RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MT3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031760

Ensembl transcript IDs: ENSMUST00000034211.10, ENSMUST00000211915.2, ENSMUST00000211930.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTTaGCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCAGGTCT +
Preference number: 1 (lower is better)
Translates to: RAEESSMGGWTVIRL*PGQVALPSYCHIRS
Trigger: AGACCTGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR CCA 90 bp GGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTaGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCA +
Preference number: 1 (lower is better)
Translates to: GICLHQRAEESSMGG*TVIRLCPGQVALPS
Trigger: TGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR CCA 90 bp CTGATGTCGGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATaGGAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTC +
Preference number: 1 (lower is better)
Translates to: LMSASVSIKGQRKAV*EAGQSSGFAQDRWL
Trigger: GAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCCGACATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR CAA 90 bp AAGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTaGCCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCAGGTC +
Preference number: 2 (lower is better)
Translates to: KGRGKQYGRLDSHQA*PRTGGSPFILPHQV
Trigger: GACCTGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR GCA 72 bp GAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTTaGCCAGGACAGGTGGCTCTCCCTTCATACTGCCAC +
Preference number: 3 (lower is better)
Translates to: ESSMGGWTVIRL*PGQVALPSYCH
Trigger: GTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR CCA 72 bp CTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTaGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCT +
Preference number: 3 (lower is better)
Translates to: LHQRAEESSMGG*TVIRLCPGQVA
Trigger: AGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
3UTR CCA 72 bp CCTTGGGGATCCTCGGGCTCTGGAAAAATCGAAGAGTaGGGCTCAGCTTTCAAAGCGGCTATCTTAATAGCT +
Preference number: 3 (lower is better)
Translates to: PWGSSGSGKIEE*GSAFKAAILIA
Trigger: AGCTATTAAGATAGCCGCTTTGAAAGCTGAGCCCCACTCTTCGATTTTTCCAGAGCCCGAGGATCCCCAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS-3UTR CCA 90 bp AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAAAGTGTCTGGTGGGGGTaGGGTGGGCGCGGCGGGAGG +
Preference number: 4 (lower is better)
Translates to: KEQIEETPQSLRRAKALQSVWWG*GGRGGR
Trigger: CCTCCCGCCGCGCCCACCCCACCCCCACCAGACACT...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS-3UTR GCA 90 bp TCGGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGCAGCATCCATGGTACTaGAGTGACTGCCGGGCCTTC +
Preference number: 4 (lower is better)
Translates to: SASVSIKGQRKAVWEAGQQHPWY*SDCRAF
Trigger: GAAGGCCCGGCAGTCACTGCAGTACCATGGATGCTG...CTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
CDS-3UTR TCA 90 bp CAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCATCCATGGTACTGCAGTaGCTGCCGGGCCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: QSSGFAQDRWLSLHTATSSMVLQ*LPGLLL
Trigger: AAGAAGAAGGCCCGGCAGTCACTGCAGTACCATGGA...TGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
CDS-3UTR CCA 90 bp AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAATTGCTTCATAGTGTCTaGTGGGGGTGGGGTGGGCGC +
Preference number: 4 (lower is better)
Translates to: KEQIEETPQSLRRAKALQLLHSV*WGWGGR
Trigger: GCGCCCACCCCACCCCCACCAGACACTATGAAGCAA...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS-3UTR GCA 90 bp AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAATGCAGCAGGAAGCTTTaGTTCATAGTGTCTGGTGGG +
Preference number: 4 (lower is better)
Translates to: KEQIEETPQSLRRAKALQCSRKL*FIVSGG
Trigger: CCCACCAGACACTATGAAGCAAAGCTTCCTGCTGCA...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS-3UTR GCA 90 bp CTCAGCTTTCAAAGCGGCTATCTTAATAGCTTCCGGAAATTCATCAAAATATCCCGGTATCTGAAGGTCTaGAGCAGGAAGCTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: LSFQSGYLNSFRKFIKISRYLKV*SRKLCF
Trigger: GAAGCAAAGCTTCCTGCTGCAGACCTTCAGATACCG...GGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAAGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS GCA 90 bp AGCAGCTGCATTTCTCGGCCTCTGCCTTGGCCCCCTCTTCACCTTTaGACACACAGTCCTTGGCACACTTCTCACATCCGGCAGGGCAGC +
Preference number: 5 (lower is better)
Translates to: SSCISRPLPWPPLHL*THSPWHTSHIRQGS
Trigger: GCTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034211.10
CDS-3UTR CAA 90 bp TGGGAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATGTGCATTTGCAGCCCTaGCACTTGCATTTGTCCGAG +
Preference number: 5 (lower is better)
Translates to: WEAGQSSGFAQDRWLSLHVHLQP*HLHLSE
Trigger: CTCGGACAAATGCAAGTGCAAGGGCTGCAAATGCAC...ATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
CDS-3UTR CAA 90 bp GAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATACTTGCCGGGCCTTCTTCTaGCAGTTCGTGCATTTGCAG +
Preference number: 5 (lower is better)
Translates to: EAGQSSGFAQDRWLSLHTCRAFF*QFVHLQ
Trigger: CTGCAAATGCACGAACTGCAAGAAGAAGGCCCGGCA...AGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211915.2
CDS-3UTR CAA 90 bp CTCAGCTTTCAAAGCGGCTATCTTAATAGCTTCCGGAAATTCATCAAAATATCCGTGCATTTGCAGCCCTaGCACTTGCATTTGTCCGAG +
Preference number: 5 (lower is better)
Translates to: LSFQSGYLNSFRKFIKISVHLQP*HLHLSE
Trigger: CTCGGACAAATGCAAGTGCAAGGGCTGCAAATGCAC...GGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAAGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211930.2
CDS CAA 90 bp CAGCAGCTGCATTTCTCGGCCTCTGCCTTGGCCCCCTCTTCACCTTaGCACACACAGTCCTTGGCACACTTCTCACATCCGGCAGGGCAG +
Preference number: 6 (lower is better)
Translates to: QQLHFSASALAPSSP*HTQSLAHFSHPAGQ
Trigger: CTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034211.10