference number: 5 (lower is better)
Translates to: SIWQKPQTLQTWLGN*ANHSVSDAASSQPW
Trigger: CCAAGGCTGAGAGGAAGCTGCGTCTGAGACCGAGTGATTTGCGCAGTTTCCTAACCATGTTTGCAGTGTTTGTGGTTTTTGCCATATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS-3UTR CAA 90 bp TCCCTTGCTGTCTGTGGTCCACACAATGTTTCCACTGCCCGGCACTATGATTTCTCAGTAAGACAGTGTTaGGAAGCATGCTGTATGCAG +
Preference number: 5 (lower is better)
Translates to: SLAVCGPHNVSTARHYDFSVRQC*EACCMQ
Trigger: CTGCATACAGCATGCTTCCAAACACTGTCTTACTGA...GAAATCATAGTGCCGGGCAGTGGAAACATTGTGTGGACCACAGACAGCAAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182947.2
CDS TCA 72 bp GGGGGCCCGGGCAGTCACAGGGGGCCTGGCTCCGGCTaGCCCAGACCAACTAGGGCGCGCTGCCAGCCCGCT +
Preference number: 6 (lower is better)
Translates to: GGPGSHRGPGSG*PRPTRARCQPA
Trigger: AGCGGGCTGGCAGCGCGCCCTAGTTGGTCTGGGTCAGCCGGAGCCAGGCCCCCTGTGACTGCCCGGGCCCCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CCA 72 bp ACCTTCCTTGACAGGCACGGTAGCCCTGGCAGCAGGTaGCGTCGGGCCCTGTCGCTCCTCAGTAAGACAGTG +
Preference number: 6 (lower is better)
Translates to: TFLDRHGSPGSR*RRALSLLSKTV
Trigger: CACTGTCTTACTGAGGAGCGACAGGGCCCGACGCCACCTGCTGCCAGGGCTACCGTGCCTGTCAAGGAAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CCA 72 bp AATCACTCGGTCTCAGACGCAGCTTCCTCTCAGCCTTaGCCTTCCTTCGGGCCTGGAGCACCAGTACCCAGA +
Preference number: 6 (lower is better)
Translates to: NHSVSDAASSQP*PSFGPGAPVPR
Trigger: TCTGGGTACTGGTGCTCCAGGCCCGAAGGAAGGCCAAGGCTGAGAGGAAGCTGCGTCTGAGACCGAGTGATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CAA 72 bp AAATCACTCGGTCTCAGACGCAGCTTCCTCTCAGCCTaGGCCTTCCTTCGGGCCTGGAGCACCAGTACCCAG +
Preference number: 6 (lower is better)
Translates to: KSLGLRRSFLSA*AFLRAWSTSTQ
Trigger: CTGGGTACTGGTGCTCCAGGCCCGAAGGAAGGCCAAGGCTGAGAGGAAGCTGCGTCTGAGACCGAGTGATTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CAA 90 bp AAACTGCGCAAATCACTCGGTCTCAGACGCAGCTTCCTCTCAGCCTaGGCCTTCCTTCGGGCCTGGAGCACCAGTACCCAGATTCGCAGG +
Preference number: 6 (lower is better)
Translates to: KLRKSLGLRRSFLSA*AFLRAWSTSTQIRR
Trigger: CCTGCGAATCTGGGTACTGGTGCTCCAGGCCCGAAGGAAGGCCAAGGCTGAGAGGAAGCTGCGTCTGAGACCGAGTGATTTGCGCAGTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS GCA 72 bp GGTGACAAAGAGCCCTTCTGGGACCTGGAGAGCCATTaGCTCTGGGTTGATGGCCACTGCAAGGCCGATACA +
Preference number: 6 (lower is better)
Translates to: GDKEPFWDLESH*LWVDGHCKADT
Trigger: TGTATCGGCCTTGCAGTGGCCATCAACCCAGAGGCAATGGCTCTCCAGGTCCCAGAAGGGCTCTTTGTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CAA 72 bp ATGCGTGGATCATACTCTAAAGACCCCACAAAGAAATaGGGCACCAAAGCCACCAGAGTGAGGAGCCAGACG +
Preference number: 6 (lower is better)
Translates to: MRGSYSKDPTKK*GTKATRVRSQT
Trigger: CGTCTGGCTCCTCACTCTGGTGGCTTTGGTGCCCAATTTCTTTGTGGGGTCTTTAGAGTATGATCCACGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2
CDS CCA 72 bp CCCAGCATATGGCAAAAACCACAAACACTGCAAACATaGTTAGGAAACTGCGCAAATCACTCGGTCTCAGAC +
Preference number: 6 (lower is better)
Translates to: PSIWQKPQTLQT*LGNCANHSVSD
Trigger: GTCTGAGACCGAGTGATTTGCGCAGTTTCCTAACCATGTTTGCAGTGTTTGTGGTTTTTGCCATATGCTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057920.7
ENSMUST00000182947.2