RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTFMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059183

Ensembl transcript IDs: ENSMUST00000074792.7

Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCCCTGGGCAGGCCTTAAACATGCTTGGTAGTGATGCCTTGAACTaGTCCTCCCGCCTTCATCTTCCAAGTACTGGGACTACAGCACTG +
Preference number: 1 (lower is better)
Translates to: SPGQALNMLGSDALN*SSRLHLPSTGTTAL
Trigger: CAGTGCTGTAGTCCCAGTACTTGGAAGATGAAGGCGGGAGGATCAGTTCAAGGCATCACTACCAAGCATGTTTAAGGCCTGCCCAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 90 bp CCCTTGACTGCTACACACAATGGAGAGCGAAAGACTTCCGCCTCCTaGCAACCACTTCTCTTTCTCCCACGCTGTCATCTTCTTGCTTGT +
Preference number: 1 (lower is better)
Translates to: PLTATHNGERKTSAS*QPLLFLPRCHLLAC
Trigger: ACAAGCAAGAAGATGACAGCGTGGGAGAAAGAGAAGTGGTTGTCAGGAGGCGGAAGTCTTTCGCTCTCCATTGTGTGTAGCAGTCAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CCA 90 bp GCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTA +
Preference number: 1 (lower is better)
Translates to: ASDLIPDGCEPPCGC*ELNSGPLEEQSVFL
Trigger: TAAGAACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATCTGATGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CCA 90 bp TGTGTGATTCAAGTAGAAAAGTCCGCCCTTGACTGCTACACACAATaGAGAGCGAAAGACTTCCGCCTCCTGACAACCACTTCTCTTTCT +
Preference number: 1 (lower is better)
Translates to: CVIQVEKSALDCYTQ*RAKDFRLLTTTSLS
Trigger: AGAAAGAGAAGTGGTTGTCAGGAGGCGGAAGTCTTTCGCTCTCCATTGTGTGTAGCAGTCAAGGGCGGACTTTTCTACTTGAATCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR TCA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACGTTCCTGCTTCTGCTaGGTGCTGGGACTACAGGTG +
Preference number: 2 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSRSCFC*VLGLQV
Trigger: CACCTGTAGTCCCAGCACTCAGCAGAAGCAGGAACG...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR TCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATGAACTCGCGGACAGCTaGGGATGCCCTTCAACTTCT +
Preference number: 2 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHELADS*GCPSTS
Trigger: AGAAGTTGAAGGGCATCCTCAGCTGTCCGCGAGTTC...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CAA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTCTTAACCGCT +
Preference number: 2 (lower is better)
Translates to: DLIPDGCEPPCGCWE*NSGPLEEQSVFLTA
Trigger: AGCGGTTAAGAACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR TCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCAAAGTATTCTACCAACTaGGCCCCACCCCAAGCCGGA +
Preference number: 2 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISKYSTN*APPQAG
Trigger: TCCGGCTTGGGGTGGGGCTCAGTTGGTAGAATACTT...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR GCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCACCTGCTTCTGCTGAGTaGTGGGACTACAGGTGTGCA +
Preference number: 2 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISPASAE*WDYRCA
Trigger: TGCACACCTGTAGTCCCAGCACTCAGCAGAAGCAGG...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR CCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATGTGTGCACCACTATCTaGATTATGAGGTGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHVCTTI*IMRCWG
Trigger: TCCCCAGCACCTCATAATCCAGATAGTGGTGCACAC...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR CCA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTGACTGCTACACACAATaGAGAGCGAAAGACTTCCGC +
Preference number: 2 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSDCYTQ*RAKDFR
Trigger: GCGGAAGTCTTTCGCTCTCCATTGTGTGTAGCAGTC...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR-3UTR CCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATTCATCTTCCAAGTACTaGGACTACAGCACTGTGTAC +
Preference number: 2 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHSSSKY*DYSTVY
Trigger: GTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 72 bp AGCACTGTGTACACACTAGGCAAGTATTCTACCAACTaGGCCCCACCCCAAGCCGGAGTCCAGTTTCAAGTC +
Preference number: 3 (lower is better)
Translates to: STVYTLGKYSTN*APPQAGVQFQV
Trigger: GACTTGAAACTGGACTCCGGCTTGGGGTGGGGCTCAGTTGGTAGAATACTTGCCTAGTGTGTACACAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 72 bp TGCTGGGACTACAGGTGTGCACCACTATCTGGATTATaGGGTGCTGGGGATCGAACTCAGAACTTCACCATG +
Preference number: 3 (lower is better)
Translates to: CWDYRCAPLSGL*GAGDRTQNFTM
Trigger: CATGGTGAAGTTCTGAGTTCGATCCCCAGCACCTCATAATCCAGATAGTGGTGCACACCTGTAGTCCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CCA 72 bp CAAGTAGAAAAGTCCGCCCTTGACTGCTACACACAATaGAGAGCGAAAGACTTCCGCCTCCTGACAACCACT +
Preference number: 3 (lower is better)
Translates to: QVEKSALDCYTQ*RAKDFRLLTTT
Trigger: AGTGGTTGTCAGGAGGCGGAAGTCTTTCGCTCTCCATTGTGTGTAGCAGTCAAGGGCGGACTTTTCTACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CCA 72 bp CTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCA +
Preference number: 3 (lower is better)
Translates to: LIPDGCEPPCGC*ELNSGPLEEQS
Trigger: TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 72 bp CAGGCCTTAAACATGCTTGGTAGTGATGCCTTGAACTaGTCCTCCCGCCTTCATCTTCCAAGTACTGGGACT +
Preference number: 3 (lower is better)
Translates to: QALNMLGSDALN*SSRLHLPSTGT
Trigger: AGTCCCAGTACTTGGAAGATGAAGGCGGGAGGATCAGTTCAAGGCATCACTACCAAGCATGTTTAAGGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 72 bp CCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTaGGCCACCATGTGGTTGCTGGGAATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEEGIRSHSRWL*ATMWLLGIELR
Trigger: CCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR TCA 72 bp AACTTCTTGTGTGATTCAAGTAGAAAAGTCCGCCCTTaGCTGCTACACACAATGGAGAGCGAAAGACTTCCG +
Preference number: 3 (lower is better)
Translates to: NFLCDSSRKVRP*LLHTMESERLP
Trigger: CGGAAGTCTTTCGCTCTCCATTGTGTGTAGCAGTCAAGGGCGGACTTTTCTACTTGAATCACACAAGAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp GAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCTTTGCTCCTCCCACTTaGCACAGCTGGTGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: EEQSVFLTAEPSLQPWAGFAPPT*HSWCQQ
Trigger: CTGCTGGCACCAGCTGTGTCAAGTGGGAGGAGCAAA...GCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAACACTGACTGCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp GAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCCAGAGCGTCTGCAGTaGGACTATATCCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: EEQSVFLTAEPSLQPWAGPERLQ*DYIPNG
Trigger: GCCATTGGGGATATAGTCCCACTGCAGACGCTCTGG...GCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAACACTGACTGCTCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp GAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCGGAAGTCTGAGAGTCTaGAATCTGCACTGGCTTGGG +
Preference number: 4 (lower is better)
Translates to: EEQSVFLTAEPSLQPWAGGSLRV*NLHWLG
Trigger: CCCAAGCCAGTGCAGATTTCAGACTCTCAGACTTCC...GCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAACACTGACTGCTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACCGTCTCTGGCGGCGTaGAGCGCCCGCAGCGTTTCC +
Preference number: 4 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSPSLAA*SARSVS
Trigger: GGAAACGCTGCGGGCGCTGCACGCCGCCAGAGACGG...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCACCTCTTTGCCGTCTCTaGCGGCGTGCAGCGCCCGCA +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISPLCRL*RRAAPA
Trigger: TGCGGGCGCTGCACGCCGCCAGAGACGGCAAAGAGG...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp TTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCTTAAACATGCTTGGTTAACTTTTCCTCTTTaGCGTCTCTGGCGGCGTGCA +
Preference number: 4 (lower is better)
Translates to: FLTAEPSLQPWAGLKHAWLTFPL*RLWRRA
Trigger: TGCACGCCGCCAGAGACGGCAAAGAGGAAAAGTTAA...CCAAGCATGTTTAAGGCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp TTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCTTAAACATGCTTGGCCTTTGATGTGCTCTTaGGAGGCACAGGGATGGTTT +
Preference number: 4 (lower is better)
Translates to: FLTAEPSLQPWAGLKHAWPLMCS*EAQGWF
Trigger: AAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGG...CCAAGCATGTTTAAGGCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp GAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCTGCTGCATCTTTGTTaGAAGTCTGAGAGTCTGAAA +
Preference number: 4 (lower is better)
Translates to: EEQSVFLTAEPSLQPWAGLLHLC*KSESLK
Trigger: TTTCAGACTCTCAGACTTCCAACAAAGATGCAGCAG...GCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAACACTGACTGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
3UTR CAA 72 bp CCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATaGAACTCAGGACCTCTGGAAGAGCAGTCAGTGTTC +
Preference number: 4 (lower is better)
Translates to: PDGCEPPCGCWE*NSGPLEEQSVF
Trigger: GAACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATCTGCACTGGCTTGGGTaGGCGTGGGAATTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHLHWLG*AWEFFW
Trigger: CCAGAAAAATTCCCACGCTCACCCAAGCCAGTGCAG...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp TTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCTTAAACATGCTTGGTCTTTGTTGGAAGTCTaGGAGTCTGAAATCTGCACT +
Preference number: 4 (lower is better)
Translates to: FLTAEPSLQPWAGLKHAWSLLEV*ESEICT
Trigger: AGTGCAGATTTCAGACTCTCAGACTTCCAACAAAGA...CCAAGCATGTTTAAGGCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATTGACAGGAACAGCGTaGCCTCCTTCCCATCAGCCA +
Preference number: 4 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSLTGTA*PPSHQP
Trigger: TGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAA...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATACCTCGGGAGGCAACTaGGGTGCACATTCAGTATGC +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHTSGGN*GAHSVC
Trigger: GCATACTGAATGTGCACCCCAGTTGCCTCCCGAGGT...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp GAAGAGCAGTCAGTGTTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCTTCCTGCTGGAGAATTaGGCCTATATCAAATCTTTT +
Preference number: 4 (lower is better)
Translates to: EEQSVFLTAEPSLQPWAGFLLEN*AYIKSF
Trigger: AAAAGATTTGATATAGGCCCAATTCTCCAGCAGGAA...GCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAACACTGACTGCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCATGTCACTCCCTCGGCTaGCTGCGGCCTTCCATTGTT +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISCHSLG*LRPSIV
Trigger: AACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGACA...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATTGGGAGGCACAGGGATaGTTTCCTGCTGGAGAATTG +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHWEAQG*FPAGEL
Trigger: CAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCA...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATACTTGCTCTGAGGTTTaGTCCTCCCACTTGACACAG +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHTCSEV*SSHLTQ
Trigger: CTGTGTCAAGTGGGAGGAGCAAACCTCAGAGCAAGT...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCATGCTTCCAATTCCTTTaGTGTGCTCTTGGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISCFQFL*CALGRH
Trigger: GTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCA...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAACAGGGATGGTTTCCTaGTGGAGAATTGGGCCTATA +
Preference number: 4 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSTGMVS*WRIGPI
Trigger: TATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGT...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATGGGATGGTTTCCTGCTaGAGAATTGGGCCTATATCA +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHGMVSC*RIGPIS
Trigger: TGATATAGGCCCAATTCTCCAGCAGGAAACCATCCC...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTTCCCCAATGGCAAGGTaGAGTCTGAGTACTTGCTCT +
Preference number: 4 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSSPMAR*SLSTCS
Trigger: AGAGCAAGTACTCAGACTTCACCTTGCCATTGGGGA...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTCCAATTCCTTTGATGTaGTCTTGGGAGGCACAGGGA +
Preference number: 4 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSPIPLM*SWEAQG
Trigger: TCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGG...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCAGTTGGCACCAAGTTTTaGCAACACTGCTTCCAATTC +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISVGTKF*QHCFQF
Trigger: GAATTGGAAGCAGTGTTGTCAAAACTTGGTGCCAAC...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR TCA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATCAGATTTTTCAAAACTaGGATAAGCATGTTGGCACC +
Preference number: 4 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHQIFQN*DKHVGT
Trigger: GGTGCCAACATGCTTATCTCAGTTTTGAAAAATCTG...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCAGCGTGGGAATTTTTCTaGTACCACGCATGCAAATAT +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISAWEFF*YHACKY
Trigger: ATATTTGCATGCGTGGTACCAGAAAAATTCCCACGC...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CCA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTAAATCTGCACTGGCTTaGGTGAGCGTGGGAATTTTT +
Preference number: 4 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSKSALA*VSVGIF
Trigger: AAAAATTCCCACGCTCACCCAAGCCAGTGCAGATTT...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR GCA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCAAACAACTTTGTTTTCTaGTGCATCTTTGTTGGAAGT +
Preference number: 4 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISNNFVF*CIFVGS
Trigger: ACTTCCAACAAAGATGCAGCAGAAAACAAAGTTGTT...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS GCA 90 bp TGGCGGCGTGCAGCGCCCGCAGCGTTTCCCGGGCAAAGTGGTCGGTaGCGAGGAACAGCACCCGCCAAGGCGGCTTCTCGCGGACTCGGG +
Preference number: 5 (lower is better)
Translates to: WRRAAPAAFPGQSGR*RGTAPAKAASRGLG
Trigger: CCCGAGTCCGCGAGAAGCCGCCTTGGCGGGTGCTGTTCCTCGGCACCGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGCACGCCGCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp CCGTCTCTGGCGGCGTGCAGCGCCCGCAGCGTTTCCCGGGCAAAGTaGTCGGTGCCGAGGAACAGCACCCGCCAAGGCGGCTTCTCGCGG +
Preference number: 5 (lower is better)
Translates to: PSLAACSARSVSRAK*SVPRNSTRQGGFSR
Trigger: CCGCGAGAAGCCGCCTTGGCGGGTGCTGTTCCTCGGCACCGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGCACGCCGCCAGAGACGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp GCCGTCCTTCCCGTCGAACCCGGCAGGTGCTTGACAGGAACAGCGTaGCCTCCTTCCCATCAGCCACCGACCCCAGCAGCACCGCGGAAG +
Preference number: 5 (lower is better)
Translates to: AVLPVEPGRCLTGTA*PPSHQPPTPAAPRK
Trigger: CTTCCGCGGTGCTGCTGGGGTCGGTGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAAGCACCTGCCGGGTTCGACGGGAAGGACGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp GCTGGTGCCAGCAGAGACCTTGGGGGCATATGTCACTCCCTCGGCTaGCTGCGGCCTTCCATTGTTCAGACTTTCGGGCAGATTTTTCAA +
Preference number: 5 (lower is better)
Translates to: AGASRDLGGICHSLG*LRPSIVQTFGQIFQ
Trigger: TTGAAAAATCTGCCCGAAAGTCTGAACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGACATATGCCCCCAAGGTCTCTGCTGGCACCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TTCTTAACCGCTGAGCCCTCTCTCCAGCCCTGGGCAGGCCTTAAACATGCTTGGTCCTTTGATGTGCTCTaGGGAGGCACAGGGATGGTT +
Preference number: 5 (lower is better)
Translates to: FLTAEPSLQPWAGLKHAWSFDVL*GGTGMV
Trigger: AACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGA...CCAAGCATGTTTAAGGCCTGCCCAGGGCTGGAGAGAGGGCTCAGCGGTTAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 90 bp TTGGGTCTAATTTGCATAATCGTTACGCCAGTGACAGTGTCTCCATaGAGCACCGTGTGGATTATCGGAGCGGGACCACGCCACCTCGGG +
Preference number: 5 (lower is better)
Translates to: LGLICIIVTPVTVSP*STVWIIGAGPRHLG
Trigger: CCCGAGGTGGCGTGGTCCCGCTCCGATAATCCACACGGTGCTTCATGGAGACACTGTCACTGGCGTAACGATTATGCAAATTAGACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCAGAACCCGGCAGGTGCTaGACAGGAACAGCGTGGCCT +
Preference number: 5 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISEPGRC*TGTAWP
Trigger: AGGCCACGCTGTTCCTGTCAAGCACCTGCCGGGTTC...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 90 bp TCCATCCAGAGCGTCTGCAGTGGGACTATATCCCCAATGGCAAGGTaGAGTCTGAGTACTTGCTCTGAGGTTTGCTCCTCCCACTTGACA +
Preference number: 5 (lower is better)
Translates to: SIQSVCSGTISPMAR*SLSTCSEVCSSHLT
Trigger: TGTCAAGTGGGAGGAGCAAACCTCAGAGCAAGTACTCAGACTTCACCTTGCCATTGGGGATATAGTCCCACTGCAGACGCTCTGGATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGCGAACCAGCAGCATTaGCGATGGTCTGTGGTACAC +
Preference number: 5 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSANQQH*RWSVVH
Trigger: GTGTACCACAGACCATCGCAAATGCTGCTGGTTCGC...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp GAGATCCAGAAGTTTAACGGTGTTCTCCATCCAGAGCGTCTGCAGTaGGACTATATCCCCAATGGCAAGGTGAAGTCTGAGTACTTGCTC +
Preference number: 5 (lower is better)
Translates to: EIQKFNGVLHPERLQ*DYIPNGKVKSEYLL
Trigger: GAGCAAGTACTCAGACTTCACCTTGCCATTGGGGATATAGTCCCACTGCAGACGCTCTGGATGGAGAACACCGTTAAACTTCTGGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp ACACTGCTTCCAATTCCTTTGATGTGCTCTTGGGAGGCACAGGGATaGTTTCCTGCTGGAGAATTGGGCCTATATCAAATCTTTTGGGTC +
Preference number: 5 (lower is better)
Translates to: TLLPIPLMCSWEAQG*FPAGELGLYQIFWV
Trigger: GACCCAAAAGATTTGATATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp CACCAAGTTTTGACAACACTGCTTCCAATTCCTTTGATGTGCTCTTaGGAGGCACAGGGATGGTTTCCTGCTGGAGAATTGGGCCTATAT +
Preference number: 5 (lower is better)
Translates to: HQVLTTLLPIPLMCS*EAQGWFPAGELGLY
Trigger: ATATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGTTGTCAAAACTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 90 bp CTGCATCTTTGTTGGAAGTCTGAGAGTCTGAAATCTGCACTGGCTTaGGTGAGCGTGGGAATTTTTCTGGTACCACGCATGCAAATATCC +
Preference number: 5 (lower is better)
Translates to: LHLCWKSESLKSALA*VSVGIFLVPRMQIS
Trigger: GGATATTTGCATGCGTGGTACCAGAAAAATTCCCACGCTCACCCAAGCCAGTGCAGATTTCAGACTCTCAGACTTCCAACAAAGATGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAAGGCATCAGATCTCACTGCTTCCAATTCCTTaGATGTGCTCTTGGGAGGCA +
Preference number: 5 (lower is better)
Translates to: CEYTVAVFRHTRRRHQISLLPIP*MCSWEA
Trigger: TGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAG...TGAGATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp GATCTCATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGTTGGCACCAAGTTTaGACAACACTGCTTCCAATT +
Preference number: 5 (lower is better)
Translates to: DLIPDGCEPPCGCWELNSCWHQV*TTLLPI
Trigger: AATTGGAAGCAGTGTTGTCAAAACTTGGTGCCAACA...TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGGAATGAGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 90 bp TGCATAGCAACAACTTTGTTTTCTGCTGCATCTTTGTTGGAAGTCTaGGAGTCTGAAATCTGCACTGGCTTGGGTGAGCGTGGGAATTTT +
Preference number: 5 (lower is better)
Translates to: CIATTLFSAASLLEV*ESEICTGLGERGNF
Trigger: AAAATTCCCACGCTCACCCAAGCCAGTGCAGATTTCAGACTCTCAGACTTCCAACAAAGATGCAGCAGAAAACAAAGTTGTTGCTATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp AGACACACCAGAAGAAGGCATCAGATCTCATTCCAGATGGTTGTGAGCCACCATTCTTTTGGGTCTAATTaGCATAATCGTTACGCCAGT +
Preference number: 5 (lower is better)
Translates to: RHTRRRHQISFQMVVSHHSFGSN*HNRYAS
Trigger: ACTGGCGTAACGATTATGCAAATTAGACCCAAAAGA...ATGGTGGCTCACAACCATCTGGAATGAGATCTGATGCCTTCTTCTGGTGTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTACTGAGATAAGCATGTaGGCACCAAGTTTTGACAAC +
Preference number: 5 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSTEISM*APSFDN
Trigger: GTTGTCAAAACTTGGTGCCAACATGCTTATCTCAGT...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTTGCATAGCAACAACTTaGTTTTCTGCTGCATCTTTG +
Preference number: 5 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSCIATT*FSAASL
Trigger: CAAAGATGCAGCAGAAAACAAAGTTGTTGCTATGCA...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS-3UTR CAA 90 bp TCATCTTCCAAGTACTGGGACTACAGCACTGTGTACACACTAGGCAAGTATTCTCTACTTAATGCACTGTaGCATAGCAACAACTTTGTT +
Preference number: 5 (lower is better)
Translates to: SSSKYWDYSTVYTLGKYSLLNAL*HSNNFV
Trigger: AACAAAGTTGTTGCTATGCAACAGTGCATTAAGTAG...AGAATACTTGCCTAGTGTGTACACAGTGCTGTAGTCCCAGTACTTGGAAGATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp GCGGCGTGCAGCGCCCGCAGCGTTTCCCGGGCAAAGTaGTCGGTGCCGAGGAACAGCACCCGCCAAGGCGGC +
Preference number: 6 (lower is better)
Translates to: AACSARSVSRAK*SVPRNSTRQGG
Trigger: GCCGCCTTGGCGGGTGCTGTTCCTCGGCACCGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGCACGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS GCA 72 bp GCAGCGCCCGCAGCGTTTCCCGGGCAAAGTGGTCGGTaGCGAGGAACAGCACCCGCCAAGGCGGCTTCTCGC +
Preference number: 6 (lower is better)
Translates to: AAPAAFPGQSGR*RGTAPAKAASR
Trigger: GCGAGAAGCCGCCTTGGCGGGTGCTGTTCCTCGGCACCGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 72 bp CCTCGGCCGTCCTTCCCGTCGAACCCGGCAGGTGCTTaGCAGGAACAGCGTGGCCTCCTTCCCATCAGCCAC +
Preference number: 6 (lower is better)
Translates to: PRPSFPSNPAGA*QEQRGLLPISH
Trigger: GTGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAAGCACCTGCCGGGTTCGACGGGAAGGACGGCCGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp CCCGTCGAACCCGGCAGGTGCTTGACAGGAACAGCGTaGCCTCCTTCCCATCAGCCACCGACCCCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: PVEPGRCLTGTA*PPSHQPPTPAA
Trigger: TGCTGCTGGGGTCGGTGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAAGCACCTGCCGGGTTCGACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp ACCTCGGCCGTCCTTCCCGTCGAACCCGGCAGGTGCTaGACAGGAACAGCGTGGCCTCCTTCCCATCAGCCA +
Preference number: 6 (lower is better)
Translates to: TSAVLPVEPGRC*TGTAWPPSHQP
Trigger: TGGCTGATGGGAAGGAGGCCACGCTGTTCCTGTCAAGCACCTGCCGGGTTCGACGGGAAGGACGGCCGAGGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp TCCTCCCACTTGACACAGCTGGTGCCAGCAGAGACCTaGGGGGCATATGTCACTCCCTCGGCTGGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: SSHLTQLVPAET*GAYVTPSAGCG
Trigger: GCCGCAGCCAGCCGAGGGAGTGACATATGCCCCCAAGGTCTCTGCTGGCACCAGCTGTGTCAAGTGGGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS GCA 72 bp TCAATTAACTTTTCCTCTTTGCCGTCTCTGGCGGCGTaGAGCGCCCGCAGCGTTTCCCGGGCAAAGTGGTCG +
Preference number: 6 (lower is better)
Translates to: SINFSSLPSLAA*SARSVSRAKWS
Trigger: CGACCACTTTGCCCGGGAAACGCTGCGGGCGCTGCACGCCGCCAGAGACGGCAAAGAGGAAAAGTTAATTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp AGCAGAGACCTTGGGGGCATATGTCACTCCCTCGGCTaGCTGCGGCCTTCCATTGTTCAGACTTTCGGGCAG +
Preference number: 6 (lower is better)
Translates to: SRDLGGICHSLG*LRPSIVQTFGQ
Trigger: CTGCCCGAAAGTCTGAACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGACATATGCCCCCAAGGTCTCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS GCA 72 bp GAGACCTTGGGGGCATATGTCACTCCCTCGGCTGGCTaGGGCCTTCCATTGTTCAGACTTTCGGGCAGATTT +
Preference number: 6 (lower is better)
Translates to: ETLGAYVTPSAG*GLPLFRLSGRF
Trigger: AAATCTGCCCGAAAGTCTGAACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGACATATGCCCCCAAGGTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp ACCGATCCAGCCATCCTTACAGCGAACCAGCAGCATTaGCGATGGTCTGTGGTACACCACGAACCCCGGAGT +
Preference number: 6 (lower is better)
Translates to: TDPAILTANQQH*RWSVVHHEPRS
Trigger: ACTCCGGGGTTCGTGGTGTACCACAGACCATCGCAAATGCTGCTGGTTCGCTGTAAGGATGGCTGGATCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 72 bp ATCCCCAATGGCAAGGTGAAGTCTGAGTACTTGCTCTaGGGTTTGCTCCTCCCACTTGACACAGCTGGTGCC +
Preference number: 6 (lower is better)
Translates to: IPNGKVKSEYLL*GLLLPLDTAGA
Trigger: GGCACCAGCTGTGTCAAGTGGGAGGAGCAAACCTCAGAGCAAGTACTCAGACTTCACCTTGCCATTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 72 bp ATTTGCATAATCGTTACGCCAGTGACAGTGTCTCCATaGAGCACCGTGTGGATTATCGGAGCGGGACCACGC +
Preference number: 6 (lower is better)
Translates to: ICIIVTPVTVSP*STVWIIGAGPR
Trigger: GCGTGGTCCCGCTCCGATAATCCACACGGTGCTTCATGGAGACACTGTCACTGGCGTAACGATTATGCAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS TCA 72 bp AGCGTCTGCAGTGGGACTATATCCCCAATGGCAAGGTaGAGTCTGAGTACTTGCTCTGAGGTTTGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SVCSGTISPMAR*SLSTCSEVCSS
Trigger: GGAGGAGCAAACCTCAGAGCAAGTACTCAGACTTCACCTTGCCATTGGGGATATAGTCCCACTGCAGACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp GCATATGTCACTCCCTCGGCTGGCTGCGGCCTTCCATaGTTCAGACTTTCGGGCAGATTTTTCAAAACTGAG +
Preference number: 6 (lower is better)
Translates to: AYVTPSAGCGLP*FRLSGRFFKTE
Trigger: CTCAGTTTTGAAAAATCTGCCCGAAAGTCTGAACAATGGAAGGCCGCAGCCAGCCGAGGGAGTGACATATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp AAGTTTAACGGTGTTCTCCATCCAGAGCGTCTGCAGTaGGACTATATCCCCAATGGCAAGGTGAAGTCTGAG +
Preference number: 6 (lower is better)
Translates to: KFNGVLHPERLQ*DYIPNGKVKSE
Trigger: CTCAGACTTCACCTTGCCATTGGGGATATAGTCCCACTGCAGACGCTCTGGATGGAGAACACCGTTAAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 90 bp GCACCAAGTTTTGACAACACTGCTTCCAATTCCTTTGATGTGCTCTaGGGAGGCACAGGGATGGTTTCCTGCTGGAGAATTGGGCCTATA +
Preference number: 6 (lower is better)
Translates to: APSFDNTASNSFDVL*GGTGMVSCWRIGPI
Trigger: TATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGTTGTCAAAACTTGGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp CCAATTCCTTTGATGTGCTCTTGGGAGGCACAGGGATaGTTTCCTGCTGGAGAATTGGGCCTATATCAAATC +
Preference number: 6 (lower is better)
Translates to: PIPLMCSWEAQG*FPAGELGLYQI
Trigger: GATTTGATATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp TTGACAACACTGCTTCCAATTCCTTTGATGTGCTCTTaGGAGGCACAGGGATGGTTTCCTGCTGGAGAATTG +
Preference number: 6 (lower is better)
Translates to: LTTLLPIPLMCS*EAQGWFPAGEL
Trigger: CAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGTTGTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp TGGCACCAAGTTTTGACAACACTGCTTCCAATTCCTTaGATGTGCTCTTGGGAGGCACAGGGATGGTTTCCT +
Preference number: 6 (lower is better)
Translates to: WHQVLTTLLPIP*MCSWEAQGWFP
Trigger: AGGAAACCATCCCTGTGCCTCCCAAGAGCACATCAAAGGAATTGGAAGCAGTGTTGTCAAAACTTGGTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CCA 72 bp CTTGGGAGGCACAGGGATGGTTTCCTGCTGGAGAATTaGGCCTATATCAAATCTTTTGGGTCTAATTTGCAT +
Preference number: 6 (lower is better)
Translates to: LGRHRDGFLLEN*AYIKSFGSNLH
Trigger: ATGCAAATTAGACCCAAAAGATTTGATATAGGCCCAATTCTCCAGCAGGAAACCATCCCTGTGCCTCCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 90 bp GGAGTTACAGTTTGTCCTGTTAATTTCGGATCTGCAAGGATGGAATaGTTAACTTCTACGAGATCCAGAAGTTTAACGGTGTTCTCCATC +
Preference number: 6 (lower is better)
Translates to: GVTVCPVNFGSARME*LTSTRSRSLTVFSI
Trigger: GATGGAGAACACCGTTAAACTTCTGGATCTCGTAGAAGTTAACAATTCCATCCTTGCAGATCCGAAATTAACAGGACAAACTGTAACTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7
CDS CAA 72 bp GTTTGTCCTGTTAATTTCGGATCTGCAAGGATGGAATaGTTAACTTCTACGAGATCCAGAAGTTTAACGGTG +
Preference number: 6 (lower is better)
Translates to: VCPVNFGSARME*LTSTRSRSLTV
Trigger: CACCGTTAAACTTCTGGATCTCGTAGAAGTTAACAATTCCATCCTTGCAGATCCGAAATTAACAGGACAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074792.7