Pregenerated sensors for MTERF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049038

Ensembl transcript IDs: ENSMUST00000050813.4

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TGCTCTATTAACTGCACTAACTCTGCCTCGTTTTTGCAGACCATCTaGCAGAGTTTCCTTTTGGTGTTAACAGCAGCGGGACTGCAGATA	+
Preference number: 5 (lower is better) Translates to: CSINCTNSASFLQTI*QSFLLVLTAAGLQI Trigger: TATCTGCAGTCCCGCTGCTGTTAACACCAAAAGGAAACTCTGGCAGATGGTCTGCAAAAACGAGGCAGAGTTAGTGCAGTTAATAGAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS TCA 90 bp	ATTATCTGTGGCGTCAATTCCAGAACCATTGGTGACTCTCTTATTTaGGCTATGGAGATGCCTTCTTTCAGCAGTGCCTGGATTCTCTCT	+
Preference number: 5 (lower is better) Translates to: IICGVNSRTIGDSLI*AMEMPSFSSAWILS Trigger: AGAGAGAATCCAGGCACTGCTGAAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCCACAGATAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS GCA 90 bp	TCAATTCCAGAACCATTGGTGACTCTCTTATTTGAGCTATGGAGATaGCTTCTTTCAGCAGTGCCTGGATTCTCTCTTCTAGGACAGAAG	+
Preference number: 5 (lower is better) Translates to: SIPEPLVTLLFELWR*LLSAVPGFSLLGQK Trigger: CTTCTGTCCTAGAAGAGAGAATCCAGGCACTGCTGAAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS TCA 90 bp	TATCCTATATTGAATTATCTGTGGCGTCAATTCCAGAACCATTGGTaGCTCTCTTATTTGAGCTATGGAGATGCCTTCTTTCAGCAGTGC	+
Preference number: 5 (lower is better) Translates to: YPILNYLWRQFQNHW*LSYLSYGDAFFQQC Trigger: GCACTGCTGAAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCCACAGATAATTCAATATAGGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CCA 90 bp	CTCAAAAGTAGTCTTAGTGAAGGAAATACTGTTCTGGATACTTCCTaGCTGAAGTTGGAAAAGAAACCCTTTAAGTTTGGACAGAAGCTG	+
Preference number: 5 (lower is better) Translates to: LKSSLSEGNTVLDTS*LKLEKKPFKFGQKL Trigger: CAGCTTCTGTCCAAACTTAAAGGGTTTCTTTTCCAACTTCAGCCAGGAAGTATCCAGAACAGTATTTCCTTCACTAAGACTACTTTTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CCA 90 bp	GTTTCACCTACAGCTCTAGGAGAATGTAACACAATGAAGGGATTTTaGCTTAATAATTTTAGTAGCCACACTTTAGCATTGGCCTCAGAT	+
Preference number: 5 (lower is better) Translates to: VSPTALGECNTMKGF*LNNFSSHTLALASD Trigger: ATCTGAGGCCAATGCTAAAGTGTGGCTACTAAAATTATTAAGCCAAAATCCCTTCATTGTGTTACATTCTCCTAGAGCTGTAGGTGAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 90 bp	ACTAACTCTGCCTCGTTTTTGCAGACCATCTGCCAGAGTTTCCTTTaGGTGTTAACAGCAGCGGGACTGCAGATAATCGCTTCCGGACAG	+
Preference number: 6 (lower is better) Translates to: TNSASFLQTICQSFL*VLTAAGLQIIASGQ Trigger: CTGTCCGGAAGCGATTATCTGCAGTCCCGCTGCTGTTAACACCAAAAGGAAACTCTGGCAGATGGTCTGCAAAAACGAGGCAGAGTTAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	GCCTCGTTTTTGCAGACCATCTGCCAGAGTTTCCTTTaGGTGTTAACAGCAGCGGGACTGCAGATAATCGCT	+
Preference number: 6 (lower is better) Translates to: ASFLQTICQSFL*VLTAAGLQIIA Trigger: AGCGATTATCTGCAGTCCCGCTGCTGTTAACACCAAAAGGAAACTCTGGCAGATGGTCTGCAAAAACGAGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS TCA 72 bp	GGCGTCAATTCCAGAACCATTGGTGACTCTCTTATTTaGGCTATGGAGATGCCTTCTTTCAGCAGTGCCTGG	+
Preference number: 6 (lower is better) Translates to: GVNSRTIGDSLI*AMEMPSFSSAW Trigger: CCAGGCACTGCTGAAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	GGACAGAAGCTGAAGAACTTCAGAGTCTGTGAAGCCTaGCCCTTGAAGACATTTCAGCGTTTCACCTACAGC	+
Preference number: 6 (lower is better) Translates to: GQKLKNFRVCEA*PLKTFQRFTYS Trigger: GCTGTAGGTGAAACGCTGAAATGTCTTCAAGGGCAAGGCTTCACAGACTCTGAAGTTCTTCAGCTTCTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	AAGCTGAAGAACTTCAGAGTCTGTGAAGCCTTGCCCTaGAAGACATTTCAGCGTTTCACCTACAGCTCTAGG	+
Preference number: 6 (lower is better) Translates to: KLKNFRVCEALP*KTFQRFTYSSR Trigger: CCTAGAGCTGTAGGTGAAACGCTGAAATGTCTTCAAGGGCAAGGCTTCACAGACTCTGAAGTTCTTCAGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 90 bp	GATTCTGGAAACTGCTCTATTAACTGCACTAACTCTGCCTCGTTTTaGCAGACCATCTGCCAGAGTTTCCTTTTGGTGTTAACAGCAGCG	+
Preference number: 6 (lower is better) Translates to: DSGNCSINCTNSASF*QTICQSFLLVLTAA Trigger: CGCTGCTGTTAACACCAAAAGGAAACTCTGGCAGATGGTCTGCAAAAACGAGGCAGAGTTAGTGCAGTTAATAGAGCAGTTTCCAGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 90 bp	TTTAAGTTTGGACAGAAGCTGAAGAACTTCAGAGTCTGTGAAGCCTaGCCCTTGAAGACATTTCAGCGTTTCACCTACAGCTCTAGGAGA	+
Preference number: 6 (lower is better) Translates to: FKFGQKLKNFRVCEA*PLKTFQRFTYSSRR Trigger: TCTCCTAGAGCTGTAGGTGAAACGCTGAAATGTCTTCAAGGGCAAGGCTTCACAGACTCTGAAGTTCTTCAGCTTCTGTCCAAACTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	AACTGCTCTATTAACTGCACTAACTCTGCCTCGTTTTaGCAGACCATCTGCCAGAGTTTCCTTTTGGTGTTA	+
Preference number: 6 (lower is better) Translates to: NCSINCTNSASF*QTICQSFLLVL Trigger: TAACACCAAAAGGAAACTCTGGCAGATGGTCTGCAAAAACGAGGCAGAGTTAGTGCAGTTAATAGAGCAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS GCA 72 bp	ACAGTAAAGAAAGATTCTGGAAACTGCTCTATTAACTaGACTAACTCTGCCTCGTTTTTGCAGACCATCTGC	+
Preference number: 6 (lower is better) Translates to: TVKKDSGNCSIN*TNSASFLQTIC Trigger: GCAGATGGTCTGCAAAAACGAGGCAGAGTTAGTGCAGTTAATAGAGCAGTTTCCAGAATCTTTCTTTACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	GAAGGAAATACTGTTCTGGATACTTCCTGGCTGAAGTaGGAAAAGAAACCCTTTAAGTTTGGACAGAAGCTG	+
Preference number: 6 (lower is better) Translates to: EGNTVLDTSWLK*EKKPFKFGQKL Trigger: CAGCTTCTGTCCAAACTTAAAGGGTTTCTTTTCCAACTTCAGCCAGGAAGTATCCAGAACAGTATTTCCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 90 bp	AGTCTTAGTGAAGGAAATACTGTTCTGGATACTTCCTGGCTGAAGTaGGAAAAGAAACCCTTTAAGTTTGGACAGAAGCTGAAGAACTTC	+
Preference number: 6 (lower is better) Translates to: SLSEGNTVLDTSWLK*EKKPFKFGQKLKNF Trigger: GAAGTTCTTCAGCTTCTGTCCAAACTTAAAGGGTTTCTTTTCCAACTTCAGCCAGGAAGTATCCAGAACAGTATTTCCTTCACTAAGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS TCA 72 bp	TTGAATTATCTGTGGCGTCAATTCCAGAACCATTGGTaGCTCTCTTATTTGAGCTATGGAGATGCCTTCTTT	+
Preference number: 6 (lower is better) Translates to: LNYLWRQFQNHW*LSYLSYGDAFF Trigger: AAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCCACAGATAATTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 90 bp	TTCTTATCCTATATTGAATTATCTGTGGCGTCAATTCCAGAACCATaGGTGACTCTCTTATTTGAGCTATGGAGATGCCTTCTTTCAGCA	+
Preference number: 6 (lower is better) Translates to: FLSYIELSVASIPEP*VTLLFELWRCLLSA Trigger: TGCTGAAAGAAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCCACAGATAATTCAATATAGGATAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CCA 72 bp	AGTCTTAGTGAAGGAAATACTGTTCTGGATACTTCCTaGCTGAAGTTGGAAAAGAAACCCTTTAAGTTTGGA	+
Preference number: 6 (lower is better) Translates to: SLSEGNTVLDTS*LKLEKKPFKFG Trigger: TCCAAACTTAAAGGGTTTCTTTTCCAACTTCAGCCAGGAAGTATCCAGAACAGTATTTCCTTCACTAAGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050813.4
CDS CAA 72 bp	TATATTGAATTATCTGTGGCGTCAATTCCAGAACCATaGGTGACTCTCTTATTTGAGCTATGGAGATGCCTT	+
Preference number: 6 (lower is better) Translates to: YIELSVASIPEP*VTLLFELWRCL Trigger: AAGGCATCTCCATAGCTCAAATAAGAGAGTCACCAATGGTTCTGGAATTGACGCCACAGATAATTCAATATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050813.4

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