Pregenerated sensors for MTCP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031200Ensembl transcript IDs: ENSMUST00000033542.11, ENSMUST00000114081.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATCGGCACCAAGTCCTTGGTGATGAGGGCATCTGTTCTGTAGCATaGTCTGATTTTTGTGGGATTCACCAGATCCTAGGTTCAGCCGAT | + |
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Preference number: 1 (lower is better) Translates to: NRHQVLGDEGICSVA*SDFCGIHQILGSAD Trigger: ATCGGCTGAACCTAGGATCTGGTGAATCCCACAAAAATCAGAGCATGCTACAGAACAGATGCCCTCATCACCAAGGACTTGGTGCCGATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR TCA 90 bp | TCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTCACGGCAGTGGTGAATaGAGTGATTGCCATGTAATG | + |
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Preference number: 2 (lower is better) Translates to: SVVSLAMFFMALPKYLCSHGSGE*SDCHVM Trigger: CATTACATGGCAATCACTTCATTCACCACTGCCGTG...AGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTCTCCCACGGCAGTGGTGAATaGAGTGATTGCCATGTAATG | + |
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Preference number: 2 (lower is better) Translates to: KAKEPLQLISSVQITFFSHGSGE*SDCHVM Trigger: CATTACATGGCAATCACTTCATTCACCACTGCCGTG...GGAGAAAAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR CCA 90 bp | AAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTCTCCACTAAATGCTTTTGTTaGCTTGATTTCTGCCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: KAKEPLQLISSVQITFFSTKCFC*LDFCPV Trigger: CACAGGGCAGAAATCAAGCCAACAAAAGCATTTAGT...GGAGAAAAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR CCA 90 bp | AGAAGAAAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTAGGTCAGTACTGGGATaGGAAACACTAGAACAAAAT | + |
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Preference number: 2 (lower is better) Translates to: RRKAKEPLQLISSVQITFRSVLG*ETLEQN Trigger: ATTTTGTTCTAGTGTTTCCCATCCCAGTACTGACCT...AAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTTTCTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR TCA 90 bp | ATTAGGTCAGTACTGGGATGGGAAACACTAGAACAAAATCTCATATATTTACAGATAAGAAAAAGCAGGTaGATTTGCTGCAGGGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: IRSVLGWETLEQNLIYLQIRKSR*ICCRGN Trigger: ATTTCCCCTGCAGCAAATTCACCTGCTTTTTCTTAT...CTGTAAATATATGAGATTTTGTTCTAGTGTTTCCCATCCCAGTACTGACCTAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR GCA 72 bp | CAAGTCCTTGGTGATGAGGGCATCTGTTCTGTAGCATaGTCTGATTTTTGTGGGATTCACCAGATCCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: QVLGDEGICSVA*SDFCGIHQILG Trigger: ACCTAGGATCTGGTGAATCCCACAAAAATCAGAGCATGCTACAGAACAGATGCCCTCATCACCAAGGACTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTCTCCATCGGCACCAAGTCCTaGGTGATGAGGGCATCTGTT | + |
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Preference number: 3 (lower is better) Translates to: KAKEPLQLISSVQITFFSIGTKS*VMRASV Trigger: AACAGATGCCCTCATCACCAAGGACTTGGTGCCGAT...GGAGAAAAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| 3UTR-3UTR CAA 90 bp | TCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTTTGCCATGTAATGAATaGAACAGAGGAGCGTATCTT | + |
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Preference number: 3 (lower is better) Translates to: SVVSLAMFFMALPKYLCSLPCNE*NRGAYL Trigger: AAGATACGCTCCTCTGTTCAATTCATTACATGGCAA...AGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| 3UTR-3UTR CAA 90 bp | AGAAGAAAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTGCCATGTAATGAATaGAACAGAGGAGCGTATCTT | + |
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Preference number: 3 (lower is better) Translates to: RRKAKEPLQLISSVQITFLPCNE*NRGAYL Trigger: AAGATACGCTCCTCTGTTCAATTCATTACATGGCAA...AAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTTTCTTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| CDS-3UTR CCA 90 bp | TGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTTGAGCAGCCAGAGATGATCGGGTaGAGCCCCCACATCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CHWQCSSWPFLNISVLEQPEMIG*SPHILS Trigger: AGAGAGGATGTGGGGGCTCCACCCGATCATCTCTGG...CTGCTCAAGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR GCA 90 bp | TGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTTGAGCAGCCACAGCTACCCATGTaGGCTGATATTCGTCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: CHWQCSSWPFLNISVLEQPQLPM*ADIRRG Trigger: ACCGCGACGAATATCAGCGCACATGGGTAGCTGTGG...CTGCTCAAGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR CCA 90 bp | TTCTCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTCATGTAGCGCTCCTCTaGGTAGAGTTGCCACATGAG | + |
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Preference number: 4 (lower is better) Translates to: FSVVSLAMFFMALPKYLCHVALL*VELPHE Trigger: CTCATGTGGCAACTCTACCCAGAGGAGCGCTACATG...ACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR TCA 90 bp | TTCTCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTGGGAGGTAAGAAGGTaGCTTGGCTTAGTTGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: FSVVSLAMFFMALPKYLCWEVRR*LGLVAS Trigger: TGACGCAACTAAGCCAAGTCACCTTCTTACCTCCCA...ACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR GCA 90 bp | GTCAGTACTGGGATGGGAAACACTAGAACAAAATCTCATATATTTACAGGATGGCCACAGCTACCCATGTaGGCTGATATTCGTCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: VSTGMGNTRTKSHIFTGWPQLPM*ADIRRG Trigger: ACCGCGACGAATATCAGCGCACATGGGTAGCTGTGG...CCATCCTGTAAATATATGAGATTTTGTTCTAGTGTTTCCCATCCCAGTACTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| CDS-3UTR CCA 90 bp | CCCAAAGGAGTCAATTTAAAGTTACATATCCTGACTAAATGCTTTTGTTGGCTTCCAGAGATGATCGGGTaGAGCCCCCACATCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: PKGVNLKLHILTKCFCWLPEMIG*SPHILS Trigger: AGAGAGGATGTGGGGGCTCCACCCGATCATCTCTGG...AAGCCAACAAAAGCATTTAGTCAGGATATGTAACTTTAAATTGACTCCTTTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR CCA 90 bp | CCCAAAGGAGTCAATTTAAAGTTACATATCCTGACTAAATGCTTTTGTTGGCTTCATGTAGCGCTCCTCTaGGTAGAGTTGCCACATGAG | + |
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Preference number: 4 (lower is better) Translates to: PKGVNLKLHILTKCFCWLHVALL*VELPHE Trigger: CTCATGTGGCAACTCTACCCAGAGGAGCGCTACATG...AAGCCAACAAAAGCATTTAGTCAGGATATGTAACTTTAAATTGACTCCTTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR TCA 90 bp | ATTAGGTCAGTACTGGGATGGGAAACACTAGAACAAAATCTCATATATTTACAGTGGGAGGTAAGAAGGTaGCTTGGCTTAGTTGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: IRSVLGWETLEQNLIYLQWEVRR*LGLVAS Trigger: TGACGCAACTAAGCCAAGTCACCTTCTTACCTCCCA...CTGTAAATATATGAGATTTTGTTCTAGTGTTTCCCATCCCAGTACTGACCTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| CDS GCA 90 bp | GAGCCTTTAGGAAACTTGTCTCCTCTTCCACCACAGCTACCCATGTaGGCTGATATTCGTCGCGGTAGACTCCTTCTTGGTGAACCCAGA | + |
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Preference number: 5 (lower is better) Translates to: EPLGNLSPLPPQLPM*ADIRRGRLLLGEPR Trigger: TCTGGGTTCACCAAGAAGGAGTCTACCGCGACGAATATCAGCGCACATGGGTAGCTGTGGTGGAAGAGGAGACAAGTTTCCTAAAGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR CAA 90 bp | TCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTGCGGTAGACTCCTTCTaGGTGAACCCAGAGATGATC | + |
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Preference number: 5 (lower is better) Translates to: SVVSLAMFFMALPKYLCSAVDSF*VNPEMI Trigger: GATCATCTCTGGGTTCACCAAGAAGGAGTCTACCGC...AGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR CAA 90 bp | TCTGTAGTGTCACTGGCAATGTTCTTCATGGCCCTTCCTAAATATCTCTGTTCTGAGCCTTTAGGAAACTaGTCTCCTCTTCCACCACAG | + |
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Preference number: 5 (lower is better) Translates to: SVVSLAMFFMALPKYLCSEPLGN*SPLPPQ Trigger: CTGTGGTGGAAGAGGAGACAAGTTTCCTAAAGGCTC...AGAACAGAGATATTTAGGAAGGGCCATGAAGAACATTGCCAGTGACACTACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS-3UTR CAA 90 bp | AAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTCTCCGAGCCTTTAGGAAACTaGTCTCCTCTTCCACCACAG | + |
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Preference number: 5 (lower is better) Translates to: KAKEPLQLISSVQITFFSEPLGN*SPLPPQ Trigger: CTGTGGTGGAAGAGGAGACAAGTTTCCTAAAGGCTC...GGAGAAAAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| CDS-3UTR CAA 90 bp | AAGAAAGGCAAAGGAGCCTTTGCAGCTAATTTCATCAGTACAAATAACCTTTTTGCGGTAGACTCCTTCTaGGTGAACCCAGAGATGATC | + |
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Preference number: 5 (lower is better) Translates to: KKGKGAFAANFISTNNLFAVDSF*VNPEMI Trigger: GATCATCTCTGGGTTCACCAAGAAGGAGTCTACCGC...AAAAAGGTTATTTGTACTGATGAAATTAGCTGCAAAGGCTCCTTTGCCTTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033542.11 |
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| CDS CAA 72 bp | CCATGTGCGCTGATATTCGTCGCGGTAGACTCCTTCTaGGTGAACCCAGAGATGATCGGGTGGAGCCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: PCALIFVAVDSF*VNPEMIGWSPH Trigger: GTGGGGGCTCCACCCGATCATCTCTGGGTTCACCAAGAAGGAGTCTACCGCGACGAATATCAGCGCACATGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS CAA 90 bp | CACAGCTACCCATGTGCGCTGATATTCGTCGCGGTAGACTCCTTCTaGGTGAACCCAGAGATGATCGGGTGGAGCCCCCACATCCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: HSYPCALIFVAVDSF*VNPEMIGWSPHILS Trigger: AGAGAGGATGTGGGGGCTCCACCCGATCATCTCTGGGTTCACCAAGAAGGAGTCTACCGCGACGAATATCAGCGCACATGGGTAGCTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS GCA 72 bp | GGAAACTTGTCTCCTCTTCCACCACAGCTACCCATGTaGGCTGATATTCGTCGCGGTAGACTCCTTCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: GNLSPLPPQLPM*ADIRRGRLLLG Trigger: ACCAAGAAGGAGTCTACCGCGACGAATATCAGCGCACATGGGTAGCTGTGGTGGAAGAGGAGACAAGTTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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| CDS CAA 90 bp | CACCTAAAGGAACCTGAACTTGCTGGACTCGAGCCTTTAGGAAACTaGTCTCCTCTTCCACCACAGCTACCCATGTGCGCTGATATTCGT | + |
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Preference number: 6 (lower is better) Translates to: HLKEPELAGLEPLGN*SPLPPQLPMCADIR Trigger: ACGAATATCAGCGCACATGGGTAGCTGTGGTGGAAGAGGAGACAAGTTTCCTAAAGGCTCGAGTCCAGCAAGTTCAGGTTCCTTTAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033542.11 ENSMUST00000114081.2 |
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