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Pregenerated sensors for MT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031757

Ensembl transcript IDs: ENSMUST00000034207.8

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp CATGAATGGAAACTTTATTACTCCAAGAACTTTACATaGACATCACCTGCCCCGCATGTGGGCACACATATA +
Preference number: 3 (lower is better)
Translates to: HEWKLYYSKNFT*TSPAPHVGTHI
Trigger: TATATGTGTGCCCACATGCGGGGCAGGTGATGTCCATGTAAAGTTCTTGGAGTAATAAAGTTTCCATTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
3UTR GCA 72 bp ACTTTATTACTCCAAGAACTTTACATGGACATCACCTaGCCCGCATGTGGGCACACATATAAAAAGTACAAT +
Preference number: 3 (lower is better)
Translates to: TLLLQELYMDIT*PACGHTYKKYN
Trigger: ATTGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCATGTAAAGTTCTTGGAGTAATAAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS-3UTR GCA 90 bp AACTTTACATGGACATCACCTGCCCCGCATGTGGGCACACATATAAAAAGTACATACAGCTGCAGGTTGTaGATTTGCAATTATCTCCGC +
Preference number: 4 (lower is better)
Translates to: NFTWTSPAPHVGTHIKSTYSCRL*ICNYLR
Trigger: GCGGAGATAATTGCAAATGCACAACCTGCAGCTGTA...TGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCATGTAAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS-3UTR GCA 90 bp TGGACATCACCTGCCCCGCATGTGGGCACACATATAAAAAGTACAATTTATTATTGCAGGTTGTGCATTTaGAATTATCTCCGCAGATGC +
Preference number: 4 (lower is better)
Translates to: WTSPAPHVGTHIKSTIYYCRLCI*NYLRRC
Trigger: GCATCTGCGGAGATAATTGCAAATGCACAACCTGCA...ATAATAAATTGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS-3UTR GCA 90 bp TGGACATCACCTGCCCCGCATGTGGGCACACATATAAAAAGTACAATTTATTATGACAGGTTTTACAGCTaGAGGTTGTGCATTTGCAAT +
Preference number: 4 (lower is better)
Translates to: WTSPAPHVGTHIKSTIYYDRFYS*RLCICN
Trigger: ATTGCAAATGCACAACCTGCAGCTGTAAAACCTGTC...ATAATAAATTGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS-3UTR CAA 90 bp TGGACATCACCTGCCCCGCATGTGGGCACACATATAAAAAGTACAATTTATTATCAGCCCCGGGCACACTaGGCACAGCCTGGGGGACAG +
Preference number: 5 (lower is better)
Translates to: WTSPAPHVGTHIKSTIYYQPRAH*AQPGGQ
Trigger: CTGTCCCCCAGGCTGTGCCAAGTGTGCCCGGGGCTG...ATAATAAATTGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS GCA 90 bp GACAGCAGCTTTTACGACAGGTTTTACAGCTGCAGGTTGTGCATTTaGAATTATCTCCGCAGATGCAGATCCCTCCAGACATACACGTGC +
Preference number: 5 (lower is better)
Translates to: DSSFYDRFYSCRLCI*NYLRRCRSLQTYTC
Trigger: GCACGTGTATGTCTGGAGGGATCTGCATCTGCGGAGATAATTGCAAATGCACAACCTGCAGCTGTAAAACCTGTCGTAAAAGCTGCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS-3UTR CAA 90 bp AACTTTACATGGACATCACCTGCCCCGCATGTGGGCACACATATAAAAAGTACACTGCAGGTTGTGCATTaGCAATTATCTCCGCAGATG +
Preference number: 5 (lower is better)
Translates to: NFTWTSPAPHVGTHIKSTLQVVH*QLSPQM
Trigger: CATCTGCGGAGATAATTGCAAATGCACAACCTGCAG...TGTACTTTTTATATGTGTGCCCACATGCGGGGCAGGTGATGTCCATGTAAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS GCA 72 bp AGCTGCAGGTTGTGCATTTGCAATTATCTCCGCAGATaGAGATCCCTCCAGACATACACGTGCATTCCCCAG +
Preference number: 6 (lower is better)
Translates to: SCRLCICNYLRR*RSLQTYTCIPQ
Trigger: CTGGGGAATGCACGTGTATGTCTGGAGGGATCTGCATCTGCGGAGATAATTGCAAATGCACAACCTGCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS CAA 90 bp GGACAGCAGCTTTTACGACAGGTTTTACAGCTGCAGGTTGTGCATTaGCAATTATCTCCGCAGATGCAGATCCCTCCAGACATACACGTG +
Preference number: 6 (lower is better)
Translates to: GQQLLRQVLQLQVVH*QLSPQMQIPPDIHV
Trigger: CACGTGTATGTCTGGAGGGATCTGCATCTGCGGAGATAATTGCAAATGCACAACCTGCAGCTGTAAAACCTGTCGTAAAAGCTGCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS GCA 72 bp AGCAGGGACAGCAGCTTTTACGACAGGTTTTACAGCTaGAGGTTGTGCATTTGCAATTATCTCCGCAGATGC +
Preference number: 6 (lower is better)
Translates to: SRDSSFYDRFYS*RLCICNYLRRC
Trigger: GCATCTGCGGAGATAATTGCAAATGCACAACCTGCAGCTGTAAAACCTGTCGTAAAAGCTGCTGTCCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8
CDS CAA 72 bp CTTTTACGACAGGTTTTACAGCTGCAGGTTGTGCATTaGCAATTATCTCCGCAGATGCAGATCCCTCCAGAC +
Preference number: 6 (lower is better)
Translates to: LLRQVLQLQVVH*QLSPQMQIPPD
Trigger: GTCTGGAGGGATCTGCATCTGCGGAGATAATTGCAAATGCACAACCTGCAGCTGTAAAACCTGTCGTAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034207.8