Pregenerated sensors for MTHFSL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079427Ensembl transcript IDs: ENSMUST00000113110.5, ENSMUST00000186863.7
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTCCCGCCCCAGCCGGTTaGCATCTTTGTCAAACCCGA | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVPAPAG*HLCQTR Trigger: TCGGGTTTGACAAAGATGGCAACCGGCTGGGGCGGG...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR TCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTCAATCACCTTCTGCGTaGGGAGGAGAGACTGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVQSPSA*GGETGA Trigger: TGCGCCAGTCTCTCCTCCTCACGCAGAAGGTGATTG...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS-3UTR TCA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTGGCCAGGAAGGAAGATaGGGTCAAGTCCACCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRGQEGR*GQVHQW Trigger: CCACTGGTGGACTTGACCTCATCTTCCTTCCTGGCC...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS-3UTR TCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTGGCCAGGAAGGAAGATaGGGTCAAGTCCACCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVGQEGR*GQVHQW Trigger: CCACTGGTGGACTTGACCTCATCTTCCTTCCTGGCC...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR GCA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTTGGGCAATCACCTTCTaGGTGAGGAGGAGAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRWAITF*VRRRDW Trigger: CCAGTCTCTCCTCCTCACGCAGAAGGTGATTGCCCA...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS-3UTR CCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTGGTCAAGTCCACCAGTaGATAAGGCCTCCTCCCGAA | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVGQVHQ*IRPPPE Trigger: TTCGGGAGGAGGCCTTATCCACTGGTGGACTTGACC...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR GCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTTCTACCTTCATGTCATaGTCATCCACTGGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVSTFMS*SSTGIW Trigger: CCAGATCCCAGTGGATGAGCATGACATGAAGGTAGA...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR CCA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTTCATCCACTGGGATCTaGGGACAGATCTGCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRSSTGI*GQICSL Trigger: TAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGA...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS-3UTR CCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTTCATCCACTGGGATCTaGGGACAGATCTGCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVSSTGI*GQICSL Trigger: TAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGA...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR GCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTCCATGTCCATGTGATTaGTCTGGAATTGGTACTGAG | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVPCPCD*SGIGTE Trigger: CTCAGTACCAATTCCAGAGCAATCACATGGACATGG...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR GCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTATCTGGGGACAGATCTaGTCTTTAAAAGCCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVIWGQI*SLKAKA Trigger: GGCTTTGGCTTTTAAAGAGCAGATCTGTCCCCAGAT...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR TCA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTATTGGTACTGAGGGATaGAGCAGATTTTGCCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRIGTEG*SRFCLV Trigger: AACAAGGCAAAATCTGCTTCATCCCTCAGTACCAAT...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS-3UTR TCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTATTGGTACTGAGGGATaGAGCAGATTTTGCCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVIGTEG*SRFCLV Trigger: AACAAGGCAAAATCTGCTTCATCCCTCAGTACCAAT...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR GCA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTGTCTCAACTTCATCTTaGATGCTCAGAAAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRVSTSS*MLRKME Trigger: TTCCATCTTTCTGAGCATGCAAGATGAAGTTGAGAC...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS GCA 90 bp | AGAGACTGGCGCAGCCGTTCCTCCGCGCTCAAGGCCCTCAAGCGCTaGTTCAGCTCGGCCCGCAGGCCCCGCTTGGCACTGTTTACCGTG | + |
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Preference number: 5 (lower is better) Translates to: RDWRSRSSALKALKR*FSSARRPRLALFTV Trigger: CACGGTAAACAGTGCCAAGCGGGGCCTGCGGGCCGAGCTGAAGCAGCGCTTGAGGGCCTTGAGCGCGGAGGAACGGCTGCGCCAGTCTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS CCA 90 bp | CCCGAACATCTCCCTCACCAGGCTGATGAATATTCCAAGATGTCTTaGGAAGTAAAGCAATTTCTTCAGGTGACGTTAACCTCACCATGT | + |
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Preference number: 5 (lower is better) Translates to: PEHLPHQADEYSKMS*EVKQFLQVTLTSPC Trigger: ACATGGTGAGGTTAACGTCACCTGAAGAAATTGCTTTACTTCCCAAGACATCTTGGAATATTCATCAGCCTGGTGAGGGAGATGTTCGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS CCA 90 bp | ATCTTCATAAAGGACTTCATCTACCTTCATGTCATGCTCATCCACTaGGATCTGGGGACAGATCTGCTCTTTAAAAGCCAAAGCCATGGT | + |
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Preference number: 5 (lower is better) Translates to: IFIKDFIYLHVMLIH*DLGTDLLFKSQSHG Trigger: ACCATGGCTTTGGCTTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGAGCATGACATGAAGGTAGATGAAGTCCTTTATGAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR CAA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTTGTGATTGCTCTGGAATaGGTACTGAGGGATGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: KIYICSLHRDRAVSVAVVVIALE*VLRDEA Trigger: TGCTTCATCCCTCAGTACCAATTCCAGAGCAATCAC...AACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS-3UTR CAA 90 bp | GAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTCTCAACTTCATCTaGCATGCTCAGAAAGATGGA | + |
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Preference number: 5 (lower is better) Translates to: EKNIHMFFTPGQSSKCSRRLNFI*HAQKDG Trigger: TCCATCTTTCTGAGCATGCAAGATGAAGTTGAGACG...ACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS TCA 72 bp | AATTCTGATACTGATTGTGGGCAATCACCTTCTGCGTaGGGAGGAGAGACTGGCGCAGCCGTTCCTCCGCGC | + |
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Preference number: 6 (lower is better) Translates to: NSDTDCGQSPSA*GGETGAAVPPR Trigger: GCGCGGAGGAACGGCTGCGCCAGTCTCTCCTCCTCACGCAGAAGGTGATTGCCCACAATCAGTATCAGAATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113110.5 |
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| CDS TCA 72 bp | TGCCATCTTTGTCAAACCCGAGGCCAGGAAGGAAGATaGGGTCAAGTCCACCAGTGGATAAGGCCTCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: CHLCQTRGQEGR*GQVHQWIRPPP Trigger: GGGAGGAGGCCTTATCCACTGGTGGACTTGACCTCATCTTCCTTCCTGGCCTCGGGTTTGACAAAGATGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS CCA 72 bp | TCATCTACCTTCATGTCATGCTCATCCACTGGGATCTaGGGACAGATCTGCTCTTTAAAAGCCAAAGCCATG | + |
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Preference number: 6 (lower is better) Translates to: SSTFMSCSSTGI*GQICSLKAKAM Trigger: CATGGCTTTGGCTTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGAGCATGACATGAAGGTAGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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| CDS CCA 72 bp | AAGGACTTCATCTACCTTCATGTCATGCTCATCCACTaGGATCTGGGGACAGATCTGCTCTTTAAAAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: KDFIYLHVMLIH*DLGTDLLFKSQ Trigger: TTGGCTTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGAGCATGACATGAAGGTAGATGAAGTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113110.5 ENSMUST00000186863.7 |
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