RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MTARC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073481

Ensembl transcript IDs: ENSMUST00000068725.10, ENSMUST00000161821.4

Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCAGGGCTCAACAGCCAGGCCAAGACCGGCCAACAGGCTTTCGTaGGCATGCGAGCACATCAGATATGTGCACATTCCCTGCACATTC +
Preference number: 1 (lower is better)
Translates to: QQGSTARPRPANRLS*ACEHIRYVHIPCTF
Trigger: GAATGTGCAGGGAATGTGCACATATCTGATGTGCTCGCATGCTCACGAAAGCCTGTTGGCCGGTCTTGGCCTGGCTGTTGAGCCCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR-3UTR GCA 90 bp GAGCCTTTAAGACTGAGTTCATGGTTTCTCCTTGTTCCTTCTTCCGAAGGAAGATATGTGCACATTCCCTaGACATTCAGGGCAAGAGGG +
Preference number: 2 (lower is better)
Translates to: EPLRLSSWFLLVPSSEGRYVHIP*TFRARG
Trigger: CCCTCTTGCCCTGAATGTGCAGGGAATGTGCACATA...TCTTCCTTCGGAAGAAGGAACAAGGAGAAACCATGAACTCAGTCTTAAAGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR-3UTR TCA 90 bp TCGCACTTATTAATGACAATGGAACCACACAGCTGTAAGAGAGCTAACTCGGCTAACAAAATAACCCCATaGCCTCTGAAGTCATTTCTG +
Preference number: 2 (lower is better)
Translates to: SHLLMTMEPHSCKRANSANKITP*PLKSFL
Trigger: CAGAAATGACTTCAGAGGTCATGGGGTTATTTTGTT...AGCCGAGTTAGCTCTCTTACAGCTGTGTGGTTCCATTGTCATTAATAAGTGCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR TCA 72 bp TCAACAGCCAGGCCAAGACCGGCCAACAGGCTTTCGTaGGCATGCGAGCACATCAGATATGTGCACATTCCC +
Preference number: 3 (lower is better)
Translates to: STARPRPANRLS*ACEHIRYVHIP
Trigger: GGGAATGTGCACATATCTGATGTGCTCGCATGCTCACGAAAGCCTGTTGGCCGGTCTTGGCCTGGCTGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR GCA 72 bp ACAGGCTTTCGTGAGCATGCGAGCACATCAGATATGTaGACATTCCCTGCACATTCAGGGCAAGAGGGCTCC +
Preference number: 3 (lower is better)
Translates to: TGFREHASTSDM*TFPAHSGQEGS
Trigger: GGAGCCCTCTTGCCCTGAATGTGCAGGGAATGTGCACATATCTGATGTGCTCGCATGCTCACGAAAGCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR TCA 72 bp AAGAAAAATAGAGATCCGGTTCCAGGAAGATGGCCATaGGGACTCGCAGATATGTCTCCTCGGACCTGGAAG +
Preference number: 3 (lower is better)
Translates to: KKNRDPVPGRWP*GLADMSPRTWK
Trigger: CTTCCAGGTCCGAGGAGACATATCTGCGAGTCCTCATGGCCATCTTCCTGGAACCGGATCTCTATTTTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR TCA 72 bp TGTTACTGCAAGCTAGTGCATCATCCTGTGCTACCGTaGGCCTTTAAGACTGAGTTCATGGTTTCTCCTTGT +
Preference number: 3 (lower is better)
Translates to: CYCKLVHHPVLP*AFKTEFMVSPC
Trigger: ACAAGGAGAAACCATGAACTCAGTCTTAAAGGCTCACGGTAGCACAGGATGATGCACTAGCTTGCAGTAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR CCA 72 bp ATCCTGTGCTACCGTGAGCCTTTAAGACTGAGTTCATaGTTTCTCCTTGTTCCTTCTTCCGAAGGAAGATTC +
Preference number: 3 (lower is better)
Translates to: ILCYREPLRLSS*FLLVPSSEGRF
Trigger: GAATCTTCCTTCGGAAGAAGGAACAAGGAGAAACCATGAACTCAGTCTTAAAGGCTCACGGTAGCACAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
3UTR TCA 72 bp AGCCTCACATTCCTAAACCACCTCTGGCACTTTTCTTaGATTAAGTCAAGGCGTACACAGCTCCGAAAGAAA +
Preference number: 3 (lower is better)
Translates to: SLTFLNHLWHFS*IKSRRTQLRKK
Trigger: TTTCTTTCGGAGCTGTGTACGCCTTGACTTAATTCAAGAAAAGTGCCAGAGGTGGTTTAGGAATGTGAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CCA 90 bp GGTTCCAGGAAGATGGCCATGAGGACTCGCAGATATGTCTCCTCGGACCTGGAAACAAGGCGAGGCTCCTaGCGGGCAGTGACCATGTGT +
Preference number: 4 (lower is better)
Translates to: GSRKMAMRTRRYVSSDLETRRGS*RAVTMC
Trigger: ACACATGGTCACTGCCCGCCAGGAGCCTCGCCTTGT...TTCCAGGTCCGAGGAGACATATCTGCGAGTCCTCATGGCCATCTTCCTGGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR TCA 90 bp GGTTCCAGGAAGATGGCCATGAGGACTCGCAGATATGTCTCCTCGGACCTGGAAGAAAGCCTCACAGCCTaGCACCACGATGTTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GSRKMAMRTRRYVSSDLEESLTA*HHDVWP
Trigger: AGGCCAAACATCGTGGTGTCAGGCTGTGAGGCTTTC...TTCCAGGTCCGAGGAGACATATCTGCGAGTCCTCATGGCCATCTTCCTGGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR GCA 90 bp AGCTTTCGAGCTGTGTCTTTAAACTTCAGCAATCGTAGAGGCAGGAATGAGAAAGACACCGTGCCCACCTaGTGCAGCTGCCGGCGCCGC +
Preference number: 4 (lower is better)
Translates to: SFRAVSLNFSNRRGRNEKDTVPT*CSCRRR
Trigger: GCGGCGCCGGCAGCTGCAGCAGGTGGGCACGGTGTC...TTTCTCATTCCTGCCTCTACGATTGCTGAAGTTTAAAGACACAGCTCGAAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR TCA 90 bp TTATTAATGACAATGGAACCACACAGCTGTAAGAGAGCTAACTCGGCTCCATGTGCTCCTGGCGGGCAGTaGCCATGTGTCCGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LLMTMEPHSCKRANSAPCAPGGQ*PCVRPP
Trigger: AGGAGGACGGACACATGGTCACTGCCCGCCAGGAGC...ACATGGAGCCGAGTTAGCTCTCTTACAGCTGTGTGGTTCCATTGTCATTAATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR GCA 90 bp GAGCCTTTAAGACTGAGTTCATGGTTTCTCCTTGTTCCTTCTTCCGAAGGAAGATCAGGTGGACAGGGCTaGAGTCCGGGTAGGCTACCT +
Preference number: 4 (lower is better)
Translates to: EPLRLSSWFLLVPSSEGRSGGQG*SPGRLP
Trigger: AGGTAGCCTACCCGGACTGCAGCCCTGTCCACCTGA...TCTTCCTTCGGAAGAAGGAACAAGGAGAAACCATGAACTCAGTCTTAAAGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR TCA 90 bp GCACATTCCCTGCACATTCAGGGCAAGAGGGCTCCTTTTCTTACCTTTCTCAAGCACAATCTCTGCCTTTaGTGTCGAGACCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: AHSLHIQGKRAPFLTFLKHNLCL*CRDQTA
Trigger: GGCTGTTTGGTCTCGACATCAAAGGCAGAGATTGTG...CTTGAGAAAGGTAAGAAAAGGAGCCCTCTTGCCCTGAATGTGCAGGGAATGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CCA 90 bp GCTTTCGTGAGCATGCGAGCACATCAGATATGTGCACATTCCCTGCACATTCAGCTTCAGGGTCTCCAGTaGCTCCTTCCTGTCTATGAT +
Preference number: 4 (lower is better)
Translates to: AFVSMRAHQICAHSLHIQLQGLQ*LLPVYD
Trigger: ATCATAGACAGGAAGGAGCCACTGGAGACCCTGAAG...CTGAATGTGCAGGGAATGTGCACATATCTGATGTGCTCGCATGCTCACGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR TCA 90 bp AAAAGTGGCAGCTTTCGAGCTGTGTCTTTAAACTTCAGCAATCGTAGAGGCAGGAATTGTTCTCCAGGGTaGTGGAGACCAGCACAAGGC +
Preference number: 4 (lower is better)
Translates to: KSGSFRAVSLNFSNRRGRNCSPG*WRPAQG
Trigger: GCCTTGTGCTGGTCTCCATCACCCTGGAGAACAATT...CCTGCCTCTACGATTGCTGAAGTTTAAAGACACAGCTCGAAAGCTGCCACTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR GCA 90 bp ATGTGCACATTCCCTGCACATTCAGGGCAAGAGGGCTCCTTTTCTTACCTTTCTATTGGCAGAACTATCTaGTCCATGCCTGGAGCTTCC +
Preference number: 4 (lower is better)
Translates to: MCTFPAHSGQEGSFSYLSIGRTI*SMPGAS
Trigger: GGAAGCTCCAGGCATGGAGCAGATAGTTCTGCCAAT...AGAAAGGTAAGAAAAGGAGCCCTCTTGCCCTGAATGTGCAGGGAATGTGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CCA 90 bp TTATTAATGACAATGGAACCACACAGCTGTAAGAGAGCTAACTCGGCTCCATGTTATCTGCTCCATGCCTaGAGCTTCCAGCGTCAGGTA +
Preference number: 4 (lower is better)
Translates to: LLMTMEPHSCKRANSAPCYLLHA*SFQRQV
Trigger: TACCTGACGCTGGAAGCTCCAGGCATGGAGCAGATA...ACATGGAGCCGAGTTAGCTCTCTTACAGCTGTGTGGTTCCATTGTCATTAATAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CCA 90 bp ATGTGCACATTCCCTGCACATTCAGGGCAAGAGGGCTCCTTTTCTTACCTTTCTAGAAGGGAGCTTGATTaGCAGAACTATCTGCTCCAT +
Preference number: 4 (lower is better)
Translates to: MCTFPAHSGQEGSFSYLSRRELD*QNYLLH
Trigger: ATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCT...AGAAAGGTAAGAAAAGGAGCCCTCTTGCCCTGAATGTGCAGGGAATGTGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CCA 90 bp GAGCCTTTAAGACTGAGTTCATGGTTTCTCCTTGTTCCTTCTTCCGAAGGAAGATATGATGCCGGTGTCTaGGTCCACTGTAGTCAGAAC +
Preference number: 4 (lower is better)
Translates to: EPLRLSSWFLLVPSSEGRYDAGV*VHCSQN
Trigger: GTTCTGACTACAGTGGACCCAGACACCGGCATCATA...TCTTCCTTCGGAAGAAGGAACAAGGAGAAACCATGAACTCAGTCTTAAAGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR GCA 90 bp GCTTTCGTGAGCATGCGAGCACATCAGATATGTGCACATTCCCTGCACATTCAGTTGTTCTTCCTTTCATaGTGGTATCAAACTGAACCA +
Preference number: 4 (lower is better)
Translates to: AFVSMRAHQICAHSLHIQLFFLS*WYQTEP
Trigger: TGGTTCAGTTTGATACCAGCATGAAAGGAAGAACAA...CTGAATGTGCAGGGAATGTGCACATATCTGATGTGCTCGCATGCTCACGAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS CCA 90 bp CTTCAGGGTCTCCAGTGGCTCCTTCCTGTCTATGATGCCGGTGTCTaGGTCCACTGTAGTCAGAACGCACCTGGGACAGCTCAACACCCT +
Preference number: 5 (lower is better)
Translates to: LQGLQWLLPVYDAGV*VHCSQNAPGTAQHP
Trigger: AGGGTGTTGAGCTGTCCCAGGTGCGTTCTGACTACAGTGGACCCAGACACCGGCATCATAGACAGGAAGGAGCCACTGGAGACCCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS TCA 90 bp GACCAAACAGCCTGCAGTTGTGGATCTTATTCGAAGAAGGGAGCTTaGTTGGCAGAACTATCTGCTCCATGCCTGGAGCTTCCAGCGTCA +
Preference number: 5 (lower is better)
Translates to: DQTACSCGSYSKKGA*LAELSAPCLELPAS
Trigger: TGACGCTGGAAGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CCA 90 bp AAACAGCCTGCAGTTGTGGATCTTATTCGAAGAAGGGAGCTTGATTaGCAGAACTATCTGCTCCATGCCTGGAGCTTCCAGCGTCAGGTA +
Preference number: 5 (lower is better)
Translates to: KQPAVVDLIRRRELD*QNYLLHAWSFQRQV
Trigger: TACCTGACGCTGGAAGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS-3UTR CAA 90 bp CTGCACATTCAGGGCAAGAGGGCTCCTTTTCTTACCTTTCTCAAGCGACAGACCGGTAAAGTTTCTTCGTaGTTCTTCCTTTCATGCTGG +
Preference number: 5 (lower is better)
Translates to: LHIQGKRAPFLTFLKRQTGKVSS*FFLSCW
Trigger: CCAGCATGAAAGGAAGAACAACGAAGAAACTTTACC...GGTCTGTCGCTTGAGAAAGGTAAGAAAAGGAGCCCTCTTGCCCTGAATGTGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS TCA 90 bp GCTCCCAAGCTTCTCCACCGAGAAATACATCCCAAAAAGTGGAGATaGCTGGTATATACTCTTCACAGAAGGATCACACAGGCGATAGCT +
Preference number: 5 (lower is better)
Translates to: APKLLHREIHPKKWR*LVYTLHRRITQAIA
Trigger: AGCTATCGCCTGTGTGATCCTTCTGTGAAGAGTATATACCAGTCATCTCCACTTTTTGGGATGTATTTCTCGGTGGAGAAGCTTGGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS-3UTR CAA 90 bp ATGTGCACATTCCCTGCACATTCAGGGCAAGAGGGCTCCTTTTCTTACCTTTCTCCAAACAGCCTGCAGTaGTGGATCTTATTCGAAGAA +
Preference number: 5 (lower is better)
Translates to: MCTFPAHSGQEGSFSYLSPNSLQ*WILFEE
Trigger: TTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGG...AGAAAGGTAAGAAAAGGAGCCCTCTTGCCCTGAATGTGCAGGGAATGTGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS CCA 90 bp AACTTTCAGAAGGGTAAAGTTTCTTCGTTGTTCTTCCTTTCATGCTaGTATCAAACTGAACCAACCTGTAGGCTTGCGTCTTCAGGTAGT +
Preference number: 5 (lower is better)
Translates to: NFQKGKVSSLFFLSC*YQTEPTCRLASSGS
Trigger: ACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAAAGGAAGAACAACGAAGAAACTTTACCCTTCTGAAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS GCA 72 bp CCCAGCGCGGCGACGCCGAGCCAGGTGGACCGCGGCTaGCCAGGGAGGCCGAGGCGAGCCAGAGCCGTAGAG +
Preference number: 6 (lower is better)
Translates to: PSAATPSQVDRG*PGRPRRARAVE
Trigger: CTCTACGGCTCTGGCTCGCCTCGGCCTCCCTGGGCAGCCGCGGTCCACCTGGCTCGGCGTCGCCGCGCTGGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS CCA 72 bp TCCAGGGTGATGGAGACCAGCACAAGGCGAGGCTCCTaGCGGGCAGTGACCATGTGTCCGTCCTCCTTCACC +
Preference number: 6 (lower is better)
Translates to: SRVMETSTRRGS*RAVTMCPSSFT
Trigger: GGTGAAGGAGGACGGACACATGGTCACTGCCCGCCAGGAGCCTCGCCTTGTGCTGGTCTCCATCACCCTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS TCA 72 bp TGGAGACCAGCACAAGGCGAGGCTCCTGGCGGGCAGTaGCCATGTGTCCGTCCTCCTTCACCACCATCCAGA +
Preference number: 6 (lower is better)
Translates to: WRPAQGEAPGGQ*PCVRPPSPPSR
Trigger: TCTGGATGGTGGTGAAGGAGGACGGACACATGGTCACTGCCCGCCAGGAGCCTCGCCTTGTGCTGGTCTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS TCA 72 bp CTGGAGCTTCCAGCGTCAGGTAATTGTTCTCCAGGGTaGTGGAGACCAGCACAAGGCGAGGCTCCTGGCGGG +
Preference number: 6 (lower is better)
Translates to: LELPASGNCSPG*WRPAQGEAPGG
Trigger: CCCGCCAGGAGCCTCGCCTTGTGCTGGTCTCCATCACCCTGGAGAACAATTACCTGACGCTGGAAGCTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CCA 72 bp CTCCAGTGGCTCCTTCCTGTCTATGATGCCGGTGTCTaGGTCCACTGTAGTCAGAACGCACCTGGGACAGCT +
Preference number: 6 (lower is better)
Translates to: LQWLLPVYDAGV*VHCSQNAPGTA
Trigger: AGCTGTCCCAGGTGCGTTCTGACTACAGTGGACCCAGACACCGGCATCATAGACAGGAAGGAGCCACTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS GCA 72 bp CGACTAAGGAGGCTTCAGAAATCAGGTGGACAGGGCTaGAGTCCGGGTAGGCTACCTCATAGTTCTGAAGGT +
Preference number: 6 (lower is better)
Translates to: RLRRLQKSGGQG*SPGRLPHSSEG
Trigger: ACCTTCAGAACTATGAGGTAGCCTACCCGGACTGCAGCCCTGTCCACCTGATTTCTGAAGCCTCCTTAGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 90 bp AGACCAAACAGCCTGCAGTTGTGGATCTTATTCGAAGAAGGGAGCTaGATTGGCAGAACTATCTGCTCCATGCCTGGAGCTTCCAGCGTC +
Preference number: 6 (lower is better)
Translates to: RPNSLQLWILFEEGS*IGRTICSMPGASSV
Trigger: GACGCTGGAAGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS TCA 72 bp ACCACTGAGCTACCTCATCGCCACAATCTCTGCCTTTaGTGTCGAGACCAAACAGCCTGCAGTTGTGGATCT +
Preference number: 6 (lower is better)
Translates to: TTELPHRHNLCL*CRDQTACSCGS
Trigger: AGATCCACAACTGCAGGCTGTTTGGTCTCGACATCAAAGGCAGAGATTGTGGCGATGAGGTAGCTCAGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS TCA 72 bp GCCTGCAGTTGTGGATCTTATTCGAAGAAGGGAGCTTaGTTGGCAGAACTATCTGCTCCATGCCTGGAGCTT +
Preference number: 6 (lower is better)
Translates to: ACSCGSYSKKGA*LAELSAPCLEL
Trigger: AAGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CCA 72 bp GCAGTTGTGGATCTTATTCGAAGAAGGGAGCTTGATTaGCAGAACTATCTGCTCCATGCCTGGAGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: AVVDLIRRRELD*QNYLLHAWSFQ
Trigger: CTGGAAGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 72 bp AGCCTGCAGTTGTGGATCTTATTCGAAGAAGGGAGCTaGATTGGCAGAACTATCTGCTCCATGCCTGGAGCT +
Preference number: 6 (lower is better)
Translates to: SLQLWILFEEGS*IGRTICSMPGA
Trigger: AGCTCCAGGCATGGAGCAGATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 90 bp TGTTCTTCCTTTCATGCTGGTATCAAACTGAACCAACCTGTAGGCTaGCGTCTTCAGGTAGTTGGTGAACCACTGAGCTACCTCATCGCC +
Preference number: 6 (lower is better)
Translates to: CSSFHAGIKLNQPVG*RLQVVGEPLSYLIA
Trigger: GGCGATGAGGTAGCTCAGTGGTTCACCAACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAAAGGAAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS TCA 72 bp CGAAAGCCTCACAGCCTGACACCACGATGTTTGGCCTaGAATATTCCATCTTCACTTTCTTCTTCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: RKPHSLTPRCLA*NIPSSLSSSAW
Trigger: CCAGGCTGAAGAAGAAAGTGAAGATGGAATATTTCAGGCCAAACATCGTGGTGTCAGGCTGTGAGGCTTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CCA 72 bp CTGCCTTTGATGTCGAGACCAAACAGCCTGCAGTTGTaGATCTTATTCGAAGAAGGGAGCTTGATTGGCAGA +
Preference number: 6 (lower is better)
Translates to: LPLMSRPNSLQL*ILFEEGSLIGR
Trigger: TCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGGTCTCGACATCAAAGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 90 bp TCGCCACAATCTCTGCCTTTGATGTCGAGACCAAACAGCCTGCAGTaGTGGATCTTATTCGAAGAAGGGAGCTTGATTGGCAGAACTATC +
Preference number: 6 (lower is better)
Translates to: SPQSLPLMSRPNSLQ*WILFEEGSLIGRTI
Trigger: GATAGTTCTGCCAATCAAGCTCCCTTCTTCGAATAAGATCCACAACTGCAGGCTGTTTGGTCTCGACATCAAAGGCAGAGATTGTGGCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 72 bp TTTCATGCTGGTATCAAACTGAACCAACCTGTAGGCTaGCGTCTTCAGGTAGTTGGTGAACCACTGAGCTAC +
Preference number: 6 (lower is better)
Translates to: FHAGIKLNQPVG*RLQVVGEPLSY
Trigger: GTAGCTCAGTGGTTCACCAACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS GCA 72 bp CAGAAGGGTAAAGTTTCTTCGTTGTTCTTCCTTTCATaGTGGTATCAAACTGAACCAACCTGTAGGCTTGCG +
Preference number: 6 (lower is better)
Translates to: QKGKVSSLFFLS*WYQTEPTCRLA
Trigger: CGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAAAGGAAGAACAACGAAGAAACTTTACCCTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CCA 72 bp TCCACCGAGAAATACATCCCAAAAAGTGGAGATGACTaGTATATACTCTTCACAGAAGGATCACACAGGCGA +
Preference number: 6 (lower is better)
Translates to: STEKYIPKSGDD*YILFTEGSHRR
Trigger: TCGCCTGTGTGATCCTTCTGTGAAGAGTATATACCAGTCATCTCCACTTTTTGGGATGTATTTCTCGGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS TCA 72 bp AATATTCCATCTTCACTTTCTTCTTCAGCCTGGTGTTaGGATCGACTAAGGAGGCTTCAGAAATCAGGTGGA +
Preference number: 6 (lower is better)
Translates to: NIPSSLSSSAWC*DRLRRLQKSGG
Trigger: TCCACCTGATTTCTGAAGCCTCCTTAGTCGATCTCAACACCAGGCTGAAGAAGAAAGTGAAGATGGAATATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS TCA 72 bp CTTCTCCACCGAGAAATACATCCCAAAAAGTGGAGATaGCTGGTATATACTCTTCACAGAAGGATCACACAG +
Preference number: 6 (lower is better)
Translates to: LLHREIHPKKWR*LVYTLHRRITQ
Trigger: CTGTGTGATCCTTCTGTGAAGAGTATATACCAGTCATCTCCACTTTTTGGGATGTATTTCTCGGTGGAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068725.10
CDS CAA 72 bp AAATATTCCATCTTCACTTTCTTCTTCAGCCTGGTGTaGAGATCGACTAAGGAGGCTTCAGAAATCAGGTGG +
Preference number: 6 (lower is better)
Translates to: KYSIFTFFFSLV*RSTKEASEIRW
Trigger: CCACCTGATTTCTGAAGCCTCCTTAGTCGATCTCAACACCAGGCTGAAGAAGAAAGTGAAGATGGAATATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4
CDS CAA 90 bp CCTCATAGTTCTGAAGGTAACTTTCAGAAGGGTAAAGTTTCTTCGTaGTTCTTCCTTTCATGCTGGTATCAAACTGAACCAACCTGTAGG +
Preference number: 6 (lower is better)
Translates to: PHSSEGNFQKGKVSS*FFLSCWYQTEPTCR
Trigger: CCTACAGGTTGGTTCAGTTTGATACCAGCATGAAAGGAAGAACAACGAAGAAACTTTACCCTTCTGAAAGTTACCTTCAGAACTATGAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068725.10
ENSMUST00000161821.4