Pregenerated sensors for MTHFD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005667Ensembl transcript IDs: ENSMUST00000005810.9, ENSMUST00000203847.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGGGGACAGCTAGGCCCAGCCAGCTGAGCTCTCCTCAGGGCAATCGGAGCACTGTAAGGGAGTGCCGTTaGAACCCTGTGCTGCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: RGTARPSQLSSPQGNRSTVRECR*NPVLLS Trigger: AGAAAGCAGCACAGGGTTTCAACGGCACTCCCTTAC...AGTGCTCCGATTGCCCTGAGGAGAGCTCAGCTGGCTGGGCCTAGCTGTCCCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCACCCCCGGGCCGTTCGTaGGCTCCATCTGTGTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPPPGRS*APSVCS Trigger: GCTGCACACAGATGGAGCTCACGAACGGCCCGGGGG...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTCGGAGCACTCCTGGCTaGACTCCCGAGAGAGTAAGG | + |
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Preference number: 2 (lower is better) Translates to: MKFSIHSRCEDVSCASPGRSTPG*TPERVR Trigger: CCTTACTCTCTCGGGAGTGCAGCCAGGAGTGCTCCG...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR GCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCACGCCCCATGGGGTTaGTGGCAGCATAGAGTACTG | + |
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Preference number: 2 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPHAPWG*WQHRVL Trigger: CAGTACTCTATGCTGCCAGCAACCCCATGGGGCGTG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR TCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCGCGCTGTTTGGACTTaGACACTTCCAGCTCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPRAVWT*TLPAPL Trigger: CAGAGGAGCTGGAAGTGTTCAAGTCCAAACAGCGCG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR CCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGCAGCATAGAGTACTaGTCCAAGCACATTCGCCCC | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPGSIEY*SKHIRP Trigger: GGGGCGAATGTGCTTGGACCAGTACTCTATGCTGCC...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTCACCAGGGACGGGAGTaGTATAACCAGCTTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: MKFSIHSRCEDVSCASPGHQGRE*YNQLSS Trigger: AGAAGAAAGCTGGTTATATCACTCCCGTCCCTGGTG...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTCACATCGATGACCGCTaGTCCTTCCTTGATCATGTC | + |
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Preference number: 2 (lower is better) Translates to: MKFSIHSRCEDVSCASPGHIDDR*SFLDHV Trigger: GACATGATCAAGGAAGGAGCAGCGGTCATCGATGTG...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR TCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTGCTTGGGACCTAAGATaGGTCATCAACTTGTATTGG | + |
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Preference number: 2 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPAWDLR*VINLYW Trigger: CCAATACAAGTTGATGACTCATCTTAGGTCCCAAGC...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCTTTGGTTTGAAAGTTaGACTCAAAGGCTTGGGACC | + |
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Preference number: 2 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPLWFES*TQRLGT Trigger: GGTCCCAAGCCTTTGAGTTCAACTTTCAAACCAAAG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | AAAACAAATAGGCCTCAAAGCACCCGCCAAAGAAAACAGACACACAACTCTCTTCTAGGCCCAGCCAGCTaGGCTCTCCTCAGGGCAATC | + |
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Preference number: 2 (lower is better) Translates to: KTNRPQSTRQRKQTHNSLLGPAS*ALLRAI Trigger: GATTGCCCTGAGGAGAGCTCAGCTGGCTGGGCCTAG...AAGAGAGTTGTGTGTCTGTTTTCTTTGGCGGGTGCTTTGAGGCCTATTTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTTTGGGAGTGTATCGATaGGATATTGTGACTGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: MKFSIHSRCEDVSCASPGLGVYR*DIVTVA Trigger: TGCCACAGTCACAATATCTCATCGATACACTCCCAA...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCACAGGAGAAACGGCATTaGAGACCTTCCTCTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPQEKRH*RPSSHQ Trigger: TTGATGAGAGGAAGGTCTGCAATGCCGTTTCTCCTG...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCATCTGCAAGGATCGTGTaGTTCTTCAGCTGCTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPSARIV*FFSCSL Trigger: CAAAGAGCAGCTGAAGAAGCACACGATCCTTGCAGA...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR TCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCACGTTGTTCAGCTTCCTaGTTGAATTCAGCAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPRCSAS*LNSAAL Trigger: AAGAGCTGCTGAATTCAATCAGGAAGCTGAACAACG...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTAGATATTACAATGTCTaGAAGGATCGTGTGCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPRYYNV*KDRVLL Trigger: AAGAAGCACACGATCCTTGCAGACATTGTAATATCT...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR GCA 90 bp | AAAATAGATAGGACAAGCTCACAGGAGGATAACAGCAAGTGGGGAGACTCTAACGCCGTTGAAACCCTGTaGTGCTTTCTCTTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: KIDRTSSQEDNSKWGDSNAVETL*CFLFLS Trigger: GGAAAGGAAGAGAAAGCAGCACAGGGTTTCAACGGC...GTTAGAGTCTCCCCACTTGCTGTTATCCTCCTGTGAGCTTGTCCTATCTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCATCCACACCCGACAGATaGGCTTTATTTAAAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: LMKFSIHSRCEDVSCASPSTPDR*ALFKNK Trigger: TTTGTTTTTAAATAAAGCTCATCTGTCGGGTGTGGA...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAAACAAATAGGCCTCAAAGCACCCGCCAAAGAAAACAGACACACAACTCTCAGGTTTCCTTTGGTTTaGAAGTTGAACTCAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: QKQIGLKAPAKENRHTTLRFPLV*KLNSKA Trigger: AGCCTTTGAGTTCAACTTTCAAACCAAAGGAAACCT...GAGAGTTGTGTGTCTGTTTTCTTTGGCGGGTGCTTTGAGGCCTATTTGTTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR CAA 90 bp | TTCTCTTCCTTTCCCTTCATTTCCTCTACTAAGGTTTCCTTTGGTTaGAAAGTTGAACTCAAAGGCTTGGGACCTAAGATGAGTCATCAA | + |
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Preference number: 2 (lower is better) Translates to: FSSFPFISSTKVSFG*KVELKGLGPKMSHQ Trigger: TTGATGACTCATCTTAGGTCCCAAGCCTTTGAGTTCAACTTTCAAACCAAAGGAAACCTTAGTAGAGGAAATGAAGGGAAAGGAAGAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR TCA 72 bp | CGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTaGGCTCTCCTCAGGGCAATCGGAGCACTCCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: RPATGGQLGPAS*ALLRAIGALLA Trigger: AGCCAGGAGTGCTCCGATTGCCCTGAGGAGAGCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR CAA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCAAGGTTTCCTTTGGTTaGAAAGTTGAACTCAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: NPSLTTRHRGTARPSQLSKVSFG*KVELKG Trigger: GCCTTTGAGTTCAACTTTCAAACCAAAGGAAACCTT...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR CAA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTAACACTGCATTCCTCTaGGCCTGCTTAGCCTCTCGG | + |
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Preference number: 3 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPNTAFL*ACLASR Trigger: CCGAGAGGCTAAGCAGGCCAAGAGGAATGCAGTGTT...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005810.9 ENSMUST00000203847.3 |
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| 3UTR CCA 72 bp | ATAGATAGGACAAGCTCACAGGAGGATAACAGCAAGTaGGGAGACTCTAACCCTTCCCTGACGACCCGCCAC | + |
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Preference number: 3 (lower is better) Translates to: IDRTSSQEDNSK*GDSNPSLTTRH Trigger: GTGGCGGGTCGTCAGGGAAGGGTTAGAGTCTCCCCACTTGCTGTTATCCTCCTGTGAGCTTGTCCTATCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR CAA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTGCATTCCAACGTTTTTaGACCTGCCAGCCACTACCA | + |
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Preference number: 3 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPAFQRF*TCQPLP Trigger: TGGTAGTGGCTGGCAGGTCAAAAAACGTTGGAATGC...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR CAA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCTGTGTGCAGCAACATaGCAATCGGCATTCCAACGT | + |
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Preference number: 3 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPLCAAT*QSAFQR Trigger: ACGTTGGAATGCCGATTGCAATGTTGCTGCACACAG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR CAA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTACATCTCCAACCAATTaGGGCTTTGCAGTGACAGGA | + |
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Preference number: 3 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPTSPTN*GFAVTG Trigger: TCCTGTCACTGCAAAGCCCAAATTGGTTGGAGATGT...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR CAA 90 bp | CAAAAACAAATAGGCCTCAAAGCACCCGCCAAAGAAAACAGACACACAACTCTCAACACTGCATTCCTCTaGGCCTGCTTAGCCTCTCGG | + |
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Preference number: 3 (lower is better) Translates to: QKQIGLKAPAKENRHTTLNTAFL*ACLASR Trigger: CCGAGAGGCTAAGCAGGCCAAGAGGAATGCAGTGTT...GAGAGTTGTGTGTCTGTTTTCTTTGGCGGGTGCTTTGAGGCCTATTTGTTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR-3UTR CAA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTTCTACGTTCTCATCGTaGTTCAGCTTCCTGATTGAA | + |
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Preference number: 3 (lower is better) Translates to: MKFSIHSRCEDVSCASPGSTFSS*FSFLIE Trigger: TTCAATCAGGAAGCTGAACAACGATGAGAACGTAGA...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| 3UTR-3UTR CAA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTACAATTGTCTCACTGTaGATTCCATATGACAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: MKFSIHSRCEDVSCASPGTIVSL*IPYDRG Trigger: ACCTCTGTCATATGGAATCAACAGTGAGACAATTGT...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS-3UTR GCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTCGGGGGTGGCAGCCGTaGGTGGGGCGCAACAACCGC | + |
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Preference number: 4 (lower is better) Translates to: MKFSIHSRCEDVSCASPGRGWQP*VGRNNR Trigger: GCGGTTGTTGCGCCCCACGCACGGCTGCCACCCCCG...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005810.9 ENSMUST00000203847.3 |
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| CDS-3UTR CCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCGCACTGCCGCCAGGTaGAAGGGCTGTAGGCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPRTAAR*KGCRRG Trigger: CCCCCGCCTACAGCCCTTCCACCTGGCGGCAGTGCG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005810.9 ENSMUST00000203847.3 |
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| CDS-3UTR CCA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCGAACATAGGAGTGACTaGCGGGATTGTCACCAACCA | + |
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Preference number: 4 (lower is better) Translates to: NPSLTTRHRGTARPSQLSEHRSD*RDCHQP Trigger: TGGTTGGTGACAATCCCGCCAGTCACTCCTATGTTC...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR TCA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCCAATTGTCTCACTGTTaGTTCCCACTTCAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NPSLTTRHRGTARPSQLSQLSHC*FPLQLL Trigger: CAGCAGCTGAAGTGGGAATCAACAGTGAGACAATTG...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR TCA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCCGTTGTTCAGCTTCCTaGTTGAATTCAGCAGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NPSLTTRHRGTARPSQLSRCSAS*LNSAAL Trigger: AAGAGCTGCTGAATTCAATCAGGAAGCTGAACAACG...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR TCA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCTTGGGAGTGTATCGATaGGATATTGTGACTGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: NPSLTTRHRGTARPSQLSLGVYR*DIVTVA Trigger: TGCCACAGTCACAATATCTCATCGATACACTCCCAA...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CCA 90 bp | CAAAAACAAATAGGCCTCAAAGCACCCGCCAAAGAAAACAGACACACAACTCTCCGCACTGCCGCCAGGTaGAAGGGCTGTAGGCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: QKQIGLKAPAKENRHTTLRTAAR*KGCRRG Trigger: CCCCCGCCTACAGCCCTTCCACCTGGCGGCAGTGCG...GAGAGTTGTGTGTCTGTTTTCTTTGGCGGGTGCTTTGAGGCCTATTTGTTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTTCTTCCCTTCGGATGTaGCCACTTCAGCTGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: MKFSIHSRCEDVSCASPGSSLRM*PLQLLP Trigger: GGGCAGCAGCTGAAGTGGCCACATCCGAAGGGAAGA...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS-3UTR TCA 90 bp | AAAATAGATAGGACAAGCTCACAGGAGGATAACAGCAAGTGGGGAGACTCTAACCCCCCGGGCCGTTCGTaGGCTCCATCTGTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KIDRTSSQEDNSKWGDSNPPGRS*APSVCS Trigger: GCTGCACACAGATGGAGCTCACGAACGGCCCGGGGG...GTTAGAGTCTCCCCACTTGCTGTTATCCTCCTGTGAGCTTGTCCTATCTATTTT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR TCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTCGCGCTGTTTGGACTTaGACACTTCCAGCTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: MKFSIHSRCEDVSCASPGRAVWT*TLPAPL Trigger: CAGAGGAGCTGGAAGTGTTCAAGTCCAAACAGCGCG...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR TCA 90 bp | AGGACGTCTCCTGTGCATCACCAGGTCAAAGGCAGGACAACTGATGGGCATCCTCTAGAAACAGCTGGCTaGGATGTGCCTGTGTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RTSPVHHQVKGRTTDGHPLETAG*DVPVSA Trigger: AGCAGACACAGGCACATCTCAGCCAGCTGTTTCTAG...AGGATGCCCATCAGTTGTCCTGCCTTTGACCTGGTGATGCACAGGAGACGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS-3UTR GCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTTGTGGCCACTTCAGCTaGTGCCCTGGTTTTGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: MKFSIHSRCEDVSCASPGCGHFS*CPGFVE Trigger: CTCAACAAAACCAGGGCAGCAGCTGAAGTGGCCACA...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS-3UTR CCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAAGTGGTCTGAGCACCTaGTGTCTTCCCTTCGGATGT | + |
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Preference number: 4 (lower is better) Translates to: LMKFSIHSRCEDVSCASPSGLST*CLPFGC Trigger: ACATCCGAAGGGAAGACACCAGGTGCTCAGACCACT...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS-3UTR TCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCACACCAGGGACGGGAGTaGTATAACCAGCTTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LMKFSIHSRCEDVSCASPHQGRE*YNQLSS Trigger: AGAAGAAAGCTGGTTATATCACTCCCGTCCCTGGTG...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR GCA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTTCTGCAAGGATCGTGTaGTTCTTCAGCTGCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: MKFSIHSRCEDVSCASPGSARIV*FFSCSL Trigger: CAAAGAGCAGCTGAAGAAGCACACGATCCTTGCAGA...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CCA 90 bp | TTGATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGAACATAGGAGTGACTaGCGGGATTGTCACCAACCA | + |
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Preference number: 4 (lower is better) Translates to: LMKFSIHSRCEDVSCASPEHRSD*RDCHQP Trigger: TGGTTGGTGACAATCCCGCCAGTCACTCCTATGTTC...TGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005810.9 ENSMUST00000203847.3 |
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| CDS-3UTR GCA 90 bp | AAAACAAATAGGCCTCAAAGCACCCGCCAAAGAAAACAGACACACAACTCTCTTCACATCGATGACCGCTaGTCCTTCCTTGATCATGTC | + |
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Preference number: 4 (lower is better) Translates to: KTNRPQSTRQRKQTHNSLHIDDR*SFLDHV Trigger: GACATGATCAAGGAAGGAGCAGCGGTCATCGATGTG...AAGAGAGTTGTGTGTCTGTTTTCTTTGGCGGGTGCTTTGAGGCCTATTTGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR GCA 90 bp | AAAATAGATAGGACAAGCTCACAGGAGGATAACAGCAAGTGGGGAGACTCTAACAGATATTACAATGTCTaGAAGGATCGTGTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: KIDRTSSQEDNSKWGDSNRYYNV*KDRVLL Trigger: AAGAAGCACACGATCCTTGCAGACATTGTAATATCT...GTTAGAGTCTCCCCACTTGCTGTTATCCTCCTGTGAGCTTGTCCTATCTATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| 3UTR CAA 72 bp | TTTCCCTTCATTTCCTCTACTAAGGTTTCCTTTGGTTaGAAAGTTGAACTCAAAGGCTTGGGACCTAAGATG | + |
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Preference number: 4 (lower is better) Translates to: FPFISSTKVSFG*KVELKGLGPKM Trigger: CATCTTAGGTCCCAAGCCTTTGAGTTCAACTTTCAAACCAAAGGAAACCTTAGTAGAGGAAATGAAGGGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CAA 90 bp | AACCCTTCCCTGACGACCCGCCACAGGGGGACAGCTAGGCCCAGCCAGCTGAGCGCATTCCAACGTTTTTaGACCTGCCAGCCACTACCA | + |
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Preference number: 5 (lower is better) Translates to: NPSLTTRHRGTARPSQLSAFQRF*TCQPLP Trigger: TGGTAGTGGCTGGCAGGTCAAAAAACGTTGGAATGC...GCTCAGCTGGCTGGGCCTAGCTGTCCCCCTGTGGCGGGTCGTCAGGGAAGGGTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CAA 90 bp | AGGGGGACAGCTAGGCCCAGCCAGCTGAGCTCTCCTCAGGGCAATCGGAGCACTTCTACGTTCTCATCGTaGTTCAGCTTCCTGATTGAA | + |
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Preference number: 5 (lower is better) Translates to: RGTARPSQLSSPQGNRSTSTFSS*FSFLIE Trigger: TTCAATCAGGAAGCTGAACAACGATGAGAACGTAGA...AGTGCTCCGATTGCCCTGAGGAGAGCTCAGCTGGCTGGGCCTAGCTGTCCCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CAA 90 bp | ATGAAGTTCAGCATCCACTCTCGGTGTGAGGACGTCTCCTGTGCATCACCAGGTACATCTCCAACCAATTaGGGCTTTGCAGTGACAGGA | + |
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Preference number: 5 (lower is better) Translates to: MKFSIHSRCEDVSCASPGTSPTN*GFAVTG Trigger: TCCTGTCACTGCAAAGCCCAAATTGGTTGGAGATGT...ACCTGGTGATGCACAGGAGACGTCCTCACACCGAGAGTGGATGCTGAACTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CAA 90 bp | GATAGGACAAGCTCACAGGAGGATAACAGCAAGTGGGGAGACTCTAACCCTTCCACAATTGTCTCACTGTaGATTCCCACTTCAGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: DRTSSQEDNSKWGDSNPSTIVSL*IPTSAA Trigger: AGCAGCTGAAGTGGGAATCAACAGTGAGACAATTGT...GGAAGGGTTAGAGTCTCCCCACTTGCTGTTATCCTCCTGTGAGCTTGTCCTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS-3UTR CAA 90 bp | AAACCCTTTAATAAGAAAATCCGACTAAGTCTTATATTAACCCAAGCTCCTGGACTGTGTGCAGCAACATaGCAATCGGCATTCCAACGT | + |
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Preference number: 5 (lower is better) Translates to: KPFNKKIRLSLILTQAPGLCAAT*QSAFQR Trigger: ACGTTGGAATGCCGATTGCAATGTTGCTGCACACAG...TCCAGGAGCTTGGGTTAATATAAGACTTAGTCGGATTTTCTTATTAAAGGGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005810.9 |
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| CDS CCA 72 bp | GTGTCTGCTCGTATGACAGTCAGTGGTCTGAGCACCTaGTGTCTTCCCTTCGGATGTGGCCACTTCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VSARMTVSGLST*CLPFGCGHFSC Trigger: GCAGCTGAAGTGGCCACATCCGAAGGGAAGACACCAGGTGCTCAGACCACTGACTGTCATACGAGCAGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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| CDS CCA 72 bp | CTGAGATGTGCCTGTGTCTGCTCGTATGACAGTCAGTaGTCTGAGCACCTGGTGTCTTCCCTTCGGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: LRCACVCSYDSQ*SEHLVSSLRMW Trigger: CCACATCCGAAGGGAAGACACCAGGTGCTCAGACCACTGACTGTCATACGAGCAGACACAGGCACATCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203847.3 |
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