RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MSX2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021469

Ensembl transcript IDs: ENSMUST00000021922.10

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGGGGAAGAGATGGACAGGAAGGTGAGACACCCAGGTGCTGACTaGCAACGCCATCTCCAGCAACTCAAGCACATGGCTTCTCCATCT +
Preference number: 1 (lower is better)
Translates to: LGEEMDRKVRHPGAD*QRHLQQLKHMASPS
Trigger: AGATGGAGAAGCCATGTGCTTGAGTTGCTGGAGATGGCGTTGTCAGTCAGCACCTGGGTGTCTCACCTTCCTGTCCATCTCTTCCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR TCA 90 bp TATACTGGGGGAAGAGATGGACAGGAAGGTGAGACACCCAGGTGCTaGCTGACAACGCCATCTCCAGCAACTCAAGCACATGGCTTCTCC +
Preference number: 1 (lower is better)
Translates to: YTGGRDGQEGETPRC*LTTPSPATQAHGFS
Trigger: GGAGAAGCCATGTGCTTGAGTTGCTGGAGATGGCGTTGTCAGTCAGCACCTGGGTGTCTCACCTTCCTGTCCATCTCTTCCCCCAGTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR GCA 90 bp ATTCAGGAGCAGAGTTGGCACCACCTTCTCGGAGAGGGAGGGGGATaGTTTTATGCAAACATCCATCCTGGAGTCTGGTCCATCTGGTCT +
Preference number: 1 (lower is better)
Translates to: IQEQSWHHLLGEGGG*FYANIHPGVWSIWS
Trigger: AGACCAGATGGACCAGACTCCAGGATGGATGTTTGCATAAAAGCATCCCCCTCCCTCTCCGAGAAGGTGGTGCCAACTCTGCTCCTGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR TCA 90 bp CACTCCAGGGACCTGACATGGAGTTTCCTATTTTCTACTTTACCCTaGGTAACTCTCAGAGTTATTCTCATCCTCTTTTCATCGATCTTA +
Preference number: 1 (lower is better)
Translates to: HSRDLTWSFLFSTLP*VTLRVILILFSSIL
Trigger: TAAGATCGATGAAAAGAGGATGAGAATAACTCTGAGAGTTACTCAGGGTAAAGTAGAAAATAGGAAACTCCATGTCAGGTCCCTGGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR CAA 90 bp CTGTCGCTTAGGGTGACAATGCAAGGCTCGCATTCAGGAGCAGAGTaGGCACCACCTTCTCGGAGAGGGAGGGGGATGCTTTTATGCAAA +
Preference number: 2 (lower is better)
Translates to: LSLRVTMQGSHSGAE*APPSRRGRGMLLCK
Trigger: TTTGCATAAAAGCATCCCCCTCCCTCTCCGAGAAGGTGGTGCCAACTCTGCTCCTGAATGCGAGCCTTGCATTGTCACCCTAAGCGACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR-3UTR GCA 90 bp ATACCCATTCAACGGGATAAAAATATACTGGGGGAAGAGATGGACAGGAAGGTGGGAGAGGGAGGGGGATaGTTTTATGCAAACATCCAT +
Preference number: 2 (lower is better)
Translates to: IPIQRDKNILGEEMDRKVGEGGG*FYANIH
Trigger: ATGGATGTTTGCATAAAAGCATCCCCCTCCCTCTCC...CACCTTCCTGTCCATCTCTTCCCCCAGTATATTTTTATCCCGTTGAATGGGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR-3UTR CCA 90 bp TATATAAATTTCCCTAAGAAGTTTAGCACACAAAGTACACACACACACACACACATTCAGGAGCAGAGTTaGCACCACCTTCTCGGAGAG +
Preference number: 2 (lower is better)
Translates to: YINFPKKFSTQSTHTHTHIQEQS*HHLLGE
Trigger: CTCTCCGAGAAGGTGGTGCCAACTCTGCTCCTGAAT...GTGTGTGTGTGTGTGTGTACTTTGTGTGCTAAACTTCTTAGGGAAATTTATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR-3UTR GCA 90 bp AAGACACTCATTTTTAAGAAGAGATTTACCATGTCCTCTTCCAATCACCTCTGTACCTCCCCCTTCACTTaGAAGAATCTGTCTGAAGTG +
Preference number: 2 (lower is better)
Translates to: KTLIFKKRFTMSSSNHLCTSPFT*KNLSEV
Trigger: CACTTCAGACAGATTCTTGCAAGTGAAGGGGGAGGT...ACAGAGGTGATTGGAAGAGGACATGGTAAATCTCTTCTTAAAAATGAGTGTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR-3UTR GCA 90 bp TATATAAATTTCCCTAAGAAGTTTAGCACACAAAGTACACACACACACACACACAGGGGGATGCTTTTATaGAAACATCCATCCTGGAGT +
Preference number: 2 (lower is better)
Translates to: YINFPKKFSTQSTHTHTHRGMLL*KHPSWS
Trigger: ACTCCAGGATGGATGTTTGCATAAAAGCATCCCCCT...GTGTGTGTGTGTGTGTGTACTTTGTGTGCTAAACTTCTTAGGGAAATTTATATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR TCA 72 bp GAGATGGACAGGAAGGTGAGACACCCAGGTGCTGACTaGCAACGCCATCTCCAGCAACTCAAGCACATGGCT +
Preference number: 3 (lower is better)
Translates to: EMDRKVRHPGAD*QRHLQQLKHMA
Trigger: AGCCATGTGCTTGAGTTGCTGGAGATGGCGTTGTCAGTCAGCACCTGGGTGTCTCACCTTCCTGTCCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR GCA 72 bp CAGAGTTGGCACCACCTTCTCGGAGAGGGAGGGGGATaGTTTTATGCAAACATCCATCCTGGAGTCTGGTCC +
Preference number: 3 (lower is better)
Translates to: QSWHHLLGEGGG*FYANIHPGVWS
Trigger: GGACCAGACTCCAGGATGGATGTTTGCATAAAAGCATCCCCCTCCCTCTCCGAGAAGGTGGTGCCAACTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR TCA 72 bp GGAAGAGATGGACAGGAAGGTGAGACACCCAGGTGCTaGCTGACAACGCCATCTCCAGCAACTCAAGCACAT +
Preference number: 3 (lower is better)
Translates to: GRDGQEGETPRC*LTTPSPATQAH
Trigger: ATGTGCTTGAGTTGCTGGAGATGGCGTTGTCAGTCAGCACCTGGGTGTCTCACCTTCCTGTCCATCTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR TCA 72 bp ATAAAAATATACTGGGGGAAGAGATGGACAGGAAGGTaGGACACCCAGGTGCTGACTGACAACGCCATCTCC +
Preference number: 3 (lower is better)
Translates to: IKIYWGKRWTGR*DTQVLTDNAIS
Trigger: GGAGATGGCGTTGTCAGTCAGCACCTGGGTGTCTCACCTTCCTGTCCATCTCTTCCCCCAGTATATTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR-3UTR CAA 90 bp AAGACACTCATTTTTAAGAAGAGATTTACCATGTCCTCTTCCAATCACCTCTGTCATTCAGGAGCAGAGTaGGCACCACCTTCTCGGAGA +
Preference number: 3 (lower is better)
Translates to: KTLIFKKRFTMSSSNHLCHSGAE*APPSRR
Trigger: TCTCCGAGAAGGTGGTGCCAACTCTGCTCCTGAATG...ACAGAGGTGATTGGAAGAGGACATGGTAAATCTCTTCTTAAAAATGAGTGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp CTTAGGGTGACAATGCAAGGCTCGCATTCAGGAGCAGAGTTGGCACCACCTTCTGCGGCGGGGAGTATCTaGCGGGCTCCTGTATCCACG +
Preference number: 4 (lower is better)
Translates to: LRVTMQGSHSGAELAPPSAAGSI*RAPVST
Trigger: CGTGGATACAGGAGCCCGGCAGATACTCCCCGCCGC...AGAAGGTGGTGCCAACTCTGCTCCTGAATGCGAGCCTTGCATTGTCACCCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp TCACCTTCTAACCCCCTCTCACTCCAGGGACCTGACATGGAGTTTCCTATTTTCTGCGTTCCTCTGCGCTaGCCTCGGCTCCTCCAGGCC +
Preference number: 4 (lower is better)
Translates to: SPSNPLSLQGPDMEFPIFCVPLR*PRLLQA
Trigger: GGCCTGGAGGAGCCGAGGGCAGCGCAGAGGAACGCA...GAAAATAGGAAACTCCATGTCAGGTCCCTGGAGTGAGAGGGGGTTAGAAGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
3UTR CAA 72 bp AGGGTGACAATGCAAGGCTCGCATTCAGGAGCAGAGTaGGCACCACCTTCTCGGAGAGGGAGGGGGATGCTT +
Preference number: 4 (lower is better)
Translates to: RVTMQGSHSGAE*APPSRRGRGML
Trigger: AAGCATCCCCCTCCCTCTCCGAGAAGGTGGTGCCAACTCTGCTCCTGAATGCGAGCCTTGCATTGTCACCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR CCA 90 bp TTCACTCTGTATCAAGTGGCCCTGTCGCTTAGGGTGACAATGCAAGGCTCGCATCCGCGGGCGATTCCTTaGGCGGCTTCTTGTCGGACA +
Preference number: 4 (lower is better)
Translates to: FTLYQVALSLRVTMQGSHPRAIP*AASCRT
Trigger: TGTCCGACAAGAAGCCGCCCAAGGAATCGCCCGCGG...ATGCGAGCCTTGCATTGTCACCCTAAGCGACAGGGCCACTTGATACAGAGTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp CCTTCTAACCCCCTCTCACTCCAGGGACCTGACATGGAGTTTCCTATTTTCTACTGTGTTTCCTCAGGGTaGAGGTGGTGGGGCTCATAT +
Preference number: 4 (lower is better)
Translates to: PSNPLSLQGPDMEFPIFYCVSSG*RWWGSY
Trigger: ATATGAGCCCCACCACCTGCACCCTGAGGAAACACA...GTAGAAAATAGGAAACTCCATGTCAGGTCCCTGGAGTGAGAGGGGGTTAGAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp TCACCTTCTAACCCCCTCTCACTCCAGGGACCTGACATGGAGTTTCCTATTTTCGTTTCTGGCGGAACTTaGGCTCCAAGGCTAGAAGCT +
Preference number: 4 (lower is better)
Translates to: SPSNPLSLQGPDMEFPIFVSGGT*APRLEA
Trigger: AGCTTCTAGCCTTGGAGCGCAAGTTCCGCCAGAAAC...GAAAATAGGAAACTCCATGTCAGGTCCCTGGAGTGAGAGGGGGTTAGAAGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR TCA 90 bp ATACCCATTCAACGGGATAAAAATATACTGGGGGAAGAGATGGACAGGAAGGTGTGCTGCTTGCAGGGGTaGGTTGATAGGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: IPIQRDKNILGEEMDRKVCCLQG*VDREGQ
Trigger: CTGCCCTTCCCTATCAACTCACCCCTGCAAGCAGCA...CACCTTCCTGTCCATCTCTTCCCCCAGTATATTTTTATCCCGTTGAATGGGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp TTCACTCTGTATCAAGTGGCCCTGTCGCTTAGGGTGACAATGCAAGGCTCGCATTATATGGATGCTGCTTaGAGGGGTGAGTTGATAGGG +
Preference number: 4 (lower is better)
Translates to: FTLYQVALSLRVTMQGSHYMDAA*RGELIG
Trigger: CCCTATCAACTCACCCCTGCAAGCAGCATCCATATA...ATGCGAGCCTTGCATTGTCACCCTAAGCGACAGGGCCACTTGATACAGAGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp ATATATTTATACATAAAAACTAGCAGAGCCAATATTTGTGAGAGGAAAGGGGGCGACCCTGCGTTCCTCTaGGCTGCCCTCGGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: IYLYIKTSRANICERKGGDPAFL*AALGSS
Trigger: GGAGGAGCCGAGGGCAGCGCAGAGGAACGCAGGGTC...GCCCCCTTTCCTCTCACAAATATTGGCTCTGCTAGTTTTTATGTATAAATATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp ATACCCATTCAACGGGATAAAAATATACTGGGGGAAGAGATGGACAGGAAGGTGGAACTCGGCCCGCTCTaGTATGGACAGGTACTGTTT +
Preference number: 4 (lower is better)
Translates to: IPIQRDKNILGEEMDRKVELGPL*YGQVLF
Trigger: AAACAGTACCTGTCCATAGCAGAGCGGGCCGAGTTC...CACCTTCCTGTCCATCTCTTCCCCCAGTATATTTTTATCCCGTTGAATGGGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR CCA 90 bp AAGACACTCATTTTTAAGAAGAGATTTACCATGTCCTCTTCCAATCACCTCTGTTGGGGCTCATATGTCTaGGCGGCGGGGAGTATCTGC +
Preference number: 4 (lower is better)
Translates to: KTLIFKKRFTMSSSNHLCWGSYV*AAGSIC
Trigger: GCAGATACTCCCCGCCGCCCAGACATATGAGCCCCA...ACAGAGGTGATTGGAAGAGGACATGGTAAATCTCTTCTTAAAAATGAGTGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR TCA 90 bp ATATATTTATACATAAAAACTAGCAGAGCCAATATTTGTGAGAGGAAAGGGGGCGAAGCTGGGATGTGGTaGAGGGTGTGCGTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: IYLYIKTSRANICERKGGEAGMW*RVCVAS
Trigger: GGAAGCCACGCACACCCTTCACCACATCCCAGCTTC...GCCCCCTTTCCTCTCACAAATATTGGCTCTGCTAGTTTTTATGTATAAATATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp ATATATTTATACATAAAAACTAGCAGAGCCAATATTTGTGAGAGGAAAGGGGGCTCCAGTTCCGCCTCTTaGAGTCTTTTCGCCTTAGCC +
Preference number: 4 (lower is better)
Translates to: IYLYIKTSRANICERKGGSSSAS*SLFALA
Trigger: GGCTAAGGCGAAAAGACTGCAAGAGGCGGAACTGGA...GCCCCCTTTCCTCTCACAAATATTGGCTCTGCTAGTTTTTATGTATAAATATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR GCA 90 bp ATAAGCAAGTCCACCATCCTTGCAAATTCTGCAATTAATCTCTTTCCCTTTAAGAGGATAGATGGTACATaGCATATCCAACCGGCGTGG +
Preference number: 4 (lower is better)
Translates to: ISKSTILANSAINLFPFKRIDGT*HIQPAW
Trigger: CCACGCCGGTTGGATATGGCATGTACCATCTATCCT...CTTAAAGGGAAAGAGATTAATTGCAGAATTTGCAAGGATGGTGGACTTGCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR CAA 90 bp TTGTGCACAGAAATGCAAATAAACACGTTACACCTCCCCCTTCACTTGCAAGAAACCGCGGGCGATTCCTaGGGCGGCTTCTTGTCGGAC +
Preference number: 5 (lower is better)
Translates to: LCTEMQINTLHLPLHLQETAGDS*GGFLSD
Trigger: GTCCGACAAGAAGCCGCCCAAGGAATCGCCCGCGGT...TTCTTGCAAGTGAAGGGGGAGGTGTAACGTGTTTATTTGCATTTCTGTGCACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS-3UTR CAA 90 bp TTGTGCACAGAAATGCAAATAAACACGTTACACCTCCCCCTTCACTTGCAAGAATGTTTCTGGCGGAACTaGCGCTCCAAGGCTAGAAGC +
Preference number: 5 (lower is better)
Translates to: LCTEMQINTLHLPLHLQECFWRN*RSKARS
Trigger: GCTTCTAGCCTTGGAGCGCAAGTTCCGCCAGAAACA...TTCTTGCAAGTGAAGGGGGAGGTGTAACGTGTTTATTTGCATTTCTGTGCACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10
CDS GCA 72 bp TGGTGGGGCTCATATGTCTGGGCGGCGGGGAGTATCTaGCGGGCTCCTGTATCCACGGTGCTCCGTCTTCGG +
Preference number: 6 (lower is better)
Translates to: WWGSYVWAAGSI*RAPVSTVLRLR
Trigger: CCGAAGACGGAGCACCGTGGATACAGGAGCCCGGCAGATACTCCCCGCCGCCCAGACATATGAGCCCCACCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021922.10