Pregenerated sensors for MT-ND4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064363

Ensembl transcript IDs: ENSMUST00000082414.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTAATTAGTTTTGGACTGGTAGTTAGAAGAATAAGTGGAATTATGTaGAGGGCTATTAGTGTTAGTTCTCGTGTGTGTGAGGGTTGGAGG	+
Preference number: 5 (lower is better) Translates to: VISFGLVVRRISGIM*RAISVSSRVCEGWR Trigger: CCTCCAACCCTCACACACACGAGAACTAACACTAATAGCCCTTCACATAATTCCACTTATTCTTCTAACTACCAGTCCAAAACTAATTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000082414.1
CDS CCA 72 bp	AGGGCTATTAGTGTTAGTTCTCGTGTGTGTGAGGGTTaGAGGTTAATTATATGGTTGGTTAGTTTGCCGCGT	+
Preference number: 6 (lower is better) Translates to: RAISVSSRVCEG*RLIIWLVSLPR Trigger: ACGCGGCAAACTAACCAACCATATAATTAACCTCCAACCCTCACACACACGAGAACTAACACTAATAGCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082414.1
CDS TCA 72 bp	TTTGGACTGGTAGTTAGAAGAATAAGTGGAATTATGTaGAGGGCTATTAGTGTTAGTTCTCGTGTGTGTGAG	+
Preference number: 6 (lower is better) Translates to: FGLVVRRISGIM*RAISVSSRVCE Trigger: CTCACACACACGAGAACTAACACTAATAGCCCTTCACATAATTCCACTTATTCTTCTAACTACCAGTCCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082414.1
CDS CCA 72 bp	TGGAGGTTAATTATATGGTTGGTTAGTTTGCCGCGTTaGGTGGTAATAATTATGTATATTGAGTATATACCT	+
Preference number: 6 (lower is better) Translates to: WRLIIWLVSLPR*VVIIMYIEYIP Trigger: AGGTATATACTCAATATACATAATTATTACCACCCAACGCGGCAAACTAACCAACCATATAATTAACCTCCA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000082414.1

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