Pregenerated sensors for MTFR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019992Ensembl transcript IDs: ENSMUST00000169712.3, ENSMUST00000217608.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTaGAGATGGGTCCTGGGGTACAGCTTGATCACCCTAACAGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: AGTVFLSVFLIPQAG*RWVLGYSLITLTEE Trigger: CTCCTCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 90 bp | ACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATaGGTCCTGGGGTACAGCTTGATCACCCTAACAGAGGAGGTGATT | + |
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Preference number: 1 (lower is better) Translates to: TVFLSVFLIPQAGWR*VLGYSLITLTEEVI Trigger: AATCACCTCCTCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 90 bp | AAAAGCAGGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTaGGTGGAGATGGGTCCTGGGGTACAGCTTGATCACCCTAACAGA | + |
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Preference number: 1 (lower is better) Translates to: KSRDSILKCLPHSSG*VEMGPGVQLDHPNR Trigger: TCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCCTGCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR TCA 90 bp | AGTGAAGGATGCCACGTGGCACATCTGGGTCTGTCTGTCCAAGTGTaGGCACAGCTTTTGCTTCTGATAGCCTGGATAACTGCTTTTATA | + |
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Preference number: 1 (lower is better) Translates to: SEGCHVAHLGLSVQV*AQLLLLIAWITAFI Trigger: TATAAAAGCAGTTATCCAGGCTATCAGAAGCAAAAGCTGTGCTCACACTTGGACAGACAGACCCAGATGTGCCACGTGGCATCCTTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 90 bp | AGAACAAAGGGAACAAACCAGCCATCTGTGTGTGCAAAGCCAGTGTaGATGGAACTTATCAAGGGTCTACTTCTACTTGCAGTAGAAAGT | + |
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Preference number: 1 (lower is better) Translates to: RTKGTNQPSVCAKPV*MELIKGLLLLAVES Trigger: ACTTTCTACTGCAAGTAGAAGTAGACCCTTGATAAGTTCCATCCACACTGGCTTTGCACACACAGATGGCTGGTTTGTTCCCTTTGTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR-3UTR TCA 90 bp | GGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATGGGTCCTGTCTGTCCAAGTGTaGGCACAGCTTTTGCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: GTVFLSVFLIPQAGWRWVLSVQV*AQLLLL Trigger: CAGAAGCAAAAGCTGTGCTCACACTTGGACAGACAG...GACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR-3UTR GCA 90 bp | GATCACCCTAACAGAGGAGGTGATTCTCTGACAGGCAGTGAAGGATGCCACGTGGATAGCCTGGATAACTaGTTTTATATTATCAGTCCT | + |
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Preference number: 2 (lower is better) Translates to: DHPNRGGDSLTGSEGCHVDSLDN*FYIISP Trigger: AGGACTGATAATATAAAAGCAGTTATCCAGGCTATC...CACGTGGCATCCTTCACTGCCTGTCAGAGAATCACCTCCTCTGTTAGGGTGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR GCA 72 bp | AACAGAGGAGGTGATTCTCTGACAGGCAGTGAAGGATaGCACGTGGCACATCTGGGTCTGTCTGTCCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: NRGGDSLTGSEG*HVAHLGLSVQV Trigger: CACTTGGACAGACAGACCCAGATGTGCCACGTGGCATCCTTCACTGCCTGTCAGAGAATCACCTCCTCTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR TCA 72 bp | TACAGCTTGATCACCCTAACAGAGGAGGTGATTCTCTaGCAGGCAGTGAAGGATGCCACGTGGCACATCTGG | + |
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Preference number: 3 (lower is better) Translates to: YSLITLTEEVIL*QAVKDATWHIW Trigger: CCAGATGTGCCACGTGGCATCCTTCACTGCCTGTCAGAGAATCACCTCCTCTGTTAGGGTGATCAAGCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 72 bp | TTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATaGGTCCTGGGGTACAGCTTGATCACCCTAACAGAG | + |
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Preference number: 3 (lower is better) Translates to: LSVFLIPQAGWR*VLGYSLITLTE Trigger: CTCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 72 bp | GTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTaGAGATGGGTCCTGGGGTACAGCTTGATCACCCTA | + |
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Preference number: 3 (lower is better) Translates to: VFLSVFLIPQAG*RWVLGYSLITL Trigger: TAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 72 bp | GACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTaGGTGGAGATGGGTCCTGGGGTACAGCTTGATCAC | + |
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Preference number: 3 (lower is better) Translates to: DSILKCLPHSSG*VEMGPGVQLDH Trigger: GTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| 3UTR CCA 72 bp | GGAACAAACCAGCCATCTGTGTGTGCAAAGCCAGTGTaGATGGAACTTATCAAGGGTCTACTTCTACTTGCA | + |
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Preference number: 3 (lower is better) Translates to: GTNQPSVCAKPV*MELIKGLLLLA Trigger: TGCAAGTAGAAGTAGACCCTTGATAAGTTCCATCCACACTGGCTTTGCACACACAGATGGCTGGTTTGTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | CCTCATTCCTCAGGCTGGGTGGAGATGGGTCCTGGGGTACAGCTTGATCACCCTGGGTCTGCCACCTGGTaGCCTTTCCACAGGCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: PHSSGWVEMGPGVQLDHPGSATW*PFHRPK Trigger: CTTCGGCCTGTGGAAAGGTCACCAGGTGGCAGACCC...AGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | CAGGCTGGGTGGAGATGGGTCCTGGGGTACAGCTTGATCACCCTAACAGAGGAGCTCTGGCTTTTTGAATaGTGGCTGTCATCGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: QAGWRWVLGYSLITLTEELWLFE*WLSSVF Trigger: GAAGACCGATGACAGCCATCATTCAAAAAGCCAGAG...CTCCTCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR GCA 90 bp | GCAGTGAAGGATGCCACGTGGCACATCTGGGTCTGTCTGTCCAAGTGTGAGCACTCTCAGGTCCTGCATTaGCACAATCGCAGCAATCTG | + |
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Preference number: 4 (lower is better) Translates to: AVKDATWHIWVCLSKCEHSQVLH*HNRSNL Trigger: CAGATTGCTGCGATTGTGGCAATGCAGGACCTGAGA...GTGCTCACACTTGGACAGACAGACCCAGATGTGCCACGTGGCATCCTTCACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR GCA 90 bp | CGTGGCACATCTGGGTCTGTCTGTCCAAGTGTGAGCACAGCTTTTGCTTCTGATCTCTCTCTCAGGTCCTaGATTGCCACAATCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RGTSGSVCPSVSTAFASDLSLRS*IATIAA Trigger: TGCTGCGATTGTGGCAATGCAGGACCTGAGAGAGAG...ATCAGAAGCAAAAGCTGTGCTCACACTTGGACAGACAGACCCAGATGTGCCACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | GATCACCCTAACAGAGGAGGTGATTCTCTGACAGGCAGTGAAGGATGCCACGTGCATGGGAAGAGAACTTaGAGGCTGCAGAGAAAACTG | + |
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Preference number: 4 (lower is better) Translates to: DHPNRGGDSLTGSEGCHVHGKRT*RLQRKL Trigger: CAGTTTTCTCTGCAGCCTCCAAGTTCTCTTCCCATG...CACGTGGCATCCTTCACTGCCTGTCAGAGAATCACCTCCTCTGTTAGGGTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | CGTGGCACATCTGGGTCTGTCTGTCCAAGTGTGAGCACAGCTTTTGCTTCTGATGGTCTTCTTAACACCTaGGAGCTGCCTTTCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: RGTSGSVCPSVSTAFASDGLLNT*ELPFHF Trigger: GAAATGGAAAGGCAGCTCTCAGGTGTTAAGAAGACC...ATCAGAAGCAAAAGCTGTGCTCACACTTGGACAGACAGACCCAGATGTGCCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | CAGCTTTTGCTTCTGATAGCCTGGATAACTGCTTTTATATTATCAGTCCTTCCCCCACACTCAGCCCAGTaGTCGCTGATGATGGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: QLLLLIAWITAFILSVLPPHSAQ*SLMMAA Trigger: TGCCGCCATCATCAGCGACCACTGGGCTGAGTGTGG...GGGAAGGACTGATAATATAAAAGCAGTTATCCAGGCTATCAGAAGCAAAAGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | GGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATGGGTCGACTATGTCGAAATCTaGGACAACTGGCTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GTVFLSVFLIPQAGWRWVDYVEI*DNWLLH Trigger: ATGAAGAAGCCAGTTGTCTCAGATTTCGACATAGTC...GACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | GACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATGGGTCCTGGGATCAACTCAAAATaGGGTCTTCTGCAAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: DSILKCLPHSSGWVEMGPGINSK*GLLQGF Trigger: AAAACCTTGCAGAAGACCTCATTTTGAGTTGATCCC...AGGACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | GATAGCCTGGATAACTGCTTTTATATTATCAGTCCTTCCCTTAGGTCATCAACTACAATCGCAGCAATCTaGGACCGGAGAAAAGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: DSLDNCFYIISPSLRSSTTIAAI*DRRKVS Trigger: GCTGACTTTTCTCCGGTCTCAGATTGCTGCGATTGT...AGTTGATGACCTAAGGGAAGGACTGATAATATAAAAGCAGTTATCCAGGCTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR GCA 90 bp | AAACAATATCATCTTCTGCTCACTAAAAATCCACAAGCTGCTGAAGGCCAAACATTGGCAGATCCAGGCTaGATGGGAAGAGAACTTGGA | + |
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Preference number: 4 (lower is better) Translates to: KQYHLLLTKNPQAAEGQTLADPG*MGRELG Trigger: TCCAAGTTCTCTTCCCATGCAGCCTGGATCTGCCAA...TGTTTGGCCTTCAGCAGCTTGTGGATTTTTAGTGAGCAGAAGATGATATTGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | CTTCCAAAAGCAGGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGAACGTCAGCAAAAGATaGAACCCTAAGTTCATAATC | + |
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Preference number: 4 (lower is better) Translates to: LPKAGTVFLSVFLIPQAGNVSKR*NPKFII Trigger: GATTATGAACTTAGGGTTCCATCTTTTGCTGACGTT...CCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCCTGCTTTTGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | AAGCCAGTGTGGATGGAACTTATCAAGGGTCTACTTCTACTTGCAGTAGAAAGTCAAATCAGCAAATCCTaGTCTACGGGAACACCAAAA | + |
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Preference number: 4 (lower is better) Translates to: KPVWMELIKGLLLLAVESQISKS*STGTPK Trigger: TTTTGGTGTTCCCGTAGACCAGGATTTGCTGATTTG...ACTTTCTACTGCAAGTAGAAGTAGACCCTTGATAAGTTCCATCCACACTGGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | TTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTTCTGTTGGAGAATGTGATACTTGGAGCATGGTCTaGTTCCACACTCAGCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: FILSVLPLGHQLSVGECDTWSMV*FHTQPS Trigger: ACTGGGCTGAGTGTGGAACCAGACCATGCTCCAAGT...ATCACATTCTCCAACAGAAAGTTGATGACCTAAGGGAAGGACTGATAATATAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CCA 90 bp | TGGATAACTGCTTTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTTCTGTTCAGATCCAGGCTGCATaGGAAGAGAACTTGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: WITAFILSVLPLGHQLSVQIQAA*EENLEA Trigger: AGCCTCCAAGTTCTCTTCCCATGCAGCCTGGATCTG...AACAGAAAGTTGATGACCTAAGGGAAGGACTGATAATATAAAAGCAGTTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | AAACAATATCATCTTCTGCTCACTAAAAATCCACAAGCTGCTGAAGGCCAAACAAAGTCTCTGGCTTTTTaGATGATGGCTGTCATCGGT | + |
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Preference number: 4 (lower is better) Translates to: KQYHLLLTKNPQAAEGQTKSLAF*MMAVIG Trigger: ACCGATGACAGCCATCATTCAAAAAGCCAGAGACTT...TGTTTGGCCTTCAGCAGCTTGTGGATTTTTAGTGAGCAGAAGATGATATTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | TGGATAACTGCTTTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTTCTGTTCACTGGATCCCATTCTaGACTCCGTCTCTTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: WITAFILSVLPLGHQLSVHWIPF*TPSLPL Trigger: AAGAGGAAGAGACGGAGTTCAGAATGGGATCCAGTG...AACAGAAAGTTGATGACCTAAGGGAAGGACTGATAATATAAAAGCAGTTATCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | AGCCATAATTTTAGGCAGCTCACTGAACCATGTATTCCATTTTCAGTAGCAGTCAACAATACTCCGAGCTaGCCCACAGTTTTTATTTTG | + |
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Preference number: 4 (lower is better) Translates to: SHNFRQLTEPCIPFSVAVNNTPS*PTVFIL Trigger: CAAAATAAAAACTGTGGGTCAGCTCGGAGTATTGTT...GACTGCTACTGAAAATGGAATACATGGTTCAGTGAGCTGCCTAAAATTATGGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR GCA 90 bp | GATAGCCTGGATAACTGCTTTTATATTATCAGTCCTTCCCTTAGGTCATCAACTGGAATCATCTTGAAATaGAAACTTCTGCTTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: DSLDNCFYIISPSLRSSTGIILK*KLLLQC Trigger: GCACTGAAGCAGAAGTTTGCATTTCAAGATGATTCC...AGTTGATGACCTAAGGGAAGGACTGATAATATAAAAGCAGTTATCCAGGCTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR TCA 90 bp | AAACAATATCATCTTCTGCTCACTAAAAATCCACAAGCTGCTGAAGGCCAAACAAATGAAAGACATTGGTaGAGGAAGTTCAAGAAAACG | + |
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Preference number: 4 (lower is better) Translates to: KQYHLLLTKNPQAAEGQTNERHW*RKFKKT Trigger: CGTTTTCTTGAACTTCCTTCACCAATGTCTTTCATT...TGTTTGGCCTTCAGCAGCTTGTGGATTTTTAGTGAGCAGAAGATGATATTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR GCA 90 bp | TTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTTCTGTTGGAGAATGTGATCAAAATGAGGTCTTCTaGAAGGTTTTAAAGGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: FILSVLPLGHQLSVGECDQNEVF*KVLKEA Trigger: GGCTTCCTTTAAAACCTTGCAGAAGACCTCATTTTG...ATCACATTCTCCAACAGAAAGTTGATGACCTAAGGGAAGGACTGATAATATAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CCA 90 bp | GGAGGAGGTGGGGGAGGAGGAGGAGGAAGCACCACACTTGGAGCATaGTCTGGTTCCACACTCAGCCCAGTGGTCGCTGATGATGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: GGGGGGGGGSTTLGA*SGSTLSPVVADDGG Trigger: GCCGCCATCATCAGCGACCACTGGGCTGAGTGTGGAACCAGACCATGCTCCAAGTGTGGTGCTTCCTCCTCCTCCTCCCCCACCTCCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CCA 90 bp | GGGAAGAGAACTTGGAGGCTGCAGAGAAAACTGAGGAGGAGGAGGTaGGGGAGGAGGAGGAGGAAGCACCACACTTGGAGCATGGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: GKRTWRLQRKLRRRR*GRRRRKHHTWSMVW Trigger: CCAGACCATGCTCCAAGTGTGGTGCTTCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCAGTTTTCTCTGCAGCCTCCAAGTTCTCTTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CAA 90 bp | CAGGCTGGGTGGAGATGGGTCCTGGGGTACAGCTTGATCACCCTAACAGAGGAGTCTATGTCATGTGTATaGGCAGATCCAGGCTGCATG | + |
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Preference number: 5 (lower is better) Translates to: QAGWRWVLGYSLITLTEESMSCV*ADPGCM Trigger: CATGCAGCCTGGATCTGCCAATACACATGACATAGA...CTCCTCTGTTAGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CAA 90 bp | CCTCATTCCTCAGGCTGGGTGGAGATGGGTCCTGGGGTACAGCTTGATCACCCTGAAGTCTCTGGCTTTTaGAATGATGGCTGTCATCGG | + |
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Preference number: 5 (lower is better) Translates to: PHSSGWVEMGPGVQLDHPEVSGF*NDGCHR Trigger: CCGATGACAGCCATCATTCAAAAAGCCAGAGACTTC...AGGGTGATCAAGCTGTACCCCAGGACCCATCTCCACCCAGCCTGAGGAATGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS TCA 90 bp | ATTAAAGACACTGGATCCCATTCTGAACTCCGTCTCTTCCTCTTCTaGACGGGTCTGCCACCTGGTGACCTTTCCACAGGCCGAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: IKDTGSHSELRLFLF*TGLPPGDLSTGRSL Trigger: CAGACTTCGGCCTGTGGAAAGGTCACCAGGTGGCAGACCCGTTCAGAAGAGGAAGAGACGGAGTTCAGAATGGGATCCAGTGTCTTTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS GCA 90 bp | CAAGTCGATGAAACCAGTCTCTCTGCTCTCTCTCAGGTCCTGCATTaGCACAATCGCAGCAATCTGAGACCGGAGAAAAGTCAGCTCATC | + |
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Preference number: 5 (lower is better) Translates to: QVDETSLSALSQVLH*HNRSNLRPEKSQLI Trigger: GATGAGCTGACTTTTCTCCGGTCTCAGATTGCTGCGATTGTGGCAATGCAGGACCTGAGAGAGAGCAGAGAGACTGGTTTCATCGACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000169712.3 ENSMUST00000217608.2 |
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| CDS-3UTR CAA 90 bp | GGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATGGGTCGATCCCAAGTTAGTTTaGAAGGATAAAAAGGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: GTVFLSVFLIPQAGWRWVDPKLV*KDKKEQ Trigger: TTGCTCCTTTTTATCCTTCAAAACTAACTTGGGATC...GACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CAA 90 bp | GGGACAGTATTCTTAAGTGTCTTCCTCATTCCTCAGGCTGGGTGGAGATGGGTCGTCAAAGGAATCATCTaGAAATGCAAACTTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: GTVFLSVFLIPQAGWRWVVKGII*KCKLLL Trigger: AAGCAGAAGTTTGCATTTCAAGATGATTCCTTTGAC...GACCCATCTCCACCCAGCCTGAGGAATGAGGAAGACACTTAAGAATACTGTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CAA 90 bp | GATAGCCTGGATAACTGCTTTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTCGTCTGTCTCTGTTTaGTTCTGTCTTAGACCAGGT | + |
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Preference number: 5 (lower is better) Translates to: DSLDNCFYIISPSLRSSTSSVSV*FCLRPG Trigger: ACCTGGTCTAAGACAGAACAAAACAGAGACAGACGA...AGTTGATGACCTAAGGGAAGGACTGATAATATAAAAGCAGTTATCCAGGCTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS-3UTR CAA 90 bp | TTTATATTATCAGTCCTTCCCTTAGGTCATCAACTTTCTGTTGGAGAATGTGATGCATGGGAAGAGAACTaGGAGGCTGCAGAGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: FILSVLPLGHQLSVGECDAWEEN*EAAEKT Trigger: AGTTTTCTCTGCAGCCTCCAAGTTCTCTTCCCATGC...ATCACATTCTCCAACAGAAAGTTGATGACCTAAGGGAAGGACTGATAATATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CAA 72 bp | GAGGAGGTGGGGGAGGAGGAGGAGGAAGCACCACACTaGGAGCATGGTCTGGTTCCACACTCAGCCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: EEVGEEEEEAPH*EHGLVPHSAQW Trigger: CCACTGGGCTGAGTGTGGAACCAGACCATGCTCCAAGTGTGGTGCTTCCTCCTCCTCCTCCCCCACCTCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CAA 90 bp | ACTGAGGAGGAGGAGGTGGGGGAGGAGGAGGAGGAAGCACCACACTaGGAGCATGGTCTGGTTCCACACTCAGCCCAGTGGTCGCTGATG | + |
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Preference number: 6 (lower is better) Translates to: TEEEEVGEEEEEAPH*EHGLVPHSAQWSLM Trigger: CATCAGCGACCACTGGGCTGAGTGTGGAACCAGACCATGCTCCAAGTGTGGTGCTTCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CCA 72 bp | ACTTGGAGGCTGCAGAGAAAACTGAGGAGGAGGAGGTaGGGGAGGAGGAGGAGGAAGCACCACACTTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: TWRLQRKLRRRR*GRRRRKHHTWS Trigger: GCTCCAAGTGTGGTGCTTCCTCCTCCTCCTCCCCCACCTCCTCCTCCTCAGTTTTCTCTGCAGCCTCCAAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CCA 72 bp | CACTTGGAGCATGGTCTGGTTCCACACTCAGCCCAGTaGTCGCTGATGATGGCGGCACTTGTTCATCACTCA | + |
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Preference number: 6 (lower is better) Translates to: HLEHGLVPHSAQ*SLMMAALVHHS Trigger: TGAGTGATGAACAAGTGCCGCCATCATCAGCGACCACTGGGCTGAGTGTGGAACCAGACCATGCTCCAAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000169712.3 ENSMUST00000217608.2 |
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| CDS GCA 72 bp | GAAACCAGTCTCTCTGCTCTCTCTCAGGTCCTGCATTaGCACAATCGCAGCAATCTGAGACCGGAGAAAAGT | + |
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Preference number: 6 (lower is better) Translates to: ETSLSALSQVLH*HNRSNLRPEKS Trigger: ACTTTTCTCCGGTCTCAGATTGCTGCGATTGTGGCAATGCAGGACCTGAGAGAGAGCAGAGAGACTGGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000169712.3 ENSMUST00000217608.2 |
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| CDS TCA 72 bp | ATGTTTGGGACATCACGAAGTCTCTGGCTTTTTGAATaGTGGCTGTCATCGGTCTTCTTAACACCTGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: MFGTSRSLWLFE*WLSSVFLTPES Trigger: GCTCTCAGGTGTTAAGAAGACCGATGACAGCCATCATTCAAAAAGCCAGAGACTTCGTGATGTCCCAAACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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| CDS CAA 72 bp | CTCCCAGGAACTATTTTCTCTGTCAAAGGAATCATCTaGAAATGCAAACTTCTGCTTCAGTGCATTAGATAT | + |
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Preference number: 6 (lower is better) Translates to: LPGTIFSVKGII*KCKLLLQCIRY Trigger: ATATCTAATGCACTGAAGCAGAAGTTTGCATTTCAAGATGATTCCTTTGACAGAGAAAATAGTTCCTGGGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169712.3 |
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