Pregenerated sensors for MSX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025469Ensembl transcript IDs: ENSMUST00000055353.9, ENSMUST00000172775.4
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGACAGGCCCGGCGAGGATCCCAGGAACCGCGTTGCCGCCGAAAGTaGCCGCGGAGCTGTGCAGCTGGGTGCCCAGCGGGAAGGGCAGGG | + |
|
Preference number: 1 (lower is better) Translates to: RQARRGSQEPRCRRK*PRSCAAGCPAGRAG Trigger: CCCTGCCCTTCCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCACTTTCGGCGGCAACGCGGTTCCTGGGATCCTCGCCGGGCCTGTCG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR GCA 90 bp | GAACCGCGTTGCCGCCGAAAGTGGCCGCGGAGCTGTGCAGCTGGGTaGCCAGCGGGAAGGGCAGGGCAAACGCCGCCGGCAGTAGTGGCT | + |
|
Preference number: 1 (lower is better) Translates to: EPRCRRKWPRSCAAG*PAGRAGQTPPAVVA Trigger: AGCCACTACTGCCGGCGGCGTTTGCCCTGCCCTTCCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCACTTTCGGCGGCAACGCGGTTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR CCA 90 bp | CCAGGAACCGCGTTGCCGCCGAAAGTGGCCGCGGAGCTGTGCAGCTaGGTGCCCAGCGGGAAGGGCAGGGCAAACGCCGCCGGCAGTAGT | + |
|
Preference number: 1 (lower is better) Translates to: PGTALPPKVAAELCS*VPSGKGRANAAGSS Trigger: ACTACTGCCGGCGGCGTTTGCCCTGCCCTTCCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCACTTTCGGCGGCAACGCGGTTCCTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR CCA 90 bp | TTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGTCCTaGGCTGTGACTCCAGGGGACTGTTGTGAGCCCTCAACACACTCC | + |
|
Preference number: 1 (lower is better) Translates to: FLPCPKAGRRACQRS*AVTPGDCCEPSTHS Trigger: GGAGTGTGTTGAGGGCTCACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 90 bp | CCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGTCCTGGGCTGTaGCTCCAGGGGACTGTTGTGAGCCCTCAACACACTCCAGCTAAA | + |
|
Preference number: 1 (lower is better) Translates to: PARRLAGGPVKGPGL*LQGTVVSPQHTPAK Trigger: TTTAGCTGGAGTGTGTTGAGGGCTCACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 90 bp | TGGACCAGTGAAGGTCACGGGACAGCAGTTTTCCTGGAGCTGGCTTaGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCCCAACCAGA | + |
|
Preference number: 1 (lower is better) Translates to: WTSEGHGTAVFLELA*TAEHSPVLPFLPTR Trigger: TCTGGTTGGGAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCCAAGCCAGCTCCAGGAAAACTGCTGTCCCGTGACCTTCACTGGTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 90 bp | GCTGATGGACCAGTGAAGGTCACGGGACAGCAGTTTTCCTGGAGCTaGCTTGGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCCCAA | + |
|
Preference number: 1 (lower is better) Translates to: ADGPVKVTGQQFSWS*LGLPSIAQSFPSSQ Trigger: TTGGGAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCCAAGCCAGCTCCAGGAAAACTGCTGTCCCGTGACCTTCACTGGTCCATCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 90 bp | CCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGGCAGAGTaGATACAGGGAGCACACCCACTCCAGAAATACTTTGTCGACTGC | + |
|
Preference number: 1 (lower is better) Translates to: PAQSSLSEVLGVRAE*IQGAHPLQKYFVDC Trigger: GCAGTCGACAAAGTATTTCTGGAGTGGGTGTGCTCCCTGTATTCACTCTGCCCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 90 bp | GGGAGATCTGAGATGCTCAACTCTCACTTTCTTCTCTTTATTGACTaGACACCTGCTGGCAAGAGGCTAGAGGTTGGTCCCTGCTGCCTT | + |
|
Preference number: 1 (lower is better) Translates to: GRSEMLNSHFLLFID*TPAGKRLEVGPCCL Trigger: AAGGCAGCAGGGACCAACCTCTAGCCTCTTGCCAGCAGGTGTCCAGTCAATAAAGAGAAGAAAGTGAGAGTTGAGCATCTCAGATCTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 90 bp | TTCTTATGGAATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTaGAGTCCTCGGTGTCCGGGCAGAGTGAATACAGGGAGCACACCC | + |
|
Preference number: 1 (lower is better) Translates to: FLWNLFSYASSIEPL*SPRCPGRVNTGSTP Trigger: GGGTGTGCTCCCTGTATTCACTCTGCCCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAATTCCATAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR GCA 90 bp | AACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCCACAATGGGAGAGTGGCCGCGGAGCTGTaGAGCTGGGTGCCCAGCGGG | + |
|
Preference number: 2 (lower is better) Translates to: NSSGTFTGLTSYRTHNGRVAAEL*SWVPSG Trigger: CCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCAC...TCTCCCATTGTGGGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGCCGGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTCTTCCTGCAGCCGCTTaGCTTTGGCTCGGCGGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: RQPALRVTLLGPSQASPPLPAAA*LWLGGS Trigger: AGAACCGCCGAGCCAAAGCCAAGCGGCTGCAGGAAG...AGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCCGGCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR-3UTR TCA 90 bp | GTTTTCCTGGAGCTGGCTTGGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCAAAGGTCCTGGGCTGTaGCTCCAGGGGACTGTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: VFLELAWTAEHSPVLPFLKGPGL*LQGTVV Trigger: CACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTT...GAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCCAAGCCAGCTCCAGGAAAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR TCA 90 bp | TCCTTCCCTTCCTCCCAACCAGAGCATCCTAACCCTGGGCCATCTATCACTGTGGGTGTCCGGGCAGAGTaGATACAGGGAGCACACCCA | + |
|
Preference number: 2 (lower is better) Translates to: SFPSSQPEHPNPGPSITVGVRAE*IQGAHP Trigger: TGGGTGTGCTCCCTGTATTCACTCTGCCCGGACACC...CACAGTGATAGATGGCCCAGGGTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGTCAGCAAAAGTGTCCTGTaGAAACAGCCATGGGGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: RQVLPPLPEGWQEGLSKVSKSVL*KQPWGV Trigger: TACACCCCATGGCTGTTTCCACAGGACACTTTTGCT...GACCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR GCA 90 bp | CCCTCTGCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTGAATTTGTTTTCTTATaGCAGCTCAATCGAGCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: PSAGRFFLPCPKAGRRACEFVFL*QLNRAS Trigger: AGAGGCTCGATTGAGCTGGCATAAGAAAACAAATTC...ACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGCAGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR TCA 90 bp | CTCTGCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCATTCAGAAAAACAGATTaGTGTGGGCAAGGTTTTAGG | + |
|
Preference number: 2 (lower is better) Translates to: LCRQVLPPLPEGWQEGLSFRKTD*CGQGFR Trigger: CCTAAAACCTTGCCCACATCAATCTGTTTTTCTGAA...TGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGCAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR GCA 90 bp | GCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGGAATTTGTTTTCTTATaGCAGCTCAATCGAGCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: AGRFFLPCPKAGRRACQREFVFL*QLNRAS Trigger: AGAGGCTCGATTGAGCTGGCATAAGAAAACAAATTC...CCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR GCA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGCGGCAGGCAGAACTGTaGGCAACCCTGAGCCTAACC | + |
|
Preference number: 2 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRRQAEL*ATLSLT Trigger: GGTTAGGCTCAGGGTTGCGCACAGTTCTGCCTGCCG...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR GCA 90 bp | ACCGCACCCACAATGGGAGATCTGAGATGCTCAACTCTCACTTTCTTCTCTTTACGGCAGGCAGAACTGTaGGCAACCCTGAGCCTAACC | + |
|
Preference number: 2 (lower is better) Translates to: TAPTMGDLRCSTLTFFSLRQAEL*ATLSLT Trigger: GGTTAGGCTCAGGGTTGCGCACAGTTCTGCCTGCCG...TAAAGAGAAGAAAGTGAGAGTTGAGCATCTCAGATCTCCCATTGTGGGTGCGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGCCGGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTGTAAAAGTTTCCATTTaGTCACAACAGTTGGAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: RQPALRVTLLGPSQASPPVKVSI*SQQLER Trigger: TCTCTCCAACTGTTGTGACCAAATGGAAACTTTTAC...AGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCCGGCTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR TCA 90 bp | CAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCCACAATGTTTCAAGGACTATATaGCGGTGTGTTTTCTTTCAG | + |
|
Preference number: 2 (lower is better) Translates to: QSNSSGTFTGLTSYRTHNVSRTI*RCVFFQ Trigger: CTGAAAGAAAACACACCGTCATATAGTCCTTGAAAC...ATTGTGGGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR TCA 90 bp | TCCTACCGCACCCACAATGGGAGATCTGAGATGCTCAACTCTCACTTTCTTCTCGTTTCAAGGACTATATaGCGGTGTGTTTTCTTTCAG | + |
|
Preference number: 2 (lower is better) Translates to: SYRTHNGRSEMLNSHFLLVSRTI*RCVFFQ Trigger: CTGAAAGAAAACACACCGTCATATAGTCCTTGAAAC...GAGAAGAAAGTGAGAGTTGAGCATCTCAGATCTCCCATTGTGGGTGCGGTAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR TCA 90 bp | TGCTCAACTCTCACTTTCTTCTCTTTATTGACTGGACACCTGCTGGCAAGAGGCTTCAGAAAAACAGATTaGTGTGGGCAAGGTTTTAGG | + |
|
Preference number: 2 (lower is better) Translates to: CSTLTFFSLLTGHLLARGFRKTD*CGQGFR Trigger: CCTAAAACCTTGCCCACATCAATCTGTTTTTCTGAA...GCCTCTTGCCAGCAGGTGTCCAGTCAATAAAGAGAAGAAAGTGAGAGTTGAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR CCA 90 bp | CTCCAGCTAAAGTCTCTAGATTGCAGCAAAAGTGTCCTGTGGAAACAGCCATGGGTAAAAGTTTCCATTTaGTCACAACAGTTGGAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: LQLKSLDCSKSVLWKQPWVKVSI*SQQLER Trigger: TCTCTCCAACTGTTGTGACCAAATGGAAACTTTTAC...CCATGGCTGTTTCCACAGGACACTTTTGCTGCAATCTAGAGACTTTAGCTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 72 bp | GCGTTGCCGCCGAAAGTGGCCGCGGAGCTGTGCAGCTaGGTGCCCAGCGGGAAGGGCAGGGCAAACGCCGCC | + |
|
Preference number: 3 (lower is better) Translates to: ALPPKVAAELCS*VPSGKGRANAA Trigger: GGCGGCGTTTGCCCTGCCCTTCCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCACTTTCGGCGGCAACGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR CCA 72 bp | CTCTGCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTaGCAGGAGGGCCTGTCAAAGGTCCTGGGCTGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: LCRQVLPPLPEG*QEGLSKVLGCD Trigger: GTCACAGCCCAGGACCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGCAGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 72 bp | TGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGTCCTaGGCTGTGACTCCAGGGGACTGTTGTGAGCCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: CPKAGRRACQRS*AVTPGDCCEPS Trigger: TGAGGGCTCACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 72 bp | AGGCTGGCAGGAGGGCCTGTCAAAGGTCCTGGGCTGTaGCTCCAGGGGACTGTTGTGAGCCCTCAACACACT | + |
|
Preference number: 3 (lower is better) Translates to: RLAGGPVKGPGL*LQGTVVSPQHT Trigger: AGTGTGTTGAGGGCTCACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTTGACAGGCCCTCCTGCCAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 72 bp | GAAGGTCACGGGACAGCAGTTTTCCTGGAGCTGGCTTaGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: EGHGTAVFLELA*TAEHSPVLPFL Trigger: GAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCCAAGCCAGCTCCAGGAAAACTGCTGTCCCGTGACCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR-3UTR CAA 90 bp | CTTTTCGAAGAAGCTCAGAAGATGCTGGGGGCAGCAGCCACCCTTACATTAGGGGCTTCCTGCAGCCGCTaGGCTTTGGCTCGGCGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: LFEEAQKMLGAAATLTLGASCSR*ALARRF Trigger: GAACCGCCGAGCCAAAGCCAAGCGGCTGCAGGAAGC...CCCTAATGTAAGGGTGGCTGCTGCCCCCAGCATCTTCTGAGCTTCTTCGAAAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| 3UTR GCA 72 bp | TTCCATGTTCTCATGAACACACAACCAGCAGCCCTCTaGAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: FHVLMNTQPAAL*RQVLPPLPEGW Trigger: CCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGCAGAGGGCTGCTGGTTGTGTGTTCATGAGAACATGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 72 bp | TCGAGCCTCTCTGAAGTCCTCGGTGTCCGGGCAGAGTaGATACAGGGAGCACACCCACTCCAGAAATACTTT | + |
|
Preference number: 3 (lower is better) Translates to: SSLSEVLGVRAE*IQGAHPLQKYF Trigger: AAAGTATTTCTGGAGTGGGTGTGCTCCCTGTATTCACTCTGCCCGGACACCGAGGACTTCAGAGAGGCTCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR GCA 72 bp | AAAAGTTACCAGGAGCATCAGCGGCAGGCAGAACTGTaGGCAACCCTGAGCCTAACCAAGAGGTTAGGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: KSYQEHQRQAEL*ATLSLTKRLGL Trigger: AAGCCCTAACCTCTTGGTTAGGCTCAGGGTTGCGCACAGTTCTGCCTGCCGCTGATGCTCCTGGTAACTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 72 bp | TCAAAGGTCCTGGGCTGTGACTCCAGGGGACTGTTGTaGGCCCTCAACACACTCCAGCTAAAGTCTCTAGAT | + |
|
Preference number: 3 (lower is better) Translates to: SKVLGCDSRGLL*ALNTLQLKSLD Trigger: ATCTAGAGACTTTAGCTGGAGTGTGTTGAGGGCTCACAACAGTCCCCTGGAGTCACAGCCCAGGACCTTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR TCA 72 bp | AATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTaGAGTCCTCGGTGTCCGGGCAGAGTGAATACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: NLFSYASSIEPL*SPRCPGRVNTG Trigger: CCCTGTATTCACTCTGCCCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 72 bp | GAGATGCTCAACTCTCACTTTCTTCTCTTTATTGACTaGACACCTGCTGGCAAGAGGCTAGAGGTTGGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: EMLNSHFLLFID*TPAGKRLEVGP Trigger: GGGACCAACCTCTAGCCTCTTGCCAGCAGGTGTCCAGTCAATAAAGAGAAGAAAGTGAGAGTTGAGCATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CCA 72 bp | CTAGATTGCAGCAAAAGTGTCCTGTGGAAACAGCCATaGGGTGTATTAGTGCCCGTTGTCAGGTACCCTAAG | + |
|
Preference number: 3 (lower is better) Translates to: LDCSKSVLWKQP*GVLVPVVRYPK Trigger: CTTAGGGTACCTGACAACGGGCACTAATACACCCCATGGCTGTTTCCACAGGACACTTTTGCTGCAATCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR GCA 72 bp | TACTTTGTCGACTGCTTTGTAAGAAATAGGAAGAACTaGTTTTGTCTGTTTCAAGGACTATATGACGGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: YFVDCFVRNRKN*FCLFQGLYDGV Trigger: CACACCGTCATATAGTCCTTGAAACAGACAAAAGCAGTTCTTCCTATTTCTTACAAAGCAGTCGACAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR GCA 90 bp | GGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCGTGGCCGCGGAGCTGTaGAGCTGGGTGCCCAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: GTQSNSSGTFTGLTSYRTVAAEL*SWVPSG Trigger: CCCGCTGGGCACCCAGCTGCACAGCTCCGCGGCCAC...GGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | GGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCCCAACCAGAGCATCCTAACGCGGAGGGTGCAGGGTaGAGGGCTCGGGGCACGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GLPSIAQSFPSSQPEHPNAEGAG*RARGTW Trigger: CCACGTGCCCCGAGCCCTCCACCCTGCACCCTCCGC...GTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | GCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGCTTCCTGCAGCCGCTTaGCTTTGGCTCGGCGGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: AGRFFLPCPKAGRRACQRLPAAA*LWLGGS Trigger: AGAACCGCCGAGCCAAAGCCAAGCGGCTGCAGGAAG...CCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | CCAGGAGCATCAGCGGCAGGCAGAACTGTGCGCAACCCTGAGCCTAACCAAGAGCTGCGCGGTGGTGAATaGCGTCCGTGGTTTGCGATT | + |
|
Preference number: 4 (lower is better) Translates to: PGASAAGRTVRNPEPNQELRGGE*RPWFAI Trigger: AATCGCAAACCACGGACGCCATTCACCACCGCGCAG...CTCTTGGTTAGGCTCAGGGTTGCGCACAGTTCTGCCTGCCGCTGATGCTCCTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGGCGGAGGGTGCAGGGTaGAGGGCTCGGGGCACCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRAEGAG*RARGTL Trigger: CAAGGTGCCCCGAGCCCTCCACCCTGCACCCTCCGC...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS-3UTR GCA 90 bp | AGGCAGCCGGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTGCTTCTGGTGAAACTTaGGCTCAAGCGCCAGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: RQPALRVTLLGPSQASPPASGET*AQAPAA Trigger: AGCTGCTGGCGCTTGAGCGCAAGTTTCACCAGAAGC...AGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCCGGCTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR TCA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGGCAGCTGCGCGGTGGTaGATGGCGTCCGTGGTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRAAARW*MASVVC Trigger: GCAAACCACGGACGCCATTCACCACCGCGCAGCTGC...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | TCCTTCCCTTCCTCCCAACCAGAGCATCCTAACCCTGGGCCATCTATCACTGTGCTGCGCGGTGGTGAATaGCGTCCGTGGTTTGCGATT | + |
|
Preference number: 4 (lower is better) Translates to: SFPSSQPEHPNPGPSITVLRGGE*RPWFAI Trigger: AATCGCAAACCACGGACGCCATTCACCACCGCGCAG...CACAGTGATAGATGGCCCAGGGTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | GGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCCCAACCAGAGCATCCTAACCGGCGCGCTCCGCAATaGATAAGTATTGCTTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: GLPSIAQSFPSSQPEHPNRRAPQ*ISIASG Trigger: ACCAGAAGCAATACTTATCCATTGCGGAGCGCGCCG...GTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR TCA 90 bp | GGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCCCAACCAGAGCATCCTAACAAGTATTGCTTCTGGTaGAACTTGCGCTCAAGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: GLPSIAQSFPSSQPEHPNKYCFW*NLRSSA Trigger: GGCGCTTGAGCGCAAGTTTCACCAGAAGCAATACTT...GTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR GCA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGTCAAGCGCCAGCAGCTaGGCGGTGGTGAATGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRSSASS*AVVNGV Trigger: GACGCCATTCACCACCGCGCAGCTGCTGGCGCTTGA...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | GGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCTCCGTGGTTTGCGATTaGTTTTGTGTTTGCGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GTQSNSSGTFTGLTSYRTSVVCD*FCVCGG Trigger: CCCTCCGCAAACACAAAACCAATCGCAAACCACGGA...GGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | GTTTTCCTGGAGCTGGCTTGGACTGCCGAGCATAGCCCAGTCCTTCCCTTCCTCTCCGTGGTTTGCGATTaGTTTTGTGTTTGCGGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: VFLELAWTAEHSPVLPFLSVVCD*FCVCGG Trigger: CCCTCCGCAAACACAAAACCAATCGCAAACCACGGA...GAGGAAGGGAAGGACTGGGCTATGCTCGGCAGTCCAAGCCAGCTCCAGGAAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR GCA 90 bp | TCCTTCCCTTCCTCCCAACCAGAGCATCCTAACCCTGGGCCATCTATCACTGTGGATTGGTTTTGTGTTTaGGGAGGGTGCAGGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SFPSSQPEHPNPGPSITVDWFCV*GGCRVE Trigger: CTCCACCCTGCACCCTCCGCAAACACAAAACCAATC...CACAGTGATAGATGGCCCAGGGTTAGGATGCTCTGGTTGGGAGGAAGGGAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR TCA 90 bp | TATGGAATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGCAGCTGCGCGGTGGTaGATGGCGTCCGTGGTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: YGICFLMPAQSSLSEVLGAAARW*MASVVC Trigger: GCAAACCACGGACGCCATTCACCACCGCGCAGCTGC...ACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAATTCCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR GCA 90 bp | AAGTCTCTAGATTGCAGCAAAAGTGTCCTGTGGAAACAGCCATGGGGTGTATTATCAAGCGCCAGCAGCTaGGCGGTGGTGAATGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: KSLDCSKSVLWKQPWGVLSSASS*AVVNGV Trigger: GACGCCATTCACCACCGCGCAGCTGCTGGCGCTTGA...TAATACACCCCATGGCTGTTTCCACAGGACACTTTTGCTGCAATCTAGAGACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CCA 90 bp | ACTGTGAAATTCCATGTTCTCATGAACACACAACCAGCAGCCCTCTGCAGGCAGCGGCGCGCTCCGCAATaGATAAGTATTGCTTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: TVKFHVLMNTQPAALCRQRRAPQ*ISIASG Trigger: ACCAGAAGCAATACTTATCCATTGCGGAGCGCGCCG...CTGCCTGCAGAGGGCTGCTGGTTGTGTGTTCATGAGAACATGGAATTTCACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CAA 72 bp | GTGAGCCCTCAACACACTCCAGCTAAAGTCTCTAGATaGCAGCAAAAGTGTCCTGTGGAAACAGCCATGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VSPQHTPAKVSR*QQKCPVETAMG Trigger: CCCCATGGCTGTTTCCACAGGACACTTTTGCTGCAATCTAGAGACTTTAGCTGGAGTGTGTTGAGGGCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR TCA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGAAGTATTGCTTCTGGTaGAACTTGCGCTCAAGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRKYCFW*NLRSSA Trigger: GGCGCTTGAGCGCAAGTTTCACCAGAAGCAATACTT...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR GCA 90 bp | CTCCAGCTAAAGTCTCTAGATTGCAGCAAAAGTGTCCTGTGGAAACAGCCATGGGATTGGTTTTGTGTTTaGGGAGGGTGCAGGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LQLKSLDCSKSVLWKQPWDWFCV*GGCRVE Trigger: CTCCACCCTGCACCCTCCGCAAACACAAAACCAATC...CCATGGCTGTTTCCACAGGACACTTTTGCTGCAATCTAGAGACTTTAGCTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| 3UTR CAA 72 bp | CAAGTCCTAGATCAGTTAGGGCTACATAGTGACGATTaGGTCTCAAAACAAAACCAAACCTATCTGGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: QVLDQLGLHSDD*VSKQNQTYLVS Trigger: GGAAACCAGATAGGTTTGGTTTTGTTTTGAGACCAAATCGTCACTATGTAGCCCTAACTGATCTAGGACTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS-3UTR CAA 90 bp | GCAGGCAGGTTCTTCCTCCCCTGCCCGAAGGCTGGCAGGAGGGCCTGTCAAAGGAGGGCTCGGGGCACCTaGGACTTTCGAGCCTTGACA | + |
|
Preference number: 5 (lower is better) Translates to: AGRFFLPCPKAGRRACQRRARGT*DFRALT Trigger: TGTCAAGGCTCGAAAGTCCAAGGTGCCCCGAGCCCT...CCTTTGACAGGCCCTCCTGCCAGCCTTCGGGCAGGGGAGGAAGAACCTGCCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS CCA 90 bp | CGTCCGTGGTTTGCGATTGGTTTTGTGTTTGCGGAGGGTGCAGGGTaGAGGGCTCGGGGCACCTTGGACTTTCGAGCCTTGACAGCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: RPWFAIGFVFAEGAG*RARGTLDFRALTAR Trigger: CCGCGCTGTCAAGGCTCGAAAGTCCAAGGTGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS-3UTR CAA 90 bp | CCAGGAGCATCAGCGGCAGGCAGAACTGTGCGCAACCCTGAGCCTAACCAAGAGGGTTTGCGATTGGTTTaGTGTTTGCGGAGGGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: PGASAAGRTVRNPEPNQEGLRLV*CLRRVQ Trigger: CTGCACCCTCCGCAAACACAAAACCAATCGCAAACC...CTCTTGGTTAGGCTCAGGGTTGCGCACAGTTCTGCCTGCCGCTGATGCTCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CAA 90 bp | GGCACTCAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCGGTTTGCGATTGGTTTaGTGTTTGCGGAGGGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: GTQSNSSGTFTGLTSYRTGLRLV*CLRRVQ Trigger: CTGCACCCTCCGCAAACACAAAACCAATCGCAAACC...GGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTGAGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CAA 90 bp | TCCTACCGCACCCACAATGGGAGATCTGAGATGCTCAACTCTCACTTTCTTCTCGCTTCCTGCAGCCGCTaGGCTTTGGCTCGGCGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: SYRTHNGRSEMLNSHFLLASCSR*ALARRF Trigger: GAACCGCCGAGCCAAAGCCAAGCGGCTGCAGGAAGC...GAGAAGAAAGTGAGAGTTGAGCATCTCAGATCTCCCATTGTGGGTGCGGTAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172775.4 |
||
| CDS-3UTR CAA 90 bp | CAGAGTAACTCTTCTGGGACCTTCACAGGCCTCACCTCCTACCGCACCCACAATCGATTGGTTTTGTGTTaGCGGAGGGTGCAGGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: QSNSSGTFTGLTSYRTHNRLVLC*RRVQGG Trigger: TCCACCCTGCACCCTCCGCAAACACAAAACCAATCG...ATTGTGGGTGCGGTAGGAGGTGAGGCCTGTGAAGGTCCCAGAAGAGTTACTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS-3UTR CAA 90 bp | ATTTGTTTTCTTATGCCAGCTCAATCGAGCCTCTCTGAAGTCCTCGGTGTCCGGCGATTGGTTTTGTGTTaGCGGAGGGTGCAGGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ICFLMPAQSSLSEVLGVRRLVLC*RRVQGG Trigger: TCCACCCTGCACCCTCCGCAAACACAAAACCAATCG...CCGGACACCGAGGACTTCAGAGAGGCTCGATTGAGCTGGCATAAGAAAACAAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS CAA 90 bp | AGCGCCAGCAGCTGCGCGGTGGTGAATGGCGTCCGTGGTTTGCGATaGGTTTTGTGTTTGCGGAGGGTGCAGGGTGGAGGGCTCGGGGCA | + |
|
Preference number: 6 (lower is better) Translates to: SASSCAVVNGVRGLR*VLCLRRVQGGGLGA Trigger: TGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGCGCAGCTGCTGGCGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS CAA 90 bp | AGCAGCTGCGCGGTGGTGAATGGCGTCCGTGGTTTGCGATTGGTTTaGTGTTTGCGGAGGGTGCAGGGTGGAGGGCTCGGGGCACGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SSCAVVNGVRGLRLV*CLRRVQGGGLGARG Trigger: CCCACGTGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGCGCAGCTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172775.4 |
||
| CDS CAA 90 bp | AGCAGCTGCGCGGTGGTGAATGGCGTCCGTGGTTTGCGATTGGTTTaGTGTTTGCGGAGGGTGCAGGGTGGAGGGCTCGGGGCACCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: SSCAVVNGVRGLRLV*CLRRVQGGGLGAPW Trigger: CCAAGGTGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGCGCAGCTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS CAA 72 bp | GCGGTGGTGAATGGCGTCCGTGGTTTGCGATTGGTTTaGTGTTTGCGGAGGGTGCAGGGTGGAGGGCTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: AVVNGVRGLRLV*CLRRVQGGGLG Trigger: CCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS CAA 72 bp | AGCTGCGCGGTGGTGAATGGCGTCCGTGGTTTGCGATaGGTTTTGTGTTTGCGGAGGGTGCAGGGTGGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: SCAVVNGVRGLR*VLCLRRVQGGG Trigger: CCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGCGCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS CAA 72 bp | GCCAGCAGCTGCGCGGTGGTGAATGGCGTCCGTGGTTaGCGATTGGTTTTGTGTTTGCGGAGGGTGCAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: ASSCAVVNGVRG*RLVLCLRRVQG Trigger: ACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGACGCCATTCACCACCGCGCAGCTGCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055353.9 ENSMUST00000172775.4 |
||
| CDS GCA 72 bp | TCCGTGGTTTGCGATTGGTTTTGTGTTTGCGGAGGGTaGAGGGTGGAGGGCTCGGGGCACCTTGGACTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: SVVCDWFCVCGG*RVEGSGHLGLS Trigger: CGAAAGTCCAAGGTGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAACCACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||
| CDS CCA 72 bp | TTTGCGATTGGTTTTGTGTTTGCGGAGGGTGCAGGGTaGAGGGCTCGGGGCACCTTGGACTTTCGAGCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: FAIGFVFAEGAG*RARGTLDFRAL Trigger: CAAGGCTCGAAAGTCCAAGGTGCCCCGAGCCCTCCACCCTGCACCCTCCGCAAACACAAAACCAATCGCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055353.9 |
||