Pregenerated sensors for MT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031765

Ensembl transcript IDs: ENSMUST00000211807.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GAGTTCCCCGCCCCTAGCCTTAGCCGCCACCCAAGGTGTCCCAACTCACTCTTCAGTGCAGGAGCCGCCTaGGGAGGAGAAAGAAGACAG	+
Preference number: 2 (lower is better) Translates to: EFPAPSLSRHPRCPNSLFSAGAA*GGERRQ Trigger: CTGTCTTCTTTCTCCTCCCCAGGCGGCTCCTGCACT...GAAGAGTGAGTTGGGACACCTTGGGTGGCGGCTAAGGCTAGGGGCGGGGAACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR-3UTR TCA 90 bp	GAGTTCCCCGCCCCTAGCCTTAGCCGCCACCCAAGGTGTCCCAACTCACTCTTCTCCCCACTAACTGGGTaGTCAGGAACCGGACATTTG	+
Preference number: 2 (lower is better) Translates to: EFPAPSLSRHPRCPNSLFSPLTG*SGTGHL Trigger: CAAATGTCCGGTTCCTGATCACCCAGTTAGTGGGGA...GAAGAGTGAGTTGGGACACCTTGGGTGGCGGCTAAGGCTAGGGGCGGGGAACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR-3UTR TCA 90 bp	AGTTCCCCGCCCCTAGCCTTAGCCGCCACCCAAGGTGTCCCAACTCACTCTTCTAGAAAGAAGACAGCATaGGGGAGGCAGCATTACAGC	+
Preference number: 2 (lower is better) Translates to: SSPPLALAATQGVPTHSSRKKTA*GRQHYS Trigger: GCTGTAATGCTGCCTCCCTCATGCTGTCTTCTTTCT...AGAAGAGTGAGTTGGGACACCTTGGGTGGCGGCTAAGGCTAGGGGCGGGGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR-3UTR CCA 90 bp	AGTTCCCCGCCCCTAGCCTTAGCCGCCACCCAAGGTGTCCCAACTCACTCTTCTAAGTTTAGTAATGCCTaGGACTCAACCCAGATGTCC	+
Preference number: 2 (lower is better) Translates to: SSPPLALAATQGVPTHSSKFSNA*DSTQMS Trigger: GGACATCTGGGTTGAGTCCCAGGCATTACTAAACTT...AGAAGAGTGAGTTGGGACACCTTGGGTGGCGGCTAAGGCTAGGGGCGGGGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR GCA 72 bp	AAGGAGGAGGAAGAGGTCAGCCTGGCTGAAGACCTCTaGTTCCTGTCCCCAACAGAGAAGACCTCGGTTTTT	+
Preference number: 3 (lower is better) Translates to: KEEEEVSLAEDL*FLSPTEKTSVF Trigger: AAAAACCGAGGTCTTCTCTGTTGGGGACAGGAAGCAGAGGTCTTCAGCCAGGCTGACCTCTTCCTCCTCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR CCA 72 bp	AGTTCTCTGTATAGTTCTGTCCCCGAGACAATACAATaGCCTCCGGGAAGCAAAGGACATTTCTCAGAGCCA	+
Preference number: 3 (lower is better) Translates to: SSLYSSVPETIQ*PPGSKGHFSEP Trigger: TGGCTCTGAGAAATGTCCTTTGCTTCCCGGAGGCCATTGTATTGTCTCGGGGACAGAACTATACAGAGAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
3UTR TCA 72 bp	TTTTCTCCTCACAGGTTAAGTCAGGGATTATGTCTTTaGGTCCCAAGACATAAAGGTCCTTCACCTCTTTCT	+
Preference number: 3 (lower is better) Translates to: FSPHRLSQGLCL*VPRHKGPSPLS Trigger: AGAAAGAGGTGAAGGACCTTTATGTCTTGGGACTCAAAGACATAATCCCTGACTTAACCTGTGAGGAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
CDS-3UTR CCA 90 bp	AGCCTAGCCCCACTTTTCTCCTCACAGGTTAAGTCAGGGATTATGTCTTTGAGTTCTGCGGTCCCAACTTaGTATTCTAAAGACCAAGGA	+
Preference number: 4 (lower is better) Translates to: SLAPLFSSQVKSGIMSLSSAVPT*YSKDQG Trigger: TCCTTGGTCTTTAGAATACCAAGTTGGGACCGCAGA...ACTCAAAGACATAATCCCTGACTTAACCTGTGAGGAGAAAAGTGGGGCTAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211807.2
CDS CCA 72 bp	TCTACAACTCGGGGATTCCGCTCTGCGGTCCCAACTTaGTATTCTAAAGACCAAGGATCGGGAGTCTTACCG	+
Preference number: 6 (lower is better) Translates to: STTRGFRSAVPT*YSKDQGSGVLP Trigger: CGGTAAGACTCCCGATCCTTGGTCTTTAGAATACCAAGTTGGGACCGCAGAGCGGAATCCCCGAGTTGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211807.2