Pregenerated sensors for MT-ND5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064367

Ensembl transcript IDs: ENSMUST00000082418.1

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	TTAAGCCTTTTTGGTTGGTTGTTAAAGTGGTTATGTTaGTGTGAAGAGTTGAGGTGGATTTTGGGATGGTTT	+
Preference number: 6 (lower is better) Translates to: LSLFGWLLKWLC*CEELRWILGWF Trigger: AAACCATCCCAAAATCCACCTCAACTCTTCACACAAACATAACCACTTTAACAACCAACCAAAAAGGCTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000082418.1
CDS CAA 72 bp	GAGAATTTGATTGATGTGGTGGTGTACAGTGGGAAGTaGATGTGTTTAATTAGGTTTGATATTGAAATTAGG	+
Preference number: 6 (lower is better) Translates to: ENLIDVVVYSGK*MCLIRFDIEIR Trigger: CCTAATTTCAATATCAAACCTAATTAAACACATCAACTTCCCACTGTACACCACCACATCAATCAAATTCTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082418.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu