RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTFP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004748

Ensembl transcript IDs: ENSMUST00000004868.6

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAAAGACAGGCCCAGCCAGAGTTCGTTCCCACTCAGCACAACCGTaGCCACTGAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACT +
Preference number: 1 (lower is better)
Translates to: QKTGPARVRSHSAQP*PLRQTELGPTSELT
Trigger: AGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAACTCTGGCTGGGCCTGTCTTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 90 bp GTGGCCACTGAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACTaGCACTACTCCTCGGGGCCTTCATCTCTAAGCTCCCATCAATGT +
Preference number: 1 (lower is better)
Translates to: VATEADRIGSHLRTH*HYSSGPSSLSSHQC
Trigger: ACATTGATGGGAGCTTAGAGATGAAGGCCCCGAGGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 90 bp GGTGGGCCCGGGGCTAAGAGGAACTTTAGTGAACAGAGCACTTGCTaGTCTTGCAGAAGAACCAGATTCAGTTCTCAGCACCCGCATGGG +
Preference number: 1 (lower is better)
Translates to: GGPGAKRNFSEQSTC*SCRRTRFSSQHPHG
Trigger: CCCATGCGGGTGCTGAGAACTGAATCTGGTTCTTCTGCAAGAGCAGCAAGTGCTCTGTTCACTAAAGTTCCTCTTAGCCCCGGGCCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 90 bp CCCGGGGCTAAGAGGAACTTTAGTGAACAGAGCACTTGCTGCTCTTaGAGAAGAACCAGATTCAGTTCTCAGCACCCGCATGGGGGTTCA +
Preference number: 1 (lower is better)
Translates to: PGAKRNFSEQSTCCS*RRTRFSSQHPHGGS
Trigger: TGAACCCCCATGCGGGTGCTGAGAACTGAATCTGGTTCTTCTGCAAGAGCAGCAAGTGCTCTGTTCACTAAAGTTCCTCTTAGCCCCGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 90 bp AGCCAGAAGACTGGCTCTCACTTGTCACATGATCTCAGTATTCCCTaGCCTCTCTGGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACT +
Preference number: 1 (lower is better)
Translates to: SQKTGSHLSHDLSIP*PLWALVFFSSMGGT
Trigger: AGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTGAGAGCCAGTCTTCTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CCA 90 bp ACTGGCTCTCACTTGTCACATGATCTCAGTATTCCCTGCCCTCTCTaGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACTAACTTTTCC +
Preference number: 1 (lower is better)
Translates to: TGSHLSHDLSIPCPL*ALVFFSSMGGTNFS
Trigger: GGAAAAGTTAGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTGAGAGCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CAA 90 bp GTTCGTTCCCACTCAGCACAACCGTGGCCACTGAGGCAGACAGAATaGGGTCCCACCTCAGAACTCACTGCCACTACTCCTCGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: VRSHSAQPWPLRQTE*GPTSELTATTPRGL
Trigger: AAGGCCCCGAGGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR-3UTR TCA 90 bp GTTCGTTCCCACTCAGCACAACCGTGGCCACTGAGGCAGACAGAATTGGGTCCCCGTATCCACATTCTTTaGTGTGAGTGGGCCGACCCC +
Preference number: 2 (lower is better)
Translates to: VRSHSAQPWPLRQTELGPRIHIL*CEWADP
Trigger: GGGGTCGGCCCACTCACATCAAAGAATGTGGATACG...GGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR-3UTR GCA 90 bp ACCAGATTCAGTTCTCAGCACCCGCATGGGGGTTCACAAGCATCCCTAACTCCACACCTCAGAACTCACTaGCACTACTCCTCGGGGCCT +
Preference number: 2 (lower is better)
Translates to: TRFSSQHPHGGSQASLTPHLRTH*HYSSGP
Trigger: AGGCCCCGAGGAGTAGTGGCAGTGAGTTCTGAGGTG...TGGAGTTAGGGATGCTTGTGAACCCCCATGCGGGTGCTGAGAACTGAATCTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR-3UTR CCA 90 bp CACTTGTCACATGATCTCAGTATTCCCTGCCCTCTCTGGGCCTTAGTATTCTTCCACTCAGCACAACCGTaGCCACTGAGGCAGACAGAA +
Preference number: 2 (lower is better)
Translates to: HLSHDLSIPCPLWALVFFHSAQP*PLRQTE
Trigger: TTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTG...GAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR-3UTR TCA 90 bp CCTCTTTTAACCTCTAAGGGTTCTGCACATACATACAGACATGCAAGTAAAACAAAGCTCCCATCAATGTaGACCCACCCAGATGGCAGT +
Preference number: 2 (lower is better)
Translates to: PLLTSKGSAHTYRHASKTKLPSM*THPDGS
Trigger: ACTGCCATCTGGGTGGGTTCACATTGATGGGAGCTT...TGTTTTACTTGCATGTCTGTATGTATGTGCAGAACCCTTAGAGGTTAAAAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR TCA 72 bp GGACCCCAAACAGCCACGTATCCACATTCTTTGATGTaGGTGGGCCGACCCCAGGCAAGGCACAGGGCAGGG +
Preference number: 3 (lower is better)
Translates to: GPQTATYPHSLM*VGRPQARHRAG
Trigger: CCCTGCCCTGTGCCTTGCCTGGGGTCGGCCCACTCACATCAAAGAATGTGGATACGTGGCTGTTTGGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CCA 72 bp GGCCCAGCCAGAGTTCGTTCCCACTCAGCACAACCGTaGCCACTGAGGCAGACAGAATTGGGTCCCACCTCA +
Preference number: 3 (lower is better)
Translates to: GPARVRSHSAQP*PLRQTELGPTS
Trigger: TGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAACTCTGGCTGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR TCA 72 bp CTCCTCGGGGCCTTCATCTCTAAGCTCCCATCAATGTaGACCCACCCAGATGGCAGTGCCATGGACCCCAAA +
Preference number: 3 (lower is better)
Translates to: LLGAFISKLPSM*THPDGSAMDPK
Trigger: TTTGGGGTCCATGGCACTGCCATCTGGGTGGGTTCACATTGATGGGAGCTTAGAGATGAAGGCCCCGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 72 bp GAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACTaGCACTACTCCTCGGGGCCTTCATCTCTAAGCTCC +
Preference number: 3 (lower is better)
Translates to: EADRIGSHLRTH*HYSSGPSSLSS
Trigger: GGAGCTTAGAGATGAAGGCCCCGAGGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 72 bp CAGCTCCTGCAACAGGAACAGGCTGGCCAGAGACTCTaGCCTGAGTGTCCCAAATACTGTACCTCTGTATCT +
Preference number: 3 (lower is better)
Translates to: QLLQQEQAGQRL*PECPKYCTSVS
Trigger: AGATACAGAGGTACAGTATTTGGGACACTCAGGGCAGAGTCTCTGGCCAGCCTGTTCCTGTTGCAGGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CCA 72 bp TCCCATCAATGTGAACCCACCCAGATGGCAGTGCCATaGACCCCAAACAGCCACGTATCCACATTCTTTGAT +
Preference number: 3 (lower is better)
Translates to: SHQCEPTQMAVP*TPNSHVSTFFD
Trigger: ATCAAAGAATGTGGATACGTGGCTGTTTGGGGTCCATGGCACTGCCATCTGGGTGGGTTCACATTGATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 72 bp ACTGGCTCTCACTTGTCACATGATCTCAGTATTCCCTaGCCTCTCTGGGCCTTAGTATTCTTCTCTTCCATG +
Preference number: 3 (lower is better)
Translates to: TGSHLSHDLSIP*PLWALVFFSSM
Trigger: CATGGAAGAGAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTGAGAGCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CCA 72 bp CACTTGTCACATGATCTCAGTATTCCCTGCCCTCTCTaGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACT +
Preference number: 3 (lower is better)
Translates to: HLSHDLSIPCPL*ALVFFSSMGGT
Trigger: AGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR TCA 72 bp TCTTTCCCTAAGTCGCTCAGCCACACTACCACAAAGTaGCTTAGAATAGCCAGAAGACTGGCTCTCACTTGT +
Preference number: 3 (lower is better)
Translates to: SFPKSLSHTTTK*LRIARRLALTC
Trigger: ACAAGTGAGAGCCAGTCTTCTGGCTATTCTAAGTCACTTTGTGGTAGTGTGGCTGAGCGACTTAGGGAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR GCA 72 bp AAGAGGAACTTTAGTGAACAGAGCACTTGCTGCTCTTaGAGAAGAACCAGATTCAGTTCTCAGCACCCGCAT +
Preference number: 3 (lower is better)
Translates to: KRNFSEQSTCCS*RRTRFSSQHPH
Trigger: ATGCGGGTGCTGAGAACTGAATCTGGTTCTTCTGCAAGAGCAGCAAGTGCTCTGTTCACTAAAGTTCCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR GCA 90 bp GCCACTGAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACTGCCACTACTCCTGGTGGTGGTCCATTTaGGGACAGTCGGGGGCCAGT +
Preference number: 4 (lower is better)
Translates to: ATEADRIGSHLRTHCHYSWWWSI*GQSGAS
Trigger: ACTGGCCCCCGACTGTCCGCAAATGGACCACCACCA...GGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR GCA 90 bp TTCAGTTCTCAGCACCCGCATGGGGGTTCACAAGCATCCCTAACTCCAGTCCCAGGGCCATTCTGGTGTTaGGGCCTGCTTCAGGGCTTG +
Preference number: 4 (lower is better)
Translates to: FSSQHPHGGSQASLTPVPGPFWC*GLLQGL
Trigger: CAAGCCCTGAAGCAGGCCGCAACACCAGAATGGCCC...TGGGACTGGAGTTAGGGATGCTTGTGAACCCCCATGCGGGTGCTGAGAACTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CCA 90 bp AGCTCCCATCAATGTGAACCCACCCAGATGGCAGTGCCATGGACCCCAAACAGCGCCTGCTTCAGGGCTTaGCACCTCTCCTGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: SSHQCEPTQMAVPWTPNSACFRA*HLSCLL
Trigger: AAGAAGGCAGGAGAGGTGCCAAGCCCTGAAGCAGGC...GCTGTTTGGGGTCCATGGCACTGCCATCTGGGTGGGTTCACATTGATGGGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CCA 90 bp GTTCGTTCCCACTCAGCACAACCGTGGCCACTGAGGCAGACAGAATTGGGTCCCGTTGATGGTGAAGCCTaGGATAGCCACAGAGGCCAG +
Preference number: 4 (lower is better)
Translates to: VRSHSAQPWPLRQTELGPVDGEA*DSHRGQ
Trigger: CTGGCCTCTGTGGCTATCCCAGGCTTCACCATCAAC...GGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CCA 90 bp GTTCGTTCCCACTCAGCACAACCGTGGCCACTGAGGCAGACAGAATTGGGTCCCCCAGCAGTCCAAGTGTaGTGGTGGTCCATTTGCGGA +
Preference number: 4 (lower is better)
Translates to: VRSHSAQPWPLRQTELGPPAVQV*WWSICG
Trigger: TCCGCAAATGGACCACCACCACACTTGGACTGCTGG...GGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTGGGAACGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
3UTR CAA 72 bp CACTCAGCACAACCGTGGCCACTGAGGCAGACAGAATaGGGTCCCACCTCAGAACTCACTGCCACTACTCCT +
Preference number: 4 (lower is better)
Translates to: HSAQPWPLRQTE*GPTSELTATTP
Trigger: AGGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGCCACGGTTGTGCTGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CCA 90 bp CCTCTCTGGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACTAACTTTTCCATCCAGCCAGGGCCATTCTaGTGTTGCGGCCTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: PLWALVFFSSMGGTNFSIQPGPF*CCGLLQ
Trigger: CTGAAGCAGGCCGCAACACCAGAATGGCCCTGGCTG...GATGGAAAAGTTAGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCAGAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR GCA 90 bp GAGGAACTAACTTTTCCATCAGAAGGTGGGCCCGGGGCTAAGAGGAACTTTAGTCCTCTCCTGCCTTCTTaGCTTTGTCTATGGCATCGG +
Preference number: 4 (lower is better)
Translates to: EELTFPSEGGPGAKRNFSPLLPS*LCLWHR
Trigger: CCGATGCCATAGACAAAGGCAAGAAGGCAGGAGAGG...ACTAAAGTTCCTCTTAGCCCCGGGCCCACCTTCTGATGGAAAAGTTAGTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR TCA 90 bp CCTCTTTTAACCTCTAAGGGTTCTGCACATACATACAGACATGCAAGTAAAACAGCTGGGCTTCTCCACTaGCGGGTACAGCTTGCGCAG +
Preference number: 4 (lower is better)
Translates to: PLLTSKGSAHTYRHASKTAGLLH*RVQLAQ
Trigger: CTGCGCAAGCTGTACCCGTCAGTGGAGAAGCCCAGC...TGTTTTACTTGCATGTCTGTATGTATGTGCAGAACCCTTAGAGGTTAAAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR GCA 90 bp TGGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACTAACTTTTCCATCAGAAGGACAGAGGCCAGAGACTaGCACACAAAGGTGTCGACC +
Preference number: 4 (lower is better)
Translates to: WALVFFSSMGGTNFSIRRTEARD*HTKVST
Trigger: GGTCGACACCTTTGTGTGGCAGTCTCTGGCCTCTGT...CCTTCTGATGGAAAAGTTAGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CCA 90 bp CTCTGGGCCTTAGTATTCTTCTCTTCCATGGGAGGAACTAACTTTTCCATCAGATCTTGCCTTTGTCTATaGCATCGGCCAGGACATAGG +
Preference number: 4 (lower is better)
Translates to: LWALVFFSSMGGTNFSIRSCLCL*HRPGHR
Trigger: CCTATGTCCTGGCCGATGCCATAGACAAAGGCAAGA...TCTGATGGAAAAGTTAGTTCCTCCCATGGAAGAGAAGAATACTAAGGCCCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CCA 90 bp CGCAGGCTAGAGTCCAGGAGGAAGTCCACTGACCTGTCGATGGGGTaGATTATGACGGGGATGGCCAGCAGTCCAAGTGTGGTGGTGGTC +
Preference number: 5 (lower is better)
Translates to: RRLESRRKSTDLSMG*IMTGMASSPSVVVV
Trigger: GACCACCACCACACTTGGACTGCTGGCCATCCCCGTCATAATCCACCCCATCGACAGGTCAGTGGACTTCCTCCTGGACTCTAGCCTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CAA 90 bp TCTCTAAGCTCCCATCAATGTGAACCCACCCAGATGGCAGTGCCATGGACCCCAGTGGTGGTGGTCCATTaGCGGACAGTCGGGGGCCAG +
Preference number: 5 (lower is better)
Translates to: SLSSHQCEPTQMAVPWTPVVVVH*RTVGGQ
Trigger: CTGGCCCCCGACTGTCCGCAAATGGACCACCACCAC...TGGGGTCCATGGCACTGCCATCTGGGTGGGTTCACATTGATGGGAGCTTAGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS GCA 90 bp CAGGACATAGGAGCTGGACACACCATAGCTCAACCACACCACAGCTaGAGGAACCAGCGAGCGGAAAGCCTCCCCCACCTCATTGGCGTA +
Preference number: 5 (lower is better)
Translates to: QDIGAGHTIAQPHHS*RNQRAESLPHLIGV
Trigger: TACGCCAATGAGGTGGGGGAGGCTTTCCGCTCGCTGGTTCCTGCAGCTGTGGTGTGGTTGAGCTATGGTGTGTCCAGCTCCTATGTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS GCA 90 bp TGGTGTTGCGGCCTGCTTCAGGGCTTGGCACCTCTCCTGCCTTCTTaGCTTTGTCTATGGCATCGGCCAGGACATAGGAGCTGGACACAC +
Preference number: 5 (lower is better)
Translates to: WCCGLLQGLAPLLPS*LCLWHRPGHRSWTH
Trigger: GTGTGTCCAGCTCCTATGTCCTGGCCGATGCCATAGACAAAGGCAAGAAGGCAGGAGAGGTGCCAAGCCCTGAAGCAGGCCGCAACACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CAA 90 bp GCCACTGAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACTGCCACTACTCCCCTGCCTTCTTGCCTTaGTCTATGGCATCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: ATEADRIGSHLRTHCHYSPAFLP*SMASAR
Trigger: CCTGGCCGATGCCATAGACAAAGGCAAGAAGGCAGG...GGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CCA 90 bp CTGCCTTCTTGCCTTTGTCTATGGCATCGGCCAGGACATAGGAGCTaGACACACCATAGCTCAACCACACCACAGCTGCAGGAACCAGCG +
Preference number: 5 (lower is better)
Translates to: LPSCLCLWHRPGHRS*THHSSTTPQLQEPA
Trigger: CGCTGGTTCCTGCAGCTGTGGTGTGGTTGAGCTATGGTGTGTCCAGCTCCTATGTCCTGGCCGATGCCATAGACAAAGGCAAGAAGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CCA 90 bp CAAGACATAGAGAGAGGCAGCACACAGACGGTTGATGGTGAAGCCTaGGATAGCCACAGAGGCCAGAGACTGCCACACAAAGGTGTCGAC +
Preference number: 5 (lower is better)
Translates to: QDIERGSTQTVDGEA*DSHRGQRLPHKGVD
Trigger: GTCGACACCTTTGTGTGGCAGTCTCTGGCCTCTGTGGCTATCCCAGGCTTCACCATCAACCGTCTGTGTGCTGCCTCTCTCTATGTCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CAA 90 bp GCCACTGAGGCAGACAGAATTGGGTCCCACCTCAGAACTCACTGCCACTACTCCACCTCTCCTGCCTTCTaGCCTTTGTCTATGGCATCG +
Preference number: 5 (lower is better)
Translates to: ATEADRIGSHLRTHCHYSTSPAF*PLSMAS
Trigger: CGATGCCATAGACAAAGGCAAGAAGGCAGGAGAGGT...GGAGTAGTGGCAGTGAGTTCTGAGGTGGGACCCAATTCTGTCTGCCTCAGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CAA 90 bp CACTTGTCACATGATCTCAGTATTCCCTGCCCTCTCTGGGCCTTAGTATTCTTCGGCCTGCTTCAGGGCTaGGCACCTCTCCTGCCTTCT +
Preference number: 5 (lower is better)
Translates to: HLSHDLSIPCPLWALVFFGLLQG*APLLPS
Trigger: AGAAGGCAGGAGAGGTGCCAAGCCCTGAAGCAGGCC...GAAGAATACTAAGGCCCAGAGAGGGCAGGGAATACTGAGATCATGTGACAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS-3UTR CAA 90 bp CCTCTTTTAACCTCTAAGGGTTCTGCACATACATACAGACATGCAAGTAAAACAAGGGCCATTCTGGTGTaGCGGCCTGCTTCAGGGCTT +
Preference number: 5 (lower is better)
Translates to: PLLTSKGSAHTYRHASKTRAILV*RPASGL
Trigger: AAGCCCTGAAGCAGGCCGCAACACCAGAATGGCCCT...TGTTTTACTTGCATGTCTGTATGTATGTGCAGAACCCTTAGAGGTTAAAAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS GCA 72 bp GGAGCTGGACACACCATAGCTCAACCACACCACAGCTaGAGGAACCAGCGAGCGGAAAGCCTCCCCCACCTC +
Preference number: 6 (lower is better)
Translates to: GAGHTIAQPHHS*RNQRAESLPHL
Trigger: GAGGTGGGGGAGGCTTTCCGCTCGCTGGTTCCTGCAGCTGTGGTGTGGTTGAGCTATGGTGTGTCCAGCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CAA 72 bp GGGATGGCCAGCAGTCCAAGTGTGGTGGTGGTCCATTaGCGGACAGTCGGGGGCCAGTGGGTCATAGTACCC +
Preference number: 6 (lower is better)
Translates to: GMASSPSVVVVH*RTVGGQWVIVP
Trigger: GGGTACTATGACCCACTGGCCCCCGACTGTCCGCAAATGGACCACCACCACACTTGGACTGCTGGCCATCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CAA 72 bp CAGGGGGTGCTGGGCTTCTCCACTGACGGGTACAGCTaGCGCAGGCTAGAGTCCAGGAGGAAGTCCACTGAC +
Preference number: 6 (lower is better)
Translates to: QGVLGFSTDGYS*RRLESRRKSTD
Trigger: GTCAGTGGACTTCCTCCTGGACTCTAGCCTGCGCAAGCTGTACCCGTCAGTGGAGAAGCCCAGCACCCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CCA 72 bp GAGTCCAGGAGGAAGTCCACTGACCTGTCGATGGGGTaGATTATGACGGGGATGGCCAGCAGTCCAAGTGTG +
Preference number: 6 (lower is better)
Translates to: ESRRKSTDLSMG*IMTGMASSPSV
Trigger: CACACTTGGACTGCTGGCCATCCCCGTCATAATCCACCCCATCGACAGGTCAGTGGACTTCCTCCTGGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6
CDS CCA 72 bp TGCCTTTGTCTATGGCATCGGCCAGGACATAGGAGCTaGACACACCATAGCTCAACCACACCACAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: CLCLWHRPGHRS*THHSSTTPQLQ
Trigger: CTGCAGCTGTGGTGTGGTTGAGCTATGGTGTGTCCAGCTCCTATGTCCTGGCCGATGCCATAGACAAAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004868.6