Pregenerated sensors for MTHFS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066442Ensembl transcript IDs: ENSMUST00000085256.8, ENSMUST00000118870.8, ENSMUST00000185894.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTAAAAACCTGACTACATCTGTGAAACACTaGCATCTGCTGGGCTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: MNRFPQRPIPLPPGKNLTTSVKH*HLLGLE Trigger: CTCCAAGCCCAGCAGATGTCAGTGTTTCACAGATGT...AGTCAGGTTTTTACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGACATTGATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTAACACTGACATCTGCTaGGCTTGGAGAAAGGTATGC | + |
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Preference number: 2 (lower is better) Translates to: CVTLMNRFPQRPIPLPPGNTDIC*AWRKVC Trigger: GCATACCTTTCTCCAAGCCCAGCAGATGTCAGTGTT...ACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCATCAATGTCACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| 3UTR-3UTR GCA 90 bp | ATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTAAAAACCTGACTGCTTGGAGAAAGGTATaGAATTCATCCAACACAGCC | + |
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Preference number: 2 (lower is better) Translates to: MNRFPQRPIPLPPGKNLTAWRKV*NSSNTA Trigger: GGCTGTGTTGGATGAATTGCATACCTTTCTCCAAGC...AGTCAGGTTTTTACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| 3UTR TCA 72 bp | CACAGAGGCCCATTCCCTTACCTCCAGGTAAAAACCTaGCTTGGGTTGTCTCCAGTTGACCCCACTTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: HRGPFPYLQVKT*LGLSPVDPTSV Trigger: CACTGAAGTGGGGTCAACTGGAGACAACCCAAGTCAGGTTTTTACCTGGAGGTAAGGGAATGGGCCTCTGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| 3UTR GCA 72 bp | GGGACACACACATGTGGAGATTGTGGACGAAGGCACTaGTTTAGTCTGTACATCTGTGAAACACTGACATCT | + |
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Preference number: 3 (lower is better) Translates to: GTHTCGDCGRRH*FSLYICETLTS Trigger: AGATGTCAGTGTTTCACAGATGTACAGACTAAAGCAGTGCCTTCGTCCACAATCTCCACATGTGTGTGTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| 3UTR TCA 72 bp | ATGAGGCACTATTTCTTGAACTGGTGGAGAAAGGAATaGAGTTCCTCTAGAACTCCCAGTGAAATTGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: MRHYFLNWWRKE*SSSRTPSEIEQ Trigger: CTGCTCAATTTCACTGGGAGTTCTAGAGGAACTTCATTCCTTTCTCCACCAGTTCAAGAAATAGTGCCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR TCA 90 bp | GACATCTGCTGGGCTTGGAGAAAGGTATGCAATTCATCCAACACAGCCTCGAGAATTGGTACCGAGGGATaGAGCAGATTTTGCCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: DICWAWRKVCNSSNTASRIGTEG*SRFCLV Trigger: AACAAGGCAAAATCTGCTTCATCCCTCGGTACCAAT...TCTCGAGGCTGTGTTGGATGAATTGCATACCTTTCTCCAAGCCCAGCAGATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| CDS-3UTR GCA 90 bp | ATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTAAAAACCTGACTCCATGTCCATGTGATTaGTCTGGAATTGGTACCGAG | + |
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Preference number: 4 (lower is better) Translates to: MNRFPQRPIPLPPGKNLTPCPCD*SGIGTE Trigger: CTCGGTACCAATTCCAGAGCAATCACATGGACATGG...AGTCAGGTTTTTACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| CDS-3UTR TCA 90 bp | AAGAAATATGAGGCACTATTTCTTGAACTGGTGGAGAAAGGAATGAAGTTCCTCGTAGAGGACCAGACTTaGTCCAGAGGCTACAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: KKYEALFLELVEKGMKFLVEDQT*SRGYSC Trigger: GCAACTGTAGCCTCTGGATCAAGTCTGGTCCTCTAC...GAGGAACTTCATTCCTTTCTCCACCAGTTCAAGAAATAGTGCCTCATATTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR GCA 90 bp | TGTGTGACATTGATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTGTCTCAACTTCATCTTaGATGCTTAGAAAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: CVTLMNRFPQRPIPLPPGVSTSS*MLRKME Trigger: TTCCATCTTTCTAAGCATGCAAGATGAAGTTGAGAC...ACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCATCAATGTCACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| CDS-3UTR GCA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTGCCATGTCCATGTGATTaGTCTGGAATTGGTACCGAG | + |
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Preference number: 4 (lower is better) Translates to: KIYICSLHRDRAVSVAVVPCPCD*SGIGTE Trigger: CTCGGTACCAATTCCAGAGCAATCACATGGACATGG...CACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| CDS-3UTR TCA 90 bp | AAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTATTGGTACCGAGGGATaGAGCAGATTTTGCCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: KNIHMFFTPGQSSKCSRRIGTEG*SRFCLV Trigger: AACAAGGCAAAATCTGCTTCATCCCTCGGTACCAAT...ACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| 3UTR CAA 72 bp | GAAAGGAATGAAGTTCCTCTAGAACTCCCAGTGAAATaGAGCAGAGCTTCTTACTTAAGTCTTCCCTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: ERNEVPLELPVK*SRASYLSLPLE Trigger: CTCTAAGGGAAGACTTAAGTAAGAAGCTCTGCTCAATTTCACTGGGAGTTCTAGAGGAACTTCATTCCTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR TCA 90 bp | AATGAAGTTCCTCTAGAACTCCCAGTGAAATTGAGCAGAGCTTCTTACTTAAGTTGCCATCCTGTAATGTaGTATAGAAGGAGTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: NEVPLELPVKLSRASYLSCHPVM*YRRSFS Trigger: ACTGAAACTCCTTCTATATCACATTACAGGATGGCA...ACTTAAGTAAGAAGCTCTGCTCAATTTCACTGGGAGTTCTAGAGGAACTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR GCA 90 bp | CAAGAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCGTCTCAACTTCATCTTaGATGCTTAGAAAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: QEKNIHMFFTPGQSSKCSVSTSS*MLRKME Trigger: TTCCATCTTTCTAAGCATGCAAGATGAAGTTGAGAC...GCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTCTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| CDS TCA 90 bp | TTCTTTTGGAATTCTGATACTGATTGTGGGCAATCACCTTCTGCGTaGGGAGGAGAGACTGGCGCAGCCGTTCCTCCGCGCTCAAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: FFWNSDTDCGQSPSA*GGETGAAVPPRSRP Trigger: GGGCCTTGAGCGCGGAGGAACGGCTGCGCCAGTCTCTCCTCCTCACGCAGAAGGTGATTGCCCACAATCAGTATCAGAATTCCAAAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085256.8 ENSMUST00000118870.8 |
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| CDS-3UTR CAA 90 bp | AAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTCCCCGCCCCAGCCGGTaGCCATCTTTGTCAAACCCG | + |
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Preference number: 5 (lower is better) Translates to: KNIHMFFTPGQSSKCSRRPRPSR*PSLSNP Trigger: CGGGTTTGACAAAGATGGCAACCGGCTGGGGCGGGG...ACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| CDS-3UTR CAA 90 bp | TGTGTGACATTGATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTGTGATTGCTCTGGAATaGGTACCGAGGGATGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: CVTLMNRFPQRPIPLPPGVIALE*VPRDEA Trigger: TGCTTCATCCCTCGGTACCAATTCCAGAGCAATCAC...ACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCATCAATGTCACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| CDS-3UTR CAA 90 bp | AGAGCTTCTTACTTAAGTCTTCCCTTAGAGCTGACTGATGCATGTATTCCTCCTGGTAGAGGACCAGACTaGATCCAGAGGCTACAGTTG | + |
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Preference number: 5 (lower is better) Translates to: RASYLSLPLELTDACIPPGRGPD*IQRLQL Trigger: CAACTGTAGCCTCTGGATCAAGTCTGGTCCTCTACC...AGGAGGAATACATGCATCAGTCAGCTCTAAGGGAAGACTTAAGTAAGAAGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR CAA 90 bp | AAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCCGTCGTGGTGATTGCTCTGGAATaGGTACCGAGGGATGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: KIYICSLHRDRAVSVAVVVIALE*VPRDEA Trigger: TGCTTCATCCCTCGGTACCAATTCCAGAGCAATCAC...CACGACGGCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| CDS TCA 90 bp | AGTAAAGCAATTTCTTCAGATGACGTTAACCTCACCATGTCCATGTaGTTGCTCTGGAATTGGTACCGAGGGATGAAGCAGATTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: SKAISSDDVNLTMSM*LLWNWYRGMKQILP Trigger: AGGCAAAATCTGCTTCATCCCTCGGTACCAATTCCAGAGCAATCACATGGACATGGTGAGGTTAACGTCATCTGAAGAAATTGCTTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085256.8 ENSMUST00000118870.8 |
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| CDS-3UTR CAA 90 bp | ATGAATCGTTTCCCACAGAGGCCCATTCCCTTACCTCCAGGTAAAAACCTGACTTGTTTGAAAATGTCCTaGATGATTACTTCCGTCTCA | + |
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Preference number: 5 (lower is better) Translates to: MNRFPQRPIPLPPGKNLTCLKMS*MITSVS Trigger: TGAGACGGAAGTAATCATCAAGGACATTTTCAAACA...AGTCAGGTTTTTACCTGGAGGTAAGGGAATGGGCCTCTGTGGGAAACGATTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118870.8 |
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| CDS-3UTR CAA 90 bp | AGTTCCTCTAGAACTCCCAGTGAAATTGAGCAGAGCTTCTTACTTAAGTCTTCCATCCAGAGGCTACAGTaGCCATCCTGTAATGTGATA | + |
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Preference number: 5 (lower is better) Translates to: SSSRTPSEIEQSFLLKSSIQRLQ*PSCNVI Trigger: TATCACATTACAGGATGGCAACTGTAGCCTCTGGAT...GGAAGACTTAAGTAAGAAGCTCTGCTCAATTTCACTGGGAGTTCTAGAGGAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185894.2 |
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| CDS-3UTR CAA 90 bp | CAAGAGAAAAATATACATATGTTCTTTACACCGGGACAGAGCAGTAAGTGTAGCTGTTTGAAAATGTCCTaGATGATTACTTCCGTCTCA | + |
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Preference number: 5 (lower is better) Translates to: QEKNIHMFFTPGQSSKCSCLKMS*MITSVS Trigger: TGAGACGGAAGTAATCATCAAGGACATTTTCAAACA...GCTACACTTACTGCTCTGTCCCGGTGTAAAGAACATATGTATATTTTTCTCTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085256.8 |
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| CDS GCA 72 bp | CGCAGCCGTTCCTCCGCGCTCAAGGCCCTCAAGCGCTaGTTCAGCTCGGCCCGCAGGCCCCGCTTGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: RSRSSALKALKR*FSSARRPRLAL Trigger: CAGTGCCAAGCGGGGCCTGCGGGCCGAGCTGAAGCAGCGCTTGAGGGCCTTGAGCGCGGAGGAACGGCTGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085256.8 ENSMUST00000118870.8 |
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| CDS CAA 90 bp | GTGATTGCTCTGGAATTGGTACCGAGGGATGAAGCAGATTTTGCCTaGTTTGAAAATGTCCTTGATGATTACTTCCGTCTCAACTTCATC | + |
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Preference number: 6 (lower is better) Translates to: VIALELVPRDEADFA*FENVLDDYFRLNFI Trigger: GATGAAGTTGAGACGGAAGTAATCATCAAGGACATTTTCAAACAAGGCAAAATCTGCTTCATCCCTCGGTACCAATTCCAGAGCAATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085256.8 ENSMUST00000118870.8 |
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