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Pregenerated sensors for MTERF1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053178

Ensembl transcript IDs: ENSMUST00000177258.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAATTGCCGCTTCATATCTTCTCTaGCTCCAGGACAGCAGAGCA +
Preference number: 4 (lower is better)
Translates to: LSCLKSPYWNQCHTCPIAASYLL*LQDSRA
Trigger: TGCTCTGCTGTCCTGGAGTCAGAGAAGATATGAAGC...GGCAATTGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR GCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAGTACCTCCTCCTCACTaGACCCAAGAGAAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPVPPPH*TQEKAA
Trigger: GGCTGCTTTCTCTTGGGTGCAGTGAGGAGGAGGTAC...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCACAGATCCCACCGTTTTaGAAGACTTTCAGGAGTGCG +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPQIPPF*KTFRSA
Trigger: CGCACTCCTGAAAGTCTTTCAAAACGGTGGGATCTG...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp CTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAATTGCCAGCTCGTGGATATCTTaGTATGATGCTACCAATCAC +
Preference number: 4 (lower is better)
Translates to: LSCLKSPYWNQCHTCPIASSWIS*YDATNH
Trigger: GTGATTGGTAGCATCATATCAAGATATCCACGAGCT...GGCAATTGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR GCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAAGGACAGCAGAGCAATaGTGGATGTGCTCAAGTCAT +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPRTAEQ*WMCSSH
Trigger: ATGACTTGAGCACATCCAGCATTGCTCTGCTGTCCT...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp CTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAATTGCCACTAAACGTCCTGAATaGAATCGACTTGAGGAAAAC +
Preference number: 4 (lower is better)
Translates to: LSCLKSPYWNQCHTCPIATKRPE*NRLEEN
Trigger: GTTTTCCTCAAGTCGATTTCATTCAGGACGTTTAGT...GGCAATTGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCACTGCAGAGGCATTTATaGGTCAATCCAACAGAGCAA +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPLQRHL*VNPTEQ
Trigger: TTGCTCTGTTGGATTGACTCATAAATGCCTCTGCAG...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAACACGCTTGGTGCTCTaGATTAAGATGGAAGGGTTT +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPTRLVL*IKMEGF
Trigger: AAACCCTTCCATCTTAATTCAGAGCACCAAGCGTGT...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR GCA 90 bp CTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAATTGCCGACATACCAGTCTCCTaGAAAAATTCAACCATTTGC +
Preference number: 4 (lower is better)
Translates to: LSCLKSPYWNQCHTCPIADIPVS*KNSTIC
Trigger: GCAAATGGTTGAATTTTTGCAGGAGACTGGTATGTC...GGCAATTGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR TCA 90 bp ACAAAACTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAACTTCTGCTGAATACTaGAGCATCCAGCCTCTTAAA +
Preference number: 4 (lower is better)
Translates to: TKLSCLKSPYWNQCHTCPTSAEY*SIQPLK
Trigger: TTTAAGAGGCTGGATGCTTCAGTATTCAGCAGAAGT...TGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAGTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS-3UTR CAA 90 bp CTCTCCTGTTTGAAAAGTCCATACTGGAACCAGTGCCACACCTGTCCAATTGCCAGCAGCAGGTCCTGTTaGTTCAAGTTGAAAGTTGAT +
Preference number: 5 (lower is better)
Translates to: LSCLKSPYWNQCHTCPIASSRSC*FKLKVD
Trigger: ATCAACTTTCAACTTGAACAAACAGGACCTGCTGCT...GGCAATTGGACAGGTGTGGCACTGGTTCCAGTATGGACTTTTCAAACAGGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS GCA 90 bp CCATATTCAGATAGCTTAGGACAAACCTCTGTACCTCCTCCTCACTaGACCCAAGAGAAAGCAGCCTCTCTCTTATGTTTGTGTAATTTT +
Preference number: 5 (lower is better)
Translates to: PYSDSLGQTSVPPPH*TQEKAASLLCLCNF
Trigger: AAAATTACACAAACATAAGAGAGAGGCTGCTTTCTCTTGGGTGCAGTGAGGAGGAGGTACAGAGGTTTGTCCTAAGCTATCTGAATATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS TCA 90 bp AACGTCCTGAATGAAATCGACTTGAGGAAAACTTCTGCTGAATACTaGAGCATCCAGCCTCTTAAATCAAAGAGAAAGTTTCTTCTCACA +
Preference number: 5 (lower is better)
Translates to: NVLNEIDLRKTSAEY*SIQPLKSKRKFLLT
Trigger: TGTGAGAAGAAACTTTCTCTTTGATTTAAGAGGCTGGATGCTTCAGTATTCAGCAGAAGTTTTCCTCAAGTCGATTTCATTCAGGACGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS TCA 72 bp GTCGCCTCCTTGCCATGTCGATATCAACGCCCATGGTaGCTAAGTTGCTCAGCAGGTCCTCCCTCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: VASLPCRYQRPW*LSCSAGPPSPP
Trigger: AGGAGGAGAGGGAGGACCTGCTGAGCAACTTAGTCACCATGGGCGTTGATATCGACATGGCAAGGAGGCGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS GCA 72 bp CTTCATATCTTCTCTGACTCCAGGACAGCAGAGCAATaGTGGATGTGCTCAAGTCATACCCAGCATGGGACA +
Preference number: 6 (lower is better)
Translates to: LHIFSDSRTAEQ*WMCSSHTQHGT
Trigger: TGTCCCATGCTGGGTATGACTTGAGCACATCCAGCATTGCTCTGCTGTCCTGGAGTCAGAGAAGATATGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2
CDS TCA 72 bp CCACATAATCTCTTCAGTTTAGCTTCATATCTTCTCTaGCTCCAGGACAGCAGAGCAATGCTGGATGTGCTC +
Preference number: 6 (lower is better)
Translates to: PHNLFSLASYLL*LQDSRAMLDVL
Trigger: GAGCACATCCAGCATTGCTCTGCTGTCCTGGAGTCAGAGAAGATATGAAGCTAAACTGAAGAGATTATGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177258.2