RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTMR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031918

Ensembl transcript IDs: ENSMUST00000034396.14, ENSMUST00000134530.2, ENSMUST00000134674.8, ENSMUST00000155679.8, ENSMUST00000156801.8

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTaGAGAACACAGGCTGGACACTACAGGAGAATGAACAGCTGTGCA +
Preference number: 1 (lower is better)
Translates to: PTSRQEHSQQLWVSA*RTQAGHYRRMNSCA
Trigger: TGCACAGCTGTTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR GCA 90 bp GGTTCCACCTTATATAATATCCCACCCAGAGCTCTAGGTGGCGCATaGTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAA +
Preference number: 1 (lower is better)
Translates to: GSTLYNIPPRALGGA*WLLGKGHDWSSFHK
Trigger: TTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGTGGGATATTATATAAGGTGGAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CCA 90 bp TCCACCTTATATAATATCCCACCCAGAGCTCTAGGTGGCGCATGCTaGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAG +
Preference number: 1 (lower is better)
Translates to: STLYNIPPRALGGAC*LLGKGHDWSSFHKE
Trigger: CTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGTGGGATATTATATAAGGTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CCA 90 bp AGGAAAACAGGTGACCTGTCTGCGTCAGCATGGTTCTTATCTCCATaGCCAACTCTTAGTTGGAATCTATGTCCAAAGCTCAGCCATTCT +
Preference number: 1 (lower is better)
Translates to: RKTGDLSASAWFLSP*PTLSWNLCPKLSHS
Trigger: AGAATGGCTGAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCATGGAGATAAGAACCATGCTGACGCAGACAGGTCACCTGTTTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CCA 90 bp AAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATaGCTCTTGTACAGAGTAAAACAGACCCCAGGAGTCAACTGTCCC +
Preference number: 1 (lower is better)
Translates to: KDQVVRSSFVTVHYI*LLYRVKQTPGVNCP
Trigger: GGGACAGTTGACTCCTGGGGTCTGTTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR TCA 90 bp TTAATGTGTTCCAGCCAGTGTGTAGATTCTAAGTTAGACAACCAGTaGGTTTCTTCAATGGTGGGGTACACAATCTCCTTAAGCTTCCGT +
Preference number: 1 (lower is better)
Translates to: LMCSSQCVDSKLDNQ*VSSMVGYTISLSFR
Trigger: ACGGAAGCTTAAGGAGATTGTGTACCCCACCATTGAAGAAACTCACTGGTTGTCTAACTTAGAATCTACACACTGGCTGGAACACATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CCA 90 bp TGTTCGCTGTTACAAAGGAATGTTCCAAATAAACAGCTGTACAAGTaGTCCAGGATGGTAATGAGAAAATACTCATTGAATTCAAATGCG +
Preference number: 1 (lower is better)
Translates to: CSLLQRNVPNKQLYK*SRMVMRKYSLNSNA
Trigger: CGCATTTGAATTCAATGAGTATTTTCTCATTACCATCCTGGACCACTTGTACAGCTGTTTATTTGGAACATTCCTTTGTAACAGCGAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGATCAGGTTCCTGGCAATaGGGCCCTGGGCCTAGTCCT +
Preference number: 2 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRSGSWQ*GPGPSP
Trigger: AGGACTAGGCCCAGGGCCTCATTGCCAGGAACCTGA...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTCAGGTTCCTGGCAATaGGGCCCTGGGCCTAGTCCT +
Preference number: 2 (lower is better)
Translates to: LNACALRCNSRWPCFSPLSGSWQ*GPGPSP
Trigger: AGGACTAGGCCCAGGGCCTCATTGCCAGGAACCTGA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCGCCAGGGAAGTGAGCTaGGCTGTGCGATCCCATCCA +
Preference number: 2 (lower is better)
Translates to: RALGGACWLLGKGHDWSSAREVS*AVRSHP
Trigger: TGGATGGGATCGCACAGCTCAGCTCACTTCCCTGGC...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp CTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATGCATGGCCAGGGAAGTaGGCTGAGCTGTGCGATCCC +
Preference number: 2 (lower is better)
Translates to: LGGACWLLGKGHDWSSFHAWPGK*AELCDP
Trigger: GGGATCGCACAGCTCAGCTCACTTCCCTGGCCATGC...ATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CAA 90 bp CCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTaGCAGAACACAGGCTGGACACTACAGGAGAATGAACAGCTGTGC +
Preference number: 2 (lower is better)
Translates to: PNIQTGTLPTALGLG*QNTGWTLQENEQLC
Trigger: GCACAGCTGTTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR CCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGATTTAATGTTCTCTCCTaGAAGCAGGGCTGGTTCCTC +
Preference number: 2 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRFNVLS*KQGWFL
Trigger: GAGGAACCAGCCCTGCTTCCAGGAGAGAACATTAAA...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGAAGGAATATTTGGATCTaGCACAAGCCTCAATGCGTG +
Preference number: 2 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRRNIWI*HKPQCV
Trigger: CACGCATTGAGGCTTGTGTCAGATCCAAATATTCCT...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGATTTCTACCCATAAGGTaGTGGAATGTCAGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRFLPIR*WNVRFL
Trigger: CAGGAACCTGACATTCCAGCACCTTATGGGTAGAAA...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTCGCACAGCACCAGTaGATGGACATATGTAAGTCA +
Preference number: 2 (lower is better)
Translates to: LNACALRCNSRWPCFSPLLAQHQ*MDICKS
Trigger: TGACTTACATATGTCCATTCACTGGTGCTGTGCGAG...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR GCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTTTCTACCCATAAGGTaGTGGAATGTCAGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPFLPIR*WNVRFL
Trigger: CAGGAACCTGACATTCCAGCACCTTATGGGTAGAAA...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp GCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAGGACTCCAACCATGGGCTaGCTGCAGCGAGTGACTGTG +
Preference number: 2 (lower is better)
Translates to: AHAGYWVKDMIGVASIKRTPTMG*LQRVTV
Trigger: CACAGTCACTCGCTGCAGCCAGCCCATGGTTGGAGT...CCTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp ACAGGTGACCTGTCTGCGTCAGCATGGTTCTTATCTCCATGGCCAACTCTTAGTAGGTGCAACAGCAGGTaGCCTTGCTTTTCTCCCCTC +
Preference number: 2 (lower is better)
Translates to: TGDLSASAWFLSPWPTLSRCNSR*PCFSPL
Trigger: GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCT...ACTAAGAGTTGGCCATGGAGATAAGAACCATGCTGACGCAGACAGGTCACCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCCTGTCTGCGTCAGCATaGTTCTTATCTCCATGGCCA +
Preference number: 2 (lower is better)
Translates to: RALGGACWLLGKGHDWSSLSASA*FLSPWP
Trigger: TGGCCATGGAGATAAGAACCATGCTGACGCAGACAG...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCGGATTCTCCAGTAGATaGGTTTTAAACACGGAAGGT +
Preference number: 2 (lower is better)
Translates to: LNACALRCNSRWPCFSPLGFSSR*VLNTEG
Trigger: ACCTTCCGTGTTTAAAACCCATCTACTGGAGAATCC...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp TGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCGACACTACAGGAGAATaGACAGCTGTGCAGACAAAA +
Preference number: 2 (lower is better)
Translates to: CTFPNIQTGTLPTALGLGDTTGE*TAVQTK
Trigger: TTTTGTCTGCACAGCTGTTCATTCTCCTGTAGTGTC...GCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCAGGTGCAACAGCAGGTaGCCTTGCTTTTCTCCCCTC +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLRCNSR*PCFSPL
Trigger: GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp TGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGCAGAACACAGGCTaGACACTACAGGAGAATGAA +
Preference number: 2 (lower is better)
Translates to: CTFPNIQTGTLPTALGLGLQNTG*TLQENE
Trigger: TTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAA...GCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR GCA 90 bp GCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAGGTTTCTACCCATAAGGTaGTGGAATGTCAGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: AHAGYWVKDMIGVASIKRFLPIR*WNVRFL
Trigger: CAGGAACCTGACATTCCAGCACCTTATGGGTAGAAA...CCTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CAA 90 bp ATGTTCTCTCCTGGAAGCAGGGCTGGTTCCTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACCTATAGAATTGGATTCAACAGGATA +
Preference number: 2 (lower is better)
Translates to: MFSPGSRAGSSISAN*FASLRTYRIGFNRI
Trigger: TATCCTGTTGAATCCAATTCTATAGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGAGGAACCAGCCCTGCTTCCAGGAGAGAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134674.8
ENSMUST00000156801.8
3UTR-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTCCCCTCCTGGAGATCTaGCCAGGTGCTCAGGGTTTT +
Preference number: 2 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSPLLEI*PGAQGF
Trigger: AAAACCCTGAGCACCTGGTCAGATCTCCAGGAGGGG...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCAACTGTCTTGTCATTTaGCAGACACAGTCAATAAAC +
Preference number: 2 (lower is better)
Translates to: RALGGACWLLGKGHDWSSNCLVI*QTQSIN
Trigger: GTTTATTGACTGTGTCTGGCAAATGACAAGACAGTT...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp ACAGGTGACCTGTCTGCGTCAGCATGGTTCTTATCTCCATGGCCAACTCTTAGTGGATTCTCCAGTAGATaGGTTTTAAACACGGAAGGT +
Preference number: 2 (lower is better)
Translates to: TGDLSASAWFLSPWPTLSGFSSR*VLNTEG
Trigger: ACCTTCCGTGTTTAAAACCCATCTACTGGAGAATCC...ACTAAGAGTTGGCCATGGAGATAAGAACCATGCTGACGCAGACAGGTCACCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp GCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAGGAGTGAGTTTCTTCAATaGTGGGGTACACAATCTCCT +
Preference number: 2 (lower is better)
Translates to: AHAGYWVKDMIGVASIKRSEFLQ*WGTQSP
Trigger: AGGAGATTGTGTACCCCACCATTGAAGAAACTCACT...CCTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATTCAGGTTCCTGGCAATaGGGCCCTGGGCCTAGTCCT +
Preference number: 2 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDSGSWQ*GPGPSP
Trigger: AGGACTAGGCCCAGGGCCTCATTGCCAGGAACCTGA...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCCCCCTCCTGGAGATCTaGCCAGGTGCTCAGGGTTTT +
Preference number: 2 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLPLLEI*PGAQGF
Trigger: AAAACCCTGAGCACCTGGTCAGATCTCCAGGAGGGG...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCAGGAATATTTGGATCTaGCACAAGCCTCAATGCGTG +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLRNIWI*HKPQCV
Trigger: CACGCATTGAGGCTTGTGTCAGATCCAAATATTCCT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp AATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTGACACTACAGGAGAATaGACAGCTGTGCAGACAAAA +
Preference number: 2 (lower is better)
Translates to: NLYISQHPDRNTPNSSGSDTTGE*TAVQTK
Trigger: TTTTGTCTGCACAGCTGTTCATTCTCCTGTAGTGTC...AGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR TCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCCGCCCCTCCGGTTTATaGGCAAATCGCAAGTTCCTG +
Preference number: 2 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQARPSGL*ANRKFL
Trigger: CAGGAACTTGCGATTTGCTCATAAACCGGAGGGGCG...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCAAGTTAGACAACCAGTaGGTTTCTTCAATGGTGGGG +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLKLDNQ*VSSMVG
Trigger: CCCCACCATTGAAGAAACTCACTGGTTGTCTAACTT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR GCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAAACAGCAGGTGGCCTTaGTTTTCTCCCCTCCTGGAG +
Preference number: 2 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRNSRWP*FSPLLE
Trigger: CTCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTT...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCGCTTTTCTCCCCTCCTaGAGATCTGACCAGGTGCTC +
Preference number: 2 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAAFLPS*RSDQVL
Trigger: GAGCACCTGGTCAGATCTCCAGGAGGGGAGAAAAGC...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGGGCATTGGAGTCCATaGTGGCCTGAAGGTACTTCT +
Preference number: 2 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRGHWSP*WPEGTS
Trigger: AGAAGTACCTTCAGGCCATCATGGACTCCAATGCCC...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR GCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCAACAGCAGGTGGCCTTaGTTTTCTCCCCTCCTGGAG +
Preference number: 2 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLNSRWP*FSPLLE
Trigger: CTCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCGCTTTTCTCCCCTCCTaGAGATCTGACCAGGTGCTC +
Preference number: 2 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLAFLPS*RSDQVL
Trigger: GAGCACCTGGTCAGATCTCCAGGAGGGGAGAAAAGC...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCTGGCCAACTCTTAGTTaGAATCTATGTCCAAAGCTC +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLWPTLS*NLCPKL
Trigger: GAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCA...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp CCTGCAAGAATGAGCTTAATGTGTTCCAGCCAGTGTGTAGATTCTAAGTTAGACAGGAATATTTGGATCTaGCACAAGCCTCAATGCGTG +
Preference number: 2 (lower is better)
Translates to: PARMSLMCSSQCVDSKLDRNIWI*HKPQCV
Trigger: CACGCATTGAGGCTTGTGTCAGATCCAAATATTCCT...GTCTAACTTAGAATCTACACACTGGCTGGAACACATTAAGCTCATTCTTGCAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR GCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGACTCATCAGGAATGTTTaGTGGCACAACCAAGAGGGC +
Preference number: 2 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRLIRNV*WHNQEG
Trigger: GCCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAG...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR GCA 90 bp TTGTCAGCAATCCTAAGAGCCCCTGCAAGAATGAGCTTAATGTGTTCCAGCCAGCAGAAAAACGAGTTCTaGATTTTGATAGGCATCTTC +
Preference number: 2 (lower is better)
Translates to: LSAILRAPARMSLMCSSQQKNEF*ILIGIF
Trigger: GAAGATGCCTATCAAAATGCAGAACTCGTTTTTCTG...CTGGCTGGAACACATTAAGCTCATTCTTGCAGGGGCTCTTAGGATTGCTGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR TCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCAAAACTTGGGGAAACTaGGAAAGGAATATTTGGATC +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLKTWGN*ERNIWI
Trigger: GATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCATCTTCATTGTCACTTaGACTGCTATGTTTCTAAAC +
Preference number: 2 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLIFIVT*TAMFLN
Trigger: GTTTAGAAACATAGCAGTGCAAGTGACAATGAAGAT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp AATAACATTGAATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGTTGCAGAACACAGGCTaGACACTACAGGAGAATGAA +
Preference number: 2 (lower is better)
Translates to: NNIEFVHFPTSRQEHSQQLQNTG*TLQENE
Trigger: TTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAA...CTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATTCAATGTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR CAA 90 bp AGAGTTCATAGCGTTCATTTATCTTTGTTATTCTCCAGCTTTCATTaGGAATTCCCTGCCTTCTGTACTCTAGAAGGGGGTCATACAGTT +
Preference number: 2 (lower is better)
Translates to: RVHSVHLSLLFSSFH*EFPAFCTLEGGHTV
Trigger: AACTGTATGACCCCCTTCTAGAGTACAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAATAACAAAGATAAATGAACGCTATGAACTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCCACAGCACCAGTGAATaGACATATGTAAGTCACATC +
Preference number: 2 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAHSTSE*TYVSHI
Trigger: GATGTGACTTACATATGTCCATTCACTGGTGCTGTG...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CAA 90 bp AAACTGCTCTTCACGGATTTCAGCAACAATTTAAAGAGAATAACATaGAATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAAC +
Preference number: 2 (lower is better)
Translates to: KLLFTDFSNNLKRIT*NLYISQHPDRNTPN
Trigger: GTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATTCAATGTTATTCTCTTTAAATTGTTGCTGAAATCCGTGAAGAGCAGTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACTTGGGGAAACTaGGAAAGGAATATTTGGATC +
Preference number: 2 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSKTWGN*ERNIWI
Trigger: GATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTCATTGTCACTTGCACTaGTATGTTTCTAAACTCATC +
Preference number: 2 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSHCHLH*YVSKLI
Trigger: GATGAGTTTAGAAACATAGCAGTGCAAGTGACAATG...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCACTGAGACTAACTCATaGAGAGTGCTCTTTGGTAAA +
Preference number: 2 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLTETNS*RVLFGK
Trigger: TTTACCAAAGAGCACTCTGCATGAGTTAGTCTCAGT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAGGATTCTCCAGTAGATaGGTTTTAAACACGGAAGGT +
Preference number: 2 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKGFSSR*VLNTEG
Trigger: ACCTTCCGTGTTTAAAACCCATCTACTGGAGAATCC...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTATCTTCATTGTCACTTaGACTGCTATGTTTCTAAAC +
Preference number: 2 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSIFIVT*TAMFLN
Trigger: GTTTAGAAACATAGCAGTGCAAGTGACAATGAAGAT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCATCTTCATTGTCACTTaGACTGCTATGTTTCTAAAC +
Preference number: 2 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAIFIVT*TAMFLN
Trigger: GTTTAGAAACATAGCAGTGCAAGTGACAATGAAGAT...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR TCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAAAAACTTGGGGAAACTaGGAAAGGAATATTTGGATC +
Preference number: 2 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKKTWGN*ERNIWI
Trigger: GATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTT...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
36% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR GCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACATTGTCACTTGCACTaGTATGTTTCTAAACTCATC +
Preference number: 2 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKHCHLH*YVSKLI
Trigger: GATGAGTTTAGAAACATAGCAGTGCAAGTGACAATG...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR CCA 72 bp TTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTaGGTCTCGGCTTGCAGAACACAGGCTGGACACTAC +
Preference number: 3 (lower is better)
Translates to: FPTSRQEHSQQL*VSACRTQAGHY
Trigger: GTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR TCA 72 bp TATCCATCCAACATGAGCATGGCCAGGGAAGTGAGCTaGGCTGTGCGATCCCATCCATCACTGCAGTGTACC +
Preference number: 3 (lower is better)
Translates to: YPSNMSMAREVS*AVRSHPSLQCT
Trigger: GGTACACTGCAGTGATGGATGGGATCGCACAGCTCAGCTCACTTCCCTGGCCATGCTCATGTTGGATGGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR GCA 72 bp AGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTaGAGAACACAGGCTGGACACTACAGGAGAATGAAC +
Preference number: 3 (lower is better)
Translates to: RQEHSQQLWVSA*RTQAGHYRRMN
Trigger: GTTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR CCA 72 bp CCAACAGCTCTGGGTCTCGGCTTGCAGAACACAGGCTaGACACTACAGGAGAATGAACAGCTGTGCAGACAA +
Preference number: 3 (lower is better)
Translates to: PTALGLGLQNTG*TLQENEQLCRQ
Trigger: TTGTCTGCACAGCTGTTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR-3UTR CAA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCCCTCATCAGGAATGTTaGCTGGCACAACCAAGAGGG +
Preference number: 3 (lower is better)
Translates to: RALGGACWLLGKGHDWSSPHQEC*LAQPRG
Trigger: CCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAGG...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACATCTTCATTGTCACTaGCACTGCTATGTTTCTAAA +
Preference number: 3 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRHLHCH*HCYVSK
Trigger: TTTAGAAACATAGCAGTGCAAGTGACAATGAAGATG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCATGAGATCATCTTCATaGTCACTTGCACTGCTATGT +
Preference number: 3 (lower is better)
Translates to: LNACALRCNSRWPCFSPLMRSSS*SLALLC
Trigger: ACATAGCAGTGCAAGTGACAATGAAGATGATCTCAT...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCCAAATATGGATCTTCTaGTTCGCCCCTCCGGTTTAT +
Preference number: 3 (lower is better)
Translates to: RALGGACWLLGKGHDWSSQIWIF*FAPPVY
Trigger: ATAAACCGGAGGGGCGAACAAGAAGATCCATATTTG...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp CCTGCAAGAATGAGCTTAATGTGTTCCAGCCAGTGTGTAGATTCTAAGTTAGACCAACAGCAGGTGGCCTaGCTTTTCTCCCCTCCTGGA +
Preference number: 3 (lower is better)
Translates to: PARMSLMCSSQCVDSKLDQQQVA*LFSPPG
Trigger: TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTG...GTCTAACTTAGAATCTACACACTGGCTGGAACACATTAAGCTCATTCTTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp GCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAGGGAAGCAAGGCTTTACTaGCTGGCACTGAGACTAACT +
Preference number: 3 (lower is better)
Translates to: AHAGYWVKDMIGVASIKREARLY*LALRLT
Trigger: AGTTAGTCTCAGTGCCAGCAAGTAAAGCCTTGCTTC...CCTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp TTTGTGAGACTGGGCATTGGAGTCCATGATGGCCTGAAGGTACTTCTCATCTTCTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACC +
Preference number: 3 (lower is better)
Translates to: FVRLGIGVHDGLKVLLIFSISAN*FASLRT
Trigger: GGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGA...GAAGATGAGAAGTACCTTCAGGCCATCATGGACTCCAATGCCCAGTCTCACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp TTGTCAGCAATCCTAAGAGCCCCTGCAAGAATGAGCTTAATGTGTTCCAGCCAGTTATTGGCAACCGCATaGACACTTGGCCGAGCATCA +
Preference number: 3 (lower is better)
Translates to: LSAILRAPARMSLMCSSQLLATA*TLGRAS
Trigger: TGATGCTCGGCCAAGTGTCAATGCGGTTGCCAATAA...CTGGCTGGAACACATTAAGCTCATTCTTGCAGGGGCTCTTAGGATTGCTGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR CCA 72 bp GGTGACCTGTCTGCGTCAGCATGGTTCTTATCTCCATaGCCAACTCTTAGTTGGAATCTATGTCCAAAGCTC +
Preference number: 3 (lower is better)
Translates to: GDLSASAWFLSP*PTLSWNLCPKL
Trigger: GAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCATGGAGATAAGAACCATGCTGACGCAGACAGGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp AGAGCTCTAGGTGGCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCATGAGATCATCTTCATaGTCACTTGCACTGCTATGT +
Preference number: 3 (lower is better)
Translates to: RALGGACWLLGKGHDWSSMRSSS*SLALLC
Trigger: ACATAGCAGTGCAAGTGACAATGAAGATGATCTCAT...GCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCCAACAGCAGGTGGCCTaGCTTTTCTCCCCTCCTGGA +
Preference number: 3 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAQQQVA*LFSPPG
Trigger: TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTG...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp GAATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTTTCTGCTAACTTGTTaGCCTCCCTCAGGACCTATA +
Preference number: 3 (lower is better)
Translates to: EFVHFPTSRQEHSQQLWVFLLTC*PPSGPI
Trigger: TATAGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAA...GACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156801.8
3UTR-3UTR CAA 90 bp CCTGCAAGAATGAGCTTAATGTGTTCCAGCCAGTGTGTAGATTCTAAGTTAGACGCGAGTGACTGTGGCTaGACTTTCAGGATGAATCCA +
Preference number: 3 (lower is better)
Translates to: PARMSLMCSSQCVDSKLDASDCG*TFRMNP
Trigger: TGGATTCATCCTGAAAGTCAAGCCACAGTCACTCGC...GTCTAACTTAGAATCTACACACTGGCTGGAACACATTAAGCTCATTCTTGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACAACAGCAGGTGGCCTaGCTTTTCTCCCCTCCTGGA +
Preference number: 3 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKQQQVA*LFSPPG
Trigger: TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTG...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCCATTACATATGGCTCTaGTACAGAGTAAAACAGACC +
Preference number: 3 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLHYIWL*YRVKQT
Trigger: GGTCTGTTTTACTCTGTACAAGAGCCATATGTAATG...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR TCA 72 bp TCCAGCCAGTGTGTAGATTCTAAGTTAGACAACCAGTaGGTTTCTTCAATGGTGGGGTACACAATCTCCTTA +
Preference number: 3 (lower is better)
Translates to: SSQCVDSKLDNQ*VSSMVGYTISL
Trigger: TAAGGAGATTGTGTACCCCACCATTGAAGAAACTCACTGGTTGTCTAACTTAGAATCTACACACTGGCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR GCA 72 bp ATCTTTGTTATTCTCCAGCTTTCATTTGGAATTCCCTaGCTTCTGTACTCTAGAAGGGGGTCATACAGTTTC +
Preference number: 3 (lower is better)
Translates to: IFVILQLSFGIP*LLYSRRGSYSF
Trigger: GAAACTGTATGACCCCCTTCTAGAGTACAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAATAACAAAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACATGCAGAGTGCTCTTaGGTAAAGTGTCCATGTGAG +
Preference number: 3 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKHAECS*VKCPCE
Trigger: CTCACATGGACACTTTACCAAAGAGCACTCTGCATG...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAGAAGCAAGGCTTTACTaGCTGGCACTGAGACTAACT +
Preference number: 3 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKEARLY*LALRLT
Trigger: AGTTAGTCTCAGTGCCAGCAAGTAAAGCCTTGCTTC...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR GCA 72 bp CAGGATGGTAATGAGAAAATACTCATTGAATTCAAATaGGGTAGGGAACTGTCTTGTCATTTGCCAGACACA +
Preference number: 3 (lower is better)
Translates to: QDGNEKILIEFK*GRELSCHLPDT
Trigger: TGTGTCTGGCAAATGACAAGACAGTTCCCTACCGCATTTGAATTCAATGAGTATTTTCTCATTACCATCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAATTTCTGCTAACTTGTTaGCCTCCCTCAGGACCTATA +
Preference number: 3 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKFLLTC*PPSGPI
Trigger: TATAGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAA...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAATTCTCCAGCTTTCATTaGGAATTCCCTGCCTTCTGT +
Preference number: 3 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKFSSFH*EFPAFC
Trigger: ACAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAA...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
3UTR-3UTR CAA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCCATCTTCATTGTCACTaGCACTGCTATGTTTCTAAA +
Preference number: 3 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAHLHCH*HCYVSK
Trigger: TTTAGAAACATAGCAGTGCAAGTGACAATGAAGATG...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR-3UTR CAA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCCATCTTCATTGTCACTaGCACTGCTATGTTTCTAAA +
Preference number: 3 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLHLHCH*HCYVSK
Trigger: TTTAGAAACATAGCAGTGCAAGTGACAATGAAGATG...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGAGCCAGGGAAGTGAGCTaGGCTGTGCGATCCCATCCA +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGAREVS*AVRSHP
Trigger: TGGATGGGATCGCACAGCTCAGCTCACTTCCCTGGC...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGAACCCAGAGCTCTAGGTaGCGCATGCTGGCTACTGGG +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGTQSSR*RMLATG
Trigger: CCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGT...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp CATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGCAGAAGCACTGGACAGTaGGTCCTCGCTGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: HFPTSRQEHSQQLWVSACRSTGQ*VLAGQP
Trigger: AGGCTGCCCAGCGAGGACTCACTGTCCAGTGCTTCT...GCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156801.8
CDS-3UTR GCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGAAGGAGTCACACACTGTaGAGGAGAGCTGGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGRSHTL*RRAGSL
Trigger: GAGAGAGCCAGCTCTCCTGCACAGTGTGTGACTCCT...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
3UTR CAA 72 bp CAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTaGCTTTTCTCCCCTCCTGGAGATCTGACCAGGTGC +
Preference number: 4 (lower is better)
Translates to: QCVCSQVQQQVA*LFSPPGDLTRC
Trigger: GCACCTGGTCAGATCTCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACTCGCACAGCACCAGTaGATGGACATATGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRLAQHQ*MDICKS
Trigger: TGACTTACATATGTCCATTCACTGGTGCTGTGCGAG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCGCGCATGCTGGCTACTaGGTAAAGGACATGATTGGA +
Preference number: 4 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPAHAGY*VKDMIG
Trigger: TCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGACTCGCACAGCACCAGTaGATGGACATATGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGLAQHQ*MDICKS
Trigger: TGACTTACATATGTCCATTCACTGGTGCTGTGCGAG...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGAGAGTCCATGATGGCCTaGAGGTACTTCTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGESMMA*RYFSSS
Trigger: AGAAGATGAGAAGTACCTTCAGGCCATCATGGACTC...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTCATCAGGAATGTTTaGTGGCACAACCAAGAGGGC +
Preference number: 4 (lower is better)
Translates to: LNACALRCNSRWPCFSPLLIRNV*WHNQEG
Trigger: GCCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAG...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
3UTR CAA 72 bp CACCGGACTCGGGTGAGCAGAGAAGCAAGGCTTTACTaGCTGGCACTGAGACTAACTCATGCAGAGTGCTCT +
Preference number: 4 (lower is better)
Translates to: HRTRVSREARLY*LALRLTHAECS
Trigger: AGAGCACTCTGCATGAGTTAGTCTCAGTGCCAGCAAGTAAAGCCTTGCTTCTCTGCTCACCCGAGTCCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
3UTR CAA 72 bp CAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTaGCAGAACACAGGCTGGACACTACAGGAGAATGAA +
Preference number: 4 (lower is better)
Translates to: QTGTLPTALGLG*QNTGWTLQENE
Trigger: TTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
3UTR CAA 72 bp AATGAGGCCCTGGGCCTAGTCCTTTCATACAACAGTTaGGACAGGAGTCACACACTGTGCAGGAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: NEALGLVLSYNS*DRSHTLCRRAG
Trigger: GCCAGCTCTCCTGCACAGTGTGTGACTCCTGTCCAAACTGTTGTATGAAAGGACTAGGCCCAGGGCCTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
CDS-3UTR TCA 90 bp TTTGTGAGACTGGGCATTGGAGTCCATGATGGCCTGAAGGTACTTCTCATCTTCAGAAGCACTGGACAGTaGGTCCTCGCTGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: FVRLGIGVHDGLKVLLIFRSTGQ*VLAGQP
Trigger: AGGCTGCCCAGCGAGGACTCACTGTCCAGTGCTTCT...GAAGATGAGAAGTACCTTCAGGCCATCATGGACTCCAATGCCCAGTCTCACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
CDS-3UTR GCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTCTCATCTTCTTTGCTaGGCTTCCCACTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: LNACALRCNSRWPCFSPLSHLLC*ASHSLQ
Trigger: TTGGAGTGAGTGGGAAGCGCAGCAAAGAAGATGAGA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACACAGCACCAGTGAATaGACATATGTAAGTCACATC +
Preference number: 4 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRHSTSE*TYVSHI
Trigger: GATGTGACTTACATATGTCCATTCACTGGTGCTGTG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACTTCAAATCCTCGTATaGTTCGGTAGTATCCATCCA +
Preference number: 4 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRLQILV*FGSIHP
Trigger: TGGATGGATACTACCGAACCATACGAGGATTTGAAG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCACACAGTCAATAAACTaGAGGAAAACAGGTGACCTG +
Preference number: 4 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPTQSIN*RKTGDL
Trigger: CAGGTCACCTGTTTTCCTTCAGTTTATTGACTGTGT...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGATCCTCTACTTTTCTTTaGAGCTCTGCTCTTTTGGCA +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGSSTFL*SSALLA
Trigger: TGCCAAAAGAGCAGAGCTTCAAAGAAAAGTAGAGGA...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp CCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGCAGAACTCTTGGCTGTCAACTTaGCTATGTCTGGCATCAACT +
Preference number: 4 (lower is better)
Translates to: PNIQTGTLPTALGLGLQNSWLST*LCLAST
Trigger: AGTTGATGCCAGACATAGTCAAGTTGACAGCCAAGA...GTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156801.8
CDS-3UTR GCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCAATCCTAAGAGCCCCTaGAAGAATGAGCTTAATGTG +
Preference number: 4 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPNPKSP*KNELNV
Trigger: CACATTAAGCTCATTCTTGCAGGGGCTCTTAGGATT...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACTCATTGAATTCAAATaGGGTAGGGAACTGTCTTGT +
Preference number: 4 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRLIEFK*GRELSC
Trigger: ACAAGACAGTTCCCTACCGCATTTGAATTCAATGAG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGACACAGCACCAGTGAATaGACATATGTAAGTCACATC +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGHSTSE*TYVSHI
Trigger: GATGTGACTTACATATGTCCATTCACTGGTGCTGTG...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCAGTGAGTTTCTTCAATaGTGGGGTACACAATCTCCT +
Preference number: 4 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPSEFLQ*WGTQSP
Trigger: AGGAGATTGTGTACCCCACCATTGAAGAAACTCACT...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGAGAAGCTCTGCTCTTTTaGCAAGAAGTTCTTTGTATC +
Preference number: 4 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSREALLF*QEVLCI
Trigger: GATACAAAGAACTTCTTGCCAAAAGAGCAGAGCTTC...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGCAGAAATGCACCGAGTTCTCTaGATGAGAAGTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: SQHPDRNTPNSSGSRLAEMHRVL*MRSRST
Trigger: AGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCAT...TTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
CDS-3UTR TCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCACACAGTCAATAAACTaGAGGAAAACAGGTGACCTG +
Preference number: 4 (lower is better)
Translates to: LNACALRCNSRWPCFSPLTQSIN*RKTGDL
Trigger: CAGGTCACCTGTTTTCCTTCAGTTTATTGACTGTGT...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCACTCCAACCATGGGCTaGCTGCAGCGAGTGACTGTG +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLTPTMG*LQRVTV
Trigger: CACAGTCACTCGCTGCAGCCAGCCCATGGTTGGAGT...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTGGCCAACTCTTAGTTaGAATCTATGTCCAAAGCTC +
Preference number: 4 (lower is better)
Translates to: LNACALRCNSRWPCFSPLWPTLS*NLCPKL
Trigger: GAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGATGGTTCTTATCTCCATaGCCAACTCTTAGTTGGAAT +
Preference number: 4 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGWFLSP*PTLSWN
Trigger: ATTCCAACTAAGAGTTGGCCATGGAGATAAGAACCA...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCAGGAGGTTGAGCGGTTaGAAATTTCTCTCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: LNACALRCNSRWPCFSPLRRLSG*KFLSEV
Trigger: AACTTCAGAGAGAAATTTCCAACCGCTCAACCTCCT...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCAACTGTCTTGTCATTTaGCAGACACAGTCAATAAAC +
Preference number: 4 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPNCLVI*QTQSIN
Trigger: GTTTATTGACTGTGTCTGGCAAATGACAAGACAGTT...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
3UTR CAA 72 bp CCTGGAAGCAGGGCTGGTTCCTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACCTATAGAATTGGATTC +
Preference number: 4 (lower is better)
Translates to: PGSRAGSSISAN*FASLRTYRIGF
Trigger: GAATCCAATTCTATAGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGAGGAACCAGCCCTGCTTCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134674.8
ENSMUST00000156801.8
CDS-3UTR TCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCGGGCATTGGAGTCCATaGTGGCCTGAAGGTACTTCT +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLGHWSP*WPEGTS
Trigger: AGAAGTACCTTCAGGCCATCATGGACTCCAATGCCC...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTGCATGGCCAGGGAAGTaGGCTGAGCTGTGCGATCCC +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSAWPGK*AELCDP
Trigger: GGGATCGCACAGCTCAGCTCACTTCCCTGGCCATGC...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAGAAGCACTGGACAGTaGGTCCTCGCTGGGCAGCCT +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSRSTGQ*VLAGQP
Trigger: AGGCTGCCCAGCGAGGACTCACTGTCCAGTGCTTCT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCGCATGGCCAGGGAAGTaGGCTGAGCTGTGCGATCCC +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLAWPGK*AELCDP
Trigger: GGGATCGCACAGCTCAGCTCACTTCCCTGGCCATGC...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAACCCAGAGCTCTAGGTaGCGCATGCTGGCTACTGGG +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRTQSSR*RMLATG
Trigger: CCCAGTAGCCAGCATGCGCCACCTAGAGCTCTGGGT...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTACCGAGTTCTCTGAATaGGAAGTAGAAGCACTGGAC +
Preference number: 4 (lower is better)
Translates to: NLYISQHPDRNTPNSSGSTEFSE*EVEALD
Trigger: GTCCAGTGCTTCTACTTCTCATTCAGAGAACTCGGT...AGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
CDS-3UTR CCA 90 bp TTGCAGAACACAGGCTGGACACTACAGGAGAATGAACAGCTGTGCAGACAAAAATTTAATGTTCTCTCCTaGAAGCAGGGCTGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: LQNTGWTLQENEQLCRQKFNVLS*KQGWFL
Trigger: GAGGAACCAGCCCTGCTTCCAGGAGAGAACATTAAA...TTTTTGTCTGCACAGCTGTTCATTCTCCTGTAGTGTCCAGCCTGTGTTCTGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000134530.2
CDS-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCTTTAATGTTCTCTCCTaGAAGCAGGGCTGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLFNVLS*KQGWFL
Trigger: GAGGAACCAGCCCTGCTTCCAGGAGAGAACATTAAA...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
3UTR CAA 72 bp GAAGCAGGGCTGGTTCCTCCATTTCTGCTAACTTGTTaGCCTCCCTCAGGACCTATAGAATTGGATTCAACA +
Preference number: 4 (lower is better)
Translates to: EAGLVPPFLLTC*PPSGPIELDST
Trigger: TGTTGAATCCAATTCTATAGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGAGGAACCAGCCCTGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134674.8
ENSMUST00000156801.8
CDS-3UTR TCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATGCCAGGGAAGTGAGCTaGGCTGTGCGATCCCATCCA +
Preference number: 4 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDAREVS*AVRSHP
Trigger: TGGATGGGATCGCACAGCTCAGCTCACTTCCCTGGC...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCGCTCTAGGTGGCGCATaGTGGCTACTGGGTAAAGGA +
Preference number: 4 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAALGGA*WLLGKG
Trigger: TCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGC...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTGCTCTAGGTGGCGCATaGTGGCTACTGGGTAAAGGA +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSALGGA*WLLGKG
Trigger: TCCTTTACCCAGTAGCCAGCATGCGCCACCTAGAGC...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAAGGAGTCACACACTGTaGAGGAGAGCTGGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRRSHTL*RRAGSL
Trigger: GAGAGAGCCAGCTCTCCTGCACAGTGTGTGACTCCT...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAACTCCAACCATGGGCTaGCTGCAGCGAGTGACTGTG +
Preference number: 4 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKTPTMG*LQRVTV
Trigger: CACAGTCACTCGCTGCAGCCAGCCCATGGTTGGAGT...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCCTTCAAATCCTCGTATaGTTCGGTAGTATCCATCCA +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLLQILV*FGSIHP
Trigger: TGGATGGATACTACCGAACCATACGAGGATTTGAAG...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTCTAGGTGGCGCATGCTaGCTACTGGGTAAAGGACAT +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSLGGAC*LLGKGH
Trigger: ATGTCCTTTACCCAGTAGCCAGCATGCGCCACCTAG...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCACTGTGCAGGAGAGCTaGCTCTCTCTGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLTVQES*LSLKRR
Trigger: CCTCCTCTTCAGAGAGAGCCAGCTCTCCTGCACAGT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATCGCCCCTCCGGTTTATaGGCAAATCGCAAGTTCCTG +
Preference number: 4 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDRPSGL*ANRKFL
Trigger: CAGGAACTTGCGATTTGCTCATAAACCGGAGGGGCG...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTCTCATCAGGAATGTTTaGTGGCACAACCAAGAGGGC +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSLIRNV*WHNQEG
Trigger: GCCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAG...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGACTGTCTGCGTCAGCATaGTTCTTATCTCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRLSASA*FLSPWP
Trigger: TGGCCATGGAGATAAGAACCATGCTGACGCAGACAG...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCGAAGCTCTGCTCTTTTaGCAAGAAGTTCTTTGTATC +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLEALLF*QEVLCI
Trigger: GATACAAAGAACTTCTTGCCAAAAGAGCAGAGCTTC...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAACTGTGCAGGAGAGCTaGCTCTCTCTGAAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKTVQES*LSLKRR
Trigger: CCTCCTCTTCAGAGAGAGCCAGCTCTCCTGCACAGT...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCTTTTCTTTGAAGCTCTaGTCTTTTGGCAAGAAGTTC +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLFSLKL*SFGKKF
Trigger: GAACTTCTTGCCAAAAGAGCAGAGCTTCAAAGAAAA...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp GGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTCAATGCGTGTGCTCTTAGATTCTCAAATATaGATCTTCTTGTTCGCCCCT +
Preference number: 4 (lower is better)
Translates to: GKLRKEYLDLTQASMRVLLDSQI*IFLFAP
Trigger: AGGGGCGAACAAGAAGATCCATATTTGAGAATCTAA...GAGCACACGCATTGAGGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCCTGTCTGCGTCAGCATaGTTCTTATCTCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLLSASA*FLSPWP
Trigger: TGGCCATGGAGATAAGAACCATGCTGACGCAGACAG...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCGCGCATGCTGGCTACTaGGTAAAGGACATGATTGGA +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLAHAGY*VKDMIG
Trigger: TCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
3UTR CAA 72 bp AGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTaGTACAGAGTAAAACAGACCCCAGGAGTCAACTGT +
Preference number: 4 (lower is better)
Translates to: RSSFVTVHYIWL*YRVKQTPGVNC
Trigger: ACAGTTGACTCCTGGGGTCTGTTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCACCGAGTTCTCTGAATaGGAAGTAGAAGCACTGGAC +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLTEFSE*EVEALD
Trigger: GTCCAGTGCTTCTACTTCTCATTCAGAGAACTCGGT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR TCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAATGCACCGAGTTCTCTaGATGAGAAGTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRMHRVL*MRSRST
Trigger: AGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCAT...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCGAGTCCATGATGGCCTaGAGGTACTTCTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLESMMA*RYFSSS
Trigger: AGAAGATGAGAAGTACCTTCAGGCCATCATGGACTC...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAGTTAGACAACCAGTaGGTTTCTTCAATGGTGGGG +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSKLDNQ*VSSMVG
Trigger: CCCCACCATTGAAGAAACTCACTGGTTGTCTAACTT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCATGCACCGAGTTCTCTaGATGAGAAGTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLMHRVL*MRSRST
Trigger: AGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCAT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR TCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCAAGTTAGACAACCAGTaGGTTTCTTCAATGGTGGGG +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLKLDNQ*VSSMVG
Trigger: CCCCACCATTGAAGAAACTCACTGGTTGTCTAACTT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTTCCTCTACTTTTCTTTaGAGCTCTGCTCTTTTGGCA +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSSSTFL*SSALLA
Trigger: TGCCAAAAGAGCAGAGCTTCAAAGAAAAGTAGAGGA...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATTCTCATCTTCTTTGCTaGGCTTCCCACTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDSHLLC*ASHSLQ
Trigger: TTGGAGTGAGTGGGAAGCGCAGCAAAGAAGATGAGA...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATTTTAATGTTCTCTCCTaGAAGCAGGGCTGGTTCCTC +
Preference number: 4 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDFNVLS*KQGWFL
Trigger: GAGGAACCAGCCCTGCTTCCAGGAGAGAACATTAAA...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAGTGAGTTTCTTCAATaGTGGGGTACACAATCTCCT +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSSEFLQ*WGTQSP
Trigger: AGGAGATTGTGTACCCCACCATTGAAGAAACTCACT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTTGGCCAACTCTTAGTTaGAATCTATGTCCAAAGCTC +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSWPTLS*NLCPKL
Trigger: GAGCTTTGGACATAGATTCCAACTAAGAGTTGGCCA...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAACAGCTGTACAAGTaGTCCAGGATGGTAATGAGA +
Preference number: 4 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSKQLYK*SRMVMR
Trigger: TCTCATTACCATCCTGGACCACTTGTACAGCTGTTT...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAAGGAGGTTGAGCGGTTaGAAATTTCTCTCTGAAGTT +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRRRLSG*KFLSEV
Trigger: AACTTCAGAGAGAAATTTCCAACCGCTCAACCTCCT...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR TCA 90 bp CCAACACAGTGGCTAAATGATGTAATTCAAATAATAAAACTGCTCTTCACGGATATGCACCGAGTTCTCTaGATGAGAAGTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: PTQWLNDVIQIIKLLFTDMHRVL*MRSRST
Trigger: AGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCAT...ATCCGTGAAGAGCAGTTTTATTATTTGAATTACATCATTTAGCCACTGTGTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
CDS-3UTR TCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAATCTTGGCTGTCAACTTaGCTATGTCTGGCATCAACT +
Preference number: 4 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKSWLST*LCLAST
Trigger: AGTTGATGCCAGACATAGTCAAGTTGACAGCCAAGA...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
CDS-3UTR GCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGACTCATTGAATTCAAATaGGGTAGGGAACTGTCTTGT +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRLIEFK*GRELSC
Trigger: ACAAGACAGTTCCCTACCGCATTTGAATTCAATGAG...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCAAACAGCTGTACAAGTaGTCCAGGATGGTAATGAGA +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLKQLYK*SRMVMR
Trigger: TCTCATTACCATCCTGGACCACTTGTACAGCTGTTT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCGGTAAAGGACATGATTaGAGTAGCTTCCATAAAGAG +
Preference number: 4 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAGKGHD*SSFHKE
Trigger: CTCTTTATGGAAGCTACTCCAATCATGTCCTTTACC...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAAATCCTAAGAGCCCCTaGAAGAATGAGCTTAATGTG +
Preference number: 4 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKNPKSP*KNELNV
Trigger: CACATTAAGCTCATTCTTGCAGGGGCTCTTAGGATT...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCAACTGTCTTGTCATTTaGCAGACACAGTCAATAAAC +
Preference number: 4 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQANCLVI*QTQSIN
Trigger: GTTTATTGACTGTGTCTGGCAAATGACAAGACAGTT...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp CAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGATTTTCTTTGAAGCTCTaGTCTTTTGGCAAGAAGTTC +
Preference number: 4 (lower is better)
Translates to: QVVRSSFVTVHYIWLLYRFSLKL*SFGKKF
Trigger: GAACTTCTTGCCAAAAGAGCAGAGCTTCAAAGAAAA...TCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTGGTTCTTATCTCCATaGCCAACTCTTAGTTGGAAT +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLWFLSP*PTLSWN
Trigger: ATTCCAACTAAGAGTTGGCCATGGAGATAAGAACCA...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCGGTAAAGGACATGATTaGAGTAGCTTCCATAAAGAG +
Preference number: 4 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLGKGHD*SSFHKE
Trigger: CTCTTTATGGAAGCTACTCCAATCATGTCCTTTACC...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR GCA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACAGAAAAACGAGTTCTaGATTTTGATAGGCATCTTC +
Preference number: 4 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKQKNEF*ILIGIF
Trigger: GAAGATGCCTATCAAAATGCAGAACTCGTTTTTCTG...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CCA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATTTAGATTCTCAAATATaGATCTTCTTGTTCGCCCCT +
Preference number: 4 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDLDSQI*IFLFAP
Trigger: AGGGGCGAACAAGAAGATCCATATTTGAGAATCTAA...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp AAACAGACCCCAGGAGTCAACTGTCCCCACCAGCACCGGACTCGGGTGAGCAGACCTCATCAGGAATGTTaGCTGGCACAACCAAGAGGG +
Preference number: 5 (lower is better)
Translates to: KQTPGVNCPHQHRTRVSRPHQEC*LAQPRG
Trigger: CCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAGG...TCTGCTCACCCGAGTCCGGTGCTGGTGGGGACAGTTGACTCCTGGGGTCTGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp GCCTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACC +
Preference number: 5 (lower is better)
Translates to: ASMRVLSGATAGGLAFLPSISAN*FASLRT
Trigger: GGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGA...GGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034396.14
CDS-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTTCCCAGACTCGACCTaGTCAGCAATCCTAAGAGCC +
Preference number: 5 (lower is better)
Translates to: LNACALRCNSRWPCFSPLFPDST*SAILRA
Trigger: GGCTCTTAGGATTGCTGACAAGGTCGAGTCTGGGAA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGATTCTCCAGCTTTCATTaGGAATTCCCTGCCTTCTGT +
Preference number: 5 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGFSSFH*EFPAFC
Trigger: ACAGAAGGCAGGGAATTCCAAATGAAAGCTGGAGAA...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCATAGCAGAAGCTGATTaGGTATGCACCGAGTTCTCT +
Preference number: 5 (lower is better)
Translates to: LNACALRCNSRWPCFSPLIAEAD*VCTEFS
Trigger: AGAGAACTCGGTGCATACCAAATCAGCTTCTGCTAT...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR CAA 90 bp CCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGCAGAACATAGCAGAAGCTGATTaGGTATGCACCGAGTTCTCT +
Preference number: 5 (lower is better)
Translates to: PNIQTGTLPTALGLGLQNIAEAD*VCTEFS
Trigger: AGAGAACTCGGTGCATACCAAATCAGCTTCTGCTAT...GTTCTGCAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
CDS-3UTR CAA 90 bp TGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTTCTGCTAACTTGTTaGCCTCCCTCAGGACCCTCA +
Preference number: 5 (lower is better)
Translates to: CTFPNIQTGTLPTALGLGFLLTC*PPSGPS
Trigger: TGAGGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAA...GCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134530.2
CDS-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCAAATATGGATCTTCTaGTTCGCCCCTCCGGTTTAT +
Preference number: 5 (lower is better)
Translates to: LNACALRCNSRWPCFSPLQIWIF*FAPPVY
Trigger: ATAAACCGGAGGGGCGAACAAGAAGATCCATATTTG...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTTGGCAAGAAGTTCTTaGTATCTGCTGTGGATAGGT +
Preference number: 5 (lower is better)
Translates to: LNACALRCNSRWPCFSPLLARSS*YLLWIG
Trigger: ACCTATCCACAGCAGATACAAAGAACTTCTTGCCAA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp CTCAATGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCTTCCTCTACTTTTCTTaGAAGCTCTGCTCTTTTGGC +
Preference number: 5 (lower is better)
Translates to: LNACALRCNSRWPCFSPLFLYFS*KLCSFG
Trigger: GCCAAAAGAGCAGAGCTTCAAAGAAAAGTAGAGGAA...GAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCATTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp ACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGGTCTCGGCTTGATAGCAGAAGCTGATTaGGTATGCACCGAGTTCTCT +
Preference number: 5 (lower is better)
Translates to: TFPNIQTGTLPTALGLGLIAEAD*VCTEFS
Trigger: AGAGAACTCGGTGCATACCAAATCAGCTTCTGCTAT...CAAGCCGAGACCCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134530.2
ENSMUST00000156801.8
CDS-3UTR CAA 90 bp TGCGTGTGCTCTCAGGTGCAACAGCAGGTGGCCTTGCTTTTCTCCCCTCCTGGAATGAGAAAATACTCATaGAATTCAAATGCGGTAGGG +
Preference number: 5 (lower is better)
Translates to: CVCSQVQQQVALLFSPPGMRKYS*NSNAVG
Trigger: CCCTACCGCATTTGAATTCAATGAGTATTTTCTCAT...TCCAGGAGGGGAGAAAAGCAAGGCCACCTGCTGTTGCACCTGAGAGCACACGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS TCA 90 bp GATGATATAGCAGAAGCTGATTTGGTATGCACCGAGTTCTCTGAATaGGAAGTAGAAGCACTGGACAGTGAGTCCTCGCTGGGCAGCCTT +
Preference number: 5 (lower is better)
Translates to: DDIAEADLVCTEFSE*EVEALDSESSLGSL
Trigger: AAGGCTGCCCAGCGAGGACTCACTGTCCAGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCATACCAAATCAGCTTCTGCTATATCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000156801.8
CDS-3UTR CAA 90 bp GCGCATGCTGGCTACTGGGTAAAGGACATGATTGGAGTAGCTTCCATAAAGAGGATAGCAGAAGCTGATTaGGTATGCACCGAGTTCTCT +
Preference number: 5 (lower is better)
Translates to: AHAGYWVKDMIGVASIKRIAEAD*VCTEFS
Trigger: AGAGAACTCGGTGCATACCAAATCAGCTTCTGCTAT...CCTCTTTATGGAAGCTACTCCAATCATGTCCTTTACCCAGTAGCCAGCATGCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134674.8
CDS-3UTR CAA 90 bp ATTGAATTTGTACATTTCCCAACATCCAGACAGGAACACTCCCAACAGCTCTGGTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACC +
Preference number: 5 (lower is better)
Translates to: IEFVHFPTSRQEHSQQLWSISAN*FASLRT
Trigger: GGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGA...CCAGAGCTGTTGGGAGTGTTCCTGTCTGGATGTTGGGAAATGTACAAATTCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134530.2
CDS-3UTR CAA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTTTATTGGCAACCGCATaGACACTTGGCCGAGCATCA +
Preference number: 5 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSLLATA*TLGRAS
Trigger: TGATGCTCGGCCAAGTGTCAATGCGGTTGCCAATAA...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTTCTGCTAACTTGTTaGCCTCCCTCAGGACCCTCA +
Preference number: 5 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLFLLTC*PPSGPS
Trigger: TGAGGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAA...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034396.14
CDS-3UTR CAA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATCCTCATCAGGAATGTTaGCTGGCACAACCAAGAGGG +
Preference number: 5 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDPHQEC*LAQPRG
Trigger: CCCTCTTGGTTGTGCCAGCAAACATTCCTGATGAGG...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAATTCCCAGACTCGACCTaGTCAGCAATCCTAAGAGCC +
Preference number: 5 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKFPDST*SAILRA
Trigger: GGCTCTTAGGATTGCTGACAAGGTCGAGTCTGGGAA...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAGCGAGTGACTGTGGCTaGACTTTCAGGATGAATCCA +
Preference number: 5 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKASDCG*TFRMNP
Trigger: TGGATTCATCCTGAAAGTCAAGCCACAGTCACTCGC...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATGCGAGTGACTGTGGCTaGACTTTCAGGATGAATCCA +
Preference number: 5 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDASDCG*TFRMNP
Trigger: TGGATTCATCCTGAAAGTCAAGCCACAGTCACTCGC...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp ATCATCTTCATTGTCACTTGCACTGCTATGTTTCTAAACTCATCTAAGAGAGATTTATTGGCAACCGCATaGACACTTGGCCGAGCATCA +
Preference number: 5 (lower is better)
Translates to: IIFIVTCTAMFLNSSKRDLLATA*TLGRAS
Trigger: TGATGCTCGGCCAAGTGTCAATGCGGTTGCCAATAA...ATCTCTCTTAGATGAGTTTAGAAACATAGCAGTGCAAGTGACAATGAAGATGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp AGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTTTGGCAAGAAGTTCTTaGTATCTGCTGTGGATAGGT +
Preference number: 5 (lower is better)
Translates to: SGKKLVCYSTLHMALVQSLARSS*YLLWIG
Trigger: ACCTATCCACAGCAGATACAAAGAACTTCTTGCCAA...ACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp ATATCACAAAACTTGGGGAAACTGAGAAAGGAATATTTGGATCTGACACAAGCCTTCCTCTACTTTTCTTaGAAGCTCTGCTCTTTTGGC +
Preference number: 5 (lower is better)
Translates to: ISQNLGKLRKEYLDLTQAFLYFS*KLCSFG
Trigger: GCCAAAAGAGCAGAGCTTCAAAGAAAAGTAGAGGAA...GGCTTGTGTCAGATCCAAATATTCCTTTCTCAGTTTCCCCAAGTTTTGTGATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAACAAATATGGATCTTCTaGTTCGCCCCTCCGGTTTAT +
Preference number: 5 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKQIWIF*FAPPVY
Trigger: ATAAACCGGAGGGGCGAACAAGAAGATCCATATTTG...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS-3UTR CAA 90 bp GTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCTTGTACAGAGTAAAAAAGTCAGGAGAAAAGTaGTCTGCAGAGGTTGAAATG +
Preference number: 5 (lower is better)
Translates to: VRSSFVTVHYIWLLYRVKKSGEK*SAEVEM
Trigger: CATTTCAACCTCTGCAGACAACTTTTCTCCTGACTT...TTTTACTCTGTACAAGAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTAC
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
CDS-3UTR CAA 90 bp TTAAAAGACCAAGTGGTAAGAAGCTCGTTTGTTACAGTACATTACATATGGCTCATGAGAAAATACTCATaGAATTCAAATGCGGTAGGG +
Preference number: 5 (lower is better)
Translates to: LKDQVVRSSFVTVHYIWLMRKYS*NSNAVG
Trigger: CCCTACCGCATTTGAATTCAATGAGTATTTTCTCAT...GAGCCATATGTAATGTACTGTAACAAACGAGCTTCTTACCACTTGGTCTTTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000155679.8
CDS GCA 72 bp AGTGAGTCCTCGCTGGGCAGCCTTGCCGCCGGGAGCTaGGCGCCGAGACTCTCGCAGCTGGAGCTCTTCTCC +
Preference number: 6 (lower is better)
Translates to: SESSLGSLAAGS*APRLSQLELFS
Trigger: GGAGAAGAGCTCCAGCTGCGAGAGTCTCGGCGCGCAGCTCCCGGCGGCAAGGCTGCCCAGCGAGGACTCACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000156801.8
CDS CAA 72 bp CCTGGAAGCAGGGCTGGTTCCTCCATTTCTGCTAACTaGTTTGCCTCCCTCAGGACCCTCAAGTCAGGAGAA +
Preference number: 6 (lower is better)
Translates to: PGSRAGSSISAN*FASLRTLKSGE
Trigger: TTCTCCTGACTTGAGGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGAGGAACCAGCCCTGCTTCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134530.2
CDS CAA 72 bp GAAGCAGGGCTGGTTCCTCCATTTCTGCTAACTTGTTaGCCTCCCTCAGGACCCTCAAGTCAGGAGAAAAGT +
Preference number: 6 (lower is better)
Translates to: EAGLVPPFLLTC*PPSGPSSQEKS
Trigger: ACTTTTCTCCTGACTTGAGGGTCCTGAGGGAGGCAAACAAGTTAGCAGAAATGGAGGAACCAGCCCTGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034396.14
ENSMUST00000134530.2
CDS TCA 72 bp GCAGAAGCTGATTTGGTATGCACCGAGTTCTCTGAATaGGAAGTAGAAGCACTGGACAGTGAGTCCTCGCTG +
Preference number: 6 (lower is better)
Translates to: AEADLVCTEFSE*EVEALDSESSL
Trigger: CAGCGAGGACTCACTGTCCAGTGCTTCTACTTCTCATTCAGAGAACTCGGTGCATACCAAATCAGCTTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034396.14
ENSMUST00000134674.8
ENSMUST00000156801.8