Pregenerated sensors for MT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031760Ensembl transcript IDs: ENSMUST00000034211.10, ENSMUST00000211915.2, ENSMUST00000211930.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | AGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTTaGCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCAGGTCT | + |
Preference number: 1 (lower is better) Translates to: RAEESSMGGWTVIRL*PGQVALPSYCHIRS Trigger: AGACCTGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR CCA 90 bp | GGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTaGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCA | + |
Preference number: 1 (lower is better) Translates to: GICLHQRAEESSMGG*TVIRLCPGQVALPS Trigger: TGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR CCA 90 bp | CTGATGTCGGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATaGGAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTC | + |
Preference number: 1 (lower is better) Translates to: LMSASVSIKGQRKAV*EAGQSSGFAQDRWL Trigger: GAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCCGACATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR CAA 90 bp | AAGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTaGCCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCAGGTC | + |
Preference number: 2 (lower is better) Translates to: KGRGKQYGRLDSHQA*PRTGGSPFILPHQV Trigger: GACCTGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR GCA 72 bp | GAAAGCAGTATGGGAGGCTGGACAGTCATCAGGCTTTaGCCAGGACAGGTGGCTCTCCCTTCATACTGCCAC | + |
Preference number: 3 (lower is better) Translates to: ESSMGGWTVIRL*PGQVALPSYCH Trigger: GTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR CCA 72 bp | CTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTaGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCT | + |
Preference number: 3 (lower is better) Translates to: LHQRAEESSMGG*TVIRLCPGQVA Trigger: AGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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3UTR CCA 72 bp | CCTTGGGGATCCTCGGGCTCTGGAAAAATCGAAGAGTaGGGCTCAGCTTTCAAAGCGGCTATCTTAATAGCT | + |
Preference number: 3 (lower is better) Translates to: PWGSSGSGKIEE*GSAFKAAILIA Trigger: AGCTATTAAGATAGCCGCTTTGAAAGCTGAGCCCCACTCTTCGATTTTTCCAGAGCCCGAGGATCCCCAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS-3UTR CCA 90 bp | AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAAAGTGTCTGGTGGGGGTaGGGTGGGCGCGGCGGGAGG | + |
Preference number: 4 (lower is better) Translates to: KEQIEETPQSLRRAKALQSVWWG*GGRGGR Trigger: CCTCCCGCCGCGCCCACCCCACCCCCACCAGACACT...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS-3UTR GCA 90 bp | TCGGCATCTGTCTCCATCAAAGGGCAGAGGAAAGCAGTATGGGAGGCTGGACAGCAGCATCCATGGTACTaGAGTGACTGCCGGGCCTTC | + |
Preference number: 4 (lower is better) Translates to: SASVSIKGQRKAVWEAGQQHPWY*SDCRAF Trigger: GAAGGCCCGGCAGTCACTGCAGTACCATGGATGCTG...CTGTCCAGCCTCCCATACTGCTTTCCTCTGCCCTTTGATGGAGACAGATGCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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CDS-3UTR TCA 90 bp | CAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATACTGCCACATCATCCATGGTACTGCAGTaGCTGCCGGGCCTTCTTCTT | + |
Preference number: 4 (lower is better) Translates to: QSSGFAQDRWLSLHTATSSMVLQ*LPGLLL Trigger: AAGAAGAAGGCCCGGCAGTCACTGCAGTACCATGGA...TGATGTGGCAGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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CDS-3UTR CCA 90 bp | AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAATTGCTTCATAGTGTCTaGTGGGGGTGGGGTGGGCGC | + |
Preference number: 4 (lower is better) Translates to: KEQIEETPQSLRRAKALQLLHSV*WGWGGR Trigger: GCGCCCACCCCACCCCCACCAGACACTATGAAGCAA...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS-3UTR GCA 90 bp | AAAGAGCAGATTGAGGAGACCCCACAAAGCCTAAGAAGGGCCAAGGCACTACAATGCAGCAGGAAGCTTTaGTTCATAGTGTCTGGTGGG | + |
Preference number: 4 (lower is better) Translates to: KEQIEETPQSLRRAKALQCSRKL*FIVSGG Trigger: CCCACCAGACACTATGAAGCAAAGCTTCCTGCTGCA...TTGTAGTGCCTTGGCCCTTCTTAGGCTTTGTGGGGTCTCCTCAATCTGCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS-3UTR GCA 90 bp | CTCAGCTTTCAAAGCGGCTATCTTAATAGCTTCCGGAAATTCATCAAAATATCCCGGTATCTGAAGGTCTaGAGCAGGAAGCTTTGCTTC | + |
Preference number: 4 (lower is better) Translates to: LSFQSGYLNSFRKFIKISRYLKV*SRKLCF Trigger: GAAGCAAAGCTTCCTGCTGCAGACCTTCAGATACCG...GGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAAGCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS GCA 90 bp | AGCAGCTGCATTTCTCGGCCTCTGCCTTGGCCCCCTCTTCACCTTTaGACACACAGTCCTTGGCACACTTCTCACATCCGGCAGGGCAGC | + |
Preference number: 5 (lower is better) Translates to: SSCISRPLPWPPLHL*THSPWHTSHIRQGS Trigger: GCTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034211.10 |
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CDS-3UTR CAA 90 bp | TGGGAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATGTGCATTTGCAGCCCTaGCACTTGCATTTGTCCGAG | + |
Preference number: 5 (lower is better) Translates to: WEAGQSSGFAQDRWLSLHVHLQP*HLHLSE Trigger: CTCGGACAAATGCAAGTGCAAGGGCTGCAAATGCAC...ATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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CDS-3UTR CAA 90 bp | GAGGCTGGACAGTCATCAGGCTTTGCCCAGGACAGGTGGCTCTCCCTTCATACTTGCCGGGCCTTCTTCTaGCAGTTCGTGCATTTGCAG | + |
Preference number: 5 (lower is better) Translates to: EAGQSSGFAQDRWLSLHTCRAFF*QFVHLQ Trigger: CTGCAAATGCACGAACTGCAAGAAGAAGGCCCGGCA...AGTATGAAGGGAGAGCCACCTGTCCTGGGCAAAGCCTGATGACTGTCCAGCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211915.2 |
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CDS-3UTR CAA 90 bp | CTCAGCTTTCAAAGCGGCTATCTTAATAGCTTCCGGAAATTCATCAAAATATCCGTGCATTTGCAGCCCTaGCACTTGCATTTGTCCGAG | + |
Preference number: 5 (lower is better) Translates to: LSFQSGYLNSFRKFIKISVHLQP*HLHLSE Trigger: CTCGGACAAATGCAAGTGCAAGGGCTGCAAATGCAC...GGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAAGCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211930.2 |
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CDS CAA 90 bp | CAGCAGCTGCATTTCTCGGCCTCTGCCTTGGCCCCCTCTTCACCTTaGCACACACAGTCCTTGGCACACTTCTCACATCCGGCAGGGCAG | + |
Preference number: 6 (lower is better) Translates to: QQLHFSASALAPSSP*HTQSLAHFSHPAGQ Trigger: CTGCCCTGCCGGATGTGAGAAGTGTGCCAAGGACTGTGTGTGCAAAGGTGAAGAGGGGGCCAAGGCAGAGGCCGAGAAATGCAGCTGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034211.10 |