RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MSX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048450

Ensembl transcript IDs: ENSMUST00000063116.10

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTCCTGGGAAAGTCTCTTTAACCTACCTTGGTGAAGCACCAGCATaGGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCGCTTA +
Preference number: 1 (lower is better)
Translates to: GPGKVSLTYLGEAPA*ALPPQSNALLPKRL
Trigger: TAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACCAAGGTAGGTTAAAGAGACTTTCCCAGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR TCA 90 bp AATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGAAGCAGCTaGTGGAGTCTCATGGCCTCTAGTCCTTTTGGCCTCTGGTCTCCT +
Preference number: 1 (lower is better)
Translates to: NFSVQVLPGFRTGSS*WSLMASSPFGLWSP
Trigger: AGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCCATCAGCTGCTTCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR-3UTR TCA 90 bp GGTGAAGCACCAGCATGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGAGGACCGGAAGCAGCTaGTGGAGTCTCATGGCCTCT +
Preference number: 2 (lower is better)
Translates to: GEAPACALPPQSNALLPKRTGSS*WSLMAS
Trigger: AGAGGCCATGAGACTCCATCAGCTGCTTCCGGTCCT...CTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR-3UTR TCA 90 bp GGTGAAGCACCAGCATGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCCAGAAGGGGTCAGATaGGGAAGGTTTAGGAAGCGA +
Preference number: 2 (lower is better)
Translates to: GEAPACALPPQSNALLPKPEGVR*GRFRKR
Trigger: TCGCTTCCTAAACCTTCCTCATCTGACCCCTTCTGG...CTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR CAA 90 bp TCAGGACCGGAAGCAGCTGATGGAGTCTCATGGCCTCTAGTCCTTTaGGCCTCTGGTCTCCTTCAGCCTCTAATTCTGCTGGGGACCACG +
Preference number: 2 (lower is better)
Translates to: SGPEAADGVSWPLVL*ASGLLQPLILLGTT
Trigger: CGTGGTCCCCAGCAGAATTAGAGGCTGAAGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCCATCAGCTGCTTCCGGTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR-3UTR CCA 90 bp GAAGCACCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGAGCTCAAAGAGGTGGCTaGGGAGGGGATGGCACCACA +
Preference number: 2 (lower is better)
Translates to: EAPISNFSVQVLPGFRTGAQRGG*GGDGTT
Trigger: TGTGGTGCCATCCCCTCCCCAGCCACCTCTTTGAGC...TCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR-3UTR CCA 90 bp CTAGACACTTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATGAGGAAGGTCTCTGCTCAAAGAGGTaGCTGGGGAGGGGATGGCAC +
Preference number: 2 (lower is better)
Translates to: LDTSDHSFSSQKGSDEEGLCSKR*LGRGWH
Trigger: GTGCCATCCCCTCCCCAGCCACCTCTTTGAGCAGAG...ACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAAGTGTCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR-3UTR CCA 90 bp CGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTGCGCATGGCTGGGGAGGGGATaGCACCACAGGGAGGTGACT +
Preference number: 2 (lower is better)
Translates to: RINLLASAPLVSTFITCAWLGRG*HHREVT
Trigger: AGTCACCTCCCTGTGGTGCCATCCCCTCCCCAGCCA...TGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR GCA 72 bp TATAGGGCAGCAGAGCTTCCTAGGAAGGACTCCCGCTaGTCTGCTCAAAGAGGTGGCTGGGGAGGGGATGGC +
Preference number: 3 (lower is better)
Translates to: YRAAELPRKDSR*SAQRGGWGGDG
Trigger: GCCATCCCCTCCCCAGCCACCTCTTTGAGCAGAGCAGCGGGAGTCCTTCCTAGGAAGCTCTGCTGCCCTATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR TCA 72 bp GTGCAAGTCCTGCCTGGTTTCAGGACCGGAAGCAGCTaGTGGAGTCTCATGGCCTCTAGTCCTTTTGGCCTC +
Preference number: 3 (lower is better)
Translates to: VQVLPGFRTGSS*WSLMASSPFGL
Trigger: GAGGCCAAAAGGACTAGAGGCCATGAGACTCCATCAGCTGCTTCCGGTCCTGAAACCAGGCAGGACTTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR TCA 72 bp TTCTGGTCCTGGGAAAGTCTCTTTAACCTACCTTGGTaGAGCACCAGCATGCGCCCTGCCCCCTCAGAGCAA +
Preference number: 3 (lower is better)
Translates to: FWSWESLFNLPW*STSMRPAPSEQ
Trigger: TTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACCAAGGTAGGTTAAAGAGACTTTCCCAGGACCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR GCA 72 bp AAAGTCTCTTTAACCTACCTTGGTGAAGCACCAGCATaGGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCA +
Preference number: 3 (lower is better)
Translates to: KVSLTYLGEAPA*ALPPQSNALLP
Trigger: TGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACCAAGGTAGGTTAAAGAGACTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR GCA 72 bp GCTCATCTCTTGAAGCACCGATTAGCAATTTCTCTGTaGAAGTCCTGCCTGGTTTCAGGACCGGAAGCAGCT +
Preference number: 3 (lower is better)
Translates to: AHLLKHRLAISL*KSCLVSGPEAA
Trigger: AGCTGCTTCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTCAAGAGATGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR TCA 72 bp TTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATaGGGAAGGTTTAGGAAGCGACAACCAGGAGGAAGT +
Preference number: 3 (lower is better)
Translates to: FRPFFFFPEGVR*GRFRKRQPGGS
Trigger: ACTTCCTCCTGGTTGTCGCTTCCTAAACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR GCA 72 bp ATTCTGCTGGGGACCACGGATAAATCTCTTGGCCTCTaGACCCTTAGTTTCCACATTTATAACTTGCGCATG +
Preference number: 3 (lower is better)
Translates to: ILLGTTDKSLGL*TLSFHIYNLRM
Trigger: CATGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCGTGGTCCCCAGCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR GCA 72 bp TTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTaGGCATGTAAATCTAGATTTTTCTCGAAAAACCTA +
Preference number: 3 (lower is better)
Translates to: LASAPLVSTFIT*ACKSRFFSKNL
Trigger: TAGGTTTTTCGAGAAAAATCTAGATTTACATGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp TGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCGCTTAGAGTTTGACGAGCCACCCGCTGCCTaGGCCCCTTCGGAGGCCACC +
Preference number: 4 (lower is better)
Translates to: CALPPQSNALLPKRLEFDEPPAA*APSEAT
Trigger: GGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTC...GTCAAACTCTAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR GCA 90 bp GGTGAAGCACCAGCATGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGAAGGCGTCCTGGGCTTaGGGTTGGTCTTGTGCTTGC +
Preference number: 4 (lower is better)
Translates to: GEAPACALPPQSNALLPKKASWA*GWSCAC
Trigger: GCAAGCACAAGACCAACCGCAAGCCCAGGACGCCTT...CTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp GAAGCACCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGAGGCAGCGCGGCGCGCTaGAAAGGGCCAGAGGCACTG +
Preference number: 4 (lower is better)
Translates to: EAPISNFSVQVLPGFRTGGSAAR*KGPEAL
Trigger: CAGTGCCTCTGGCCCTTTCCAGCGCGCCGCGCTGCC...TCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp CCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGAAGCAGCCGGGCACTTTGGGCTTaGCCCCCTCCTCATCTGTGC +
Preference number: 4 (lower is better)
Translates to: PISNFSVQVLPGFRTGSSRALWA*PPPHLC
Trigger: GCACAGATGAGGAGGGGGCCAAGCCCAAAGTGCCCG...GCTGCTTCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp GAAGCACCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGACCTCCGACTGAGAAATaGCCGAGAGGCCGCGGCGAG +
Preference number: 4 (lower is better)
Translates to: EAPISNFSVQVLPGFRTGPPTEK*PRGRGE
Trigger: CTCGCCGCGGCCTCTCGGCCATTTCTCAGTCGGAGG...TCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR CAA 72 bp GCACCAGCATGCGCCCTGCCCCCTCAGAGCAATGCTTaGCTGCCAAAGCGCTTAGAGTTTGACAGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: APACALPPQSNA*LPKRLEFDSGR
Trigger: CCTTCCACTGTCAAACTCTAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp GGAGTCTCATGGCCTCTAGTCCTTTTGGCCTCTGGTCTCCTTCAGCCTCTAATTGAGGAGTCCTCCGACTaGGAAATGGCCGAGAGGCCG +
Preference number: 4 (lower is better)
Translates to: GVSWPLVLLASGLLQPLIEESSD*EMAERP
Trigger: CGGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTC...AATTAGAGGCTGAAGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp GGAGTCTCATGGCCTCTAGTCCTTTTGGCCTCTGGTCTCCTTCAGCCTCTAATTGCAGCTGAGCTGTGGTaGAAGGCGTCCTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: GVSWPLVLLASGLLQPLIAAELW*KASWAC
Trigger: GCAAGCCCAGGACGCCTTTCACCACAGCTCAGCTGC...AATTAGAGGCTGAAGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp GGAGTCTCATGGCCTCTAGTCCTTTTGGCCTCTGGTCTCCTTCAGCCTCTAATTCCAGGACGCTCTCCTTaGCCCCGGGCTTCCTGTGAT +
Preference number: 4 (lower is better)
Translates to: GVSWPLVLLASGLLQPLIPGRSP*PRASCD
Trigger: ATCACAGGAAGCCCGGGGCCAAGGAGAGCGTCCTGG...AATTAGAGGCTGAAGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp CGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTGCGCAGCCCCGGGCTTCCTGTaGTCGGCCATGAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: RINLLASAPLVSTFITCAAPGFL*SAMRAS
Trigger: GGAGGCCCTCATGGCCGATCACAGGAAGCCCGGGGC...TGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR GCA 90 bp TGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCGCTTAGAGTTTGACAAGTCAGGTGGTACATaGTGTAGCCTACATGGGCGG +
Preference number: 4 (lower is better)
Translates to: CALPPQSNALLPKRLEFDKSGGT*CSLHGR
Trigger: CCGCCCATGTAGGCTACAGCATGTACCACCTGACTT...GTCAAACTCTAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp CTAGACACTTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATGAGGAAGGTCTCCCCCAGCAGGCTTaGCGAAGGCGGAGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LDTSDHSFSSQKGSDEEGLPQQA*RRRSPP
Trigger: TGGAGGACTCCGCCTTCGCCAAGCCTGCTGGGGGAG...ACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAAGTGTCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp GAAGCACCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGACAGCAGGCGGCAACATaGGTTTCGCGGCCATCTTCA +
Preference number: 4 (lower is better)
Translates to: EAPISNFSVQVLPGFRTGQQAAT*VSRPSS
Trigger: TGAAGATGGCCGCGAAACCCATGTTGCCGCCTGCTG...TCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp CTAGACACTTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATGAGGAAGGTGCTGAAGGGCAGGAGTaGAGCGGGCACTTTGGGCTT +
Preference number: 4 (lower is better)
Translates to: LDTSDHSFSSQKGSDEEGAEGQE*SGHFGL
Trigger: AAGCCCAAAGTGCCCGCTTCACTCCTGCCCTTCAGC...ACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAAGTGTCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR GCA 90 bp CTAGACACTTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATGAGGAAGGTGAGAAGCGGGGACTCTaGATCCACGGGGTCCGATCT +
Preference number: 4 (lower is better)
Translates to: LDTSDHSFSSQKGSDEEGEKRGL*IHGVRS
Trigger: AGATCGGACCCCGTGGATGCAGAGTCCCCGCTTCTC...ACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAAGTGTCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
3UTR CAA 72 bp GAAGCAGCTGATGGAGTCTCATGGCCTCTAGTCCTTTaGGCCTCTGGTCTCCTTCAGCCTCTAATTCTGCTG +
Preference number: 4 (lower is better)
Translates to: EAADGVSWPLVL*ASGLLQPLILL
Trigger: CAGCAGAATTAGAGGCTGAAGGAGACCAGAGGCCAAAAGGACTAGAGGCCATGAGACTCCATCAGCTGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp CTGGGGACCACGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATCGGAGTCCTCCACTTTaGCACCGAGTGGCAAAGAAG +
Preference number: 4 (lower is better)
Translates to: LGTTDKSLGLCTLSFHIYRSPPL*HRVAKK
Trigger: CTTCTTTGCCACTCGGTGTCAAAGTGGAGGACTCCG...ATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCGTGGTCCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR TCA 90 bp CTAGACACTTCCGACCATTCTTTTTCTTCCCAGAAGGGGTCAGATGAGGAAGGTCATCTTCTGGCAGCTTaGGGAGTCCTCCGACTGAGA +
Preference number: 4 (lower is better)
Translates to: LDTSDHSFSSQKGSDEEGHLLAA*GVLRLR
Trigger: TCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATG...ACCTTCCTCATCTGACCCCTTCTGGGAAGAAAAAGAATGGTCGGAAGTGTCTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp CGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTGCGCATCCTGGGCTTGCGGTTaGTCTTGTGCTTGCGTAGGG +
Preference number: 4 (lower is better)
Translates to: RINLLASAPLVSTFITCASWACG*SCACVG
Trigger: CCCTACGCAAGCACAAGACCAACCGCAAGCCCAGGA...TGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CCA 90 bp CGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTGCGCACACTTTGACACCGAGTaGCAAAGAAGTCATAGCAGC +
Preference number: 4 (lower is better)
Translates to: RINLLASAPLVSTFITCAHFDTE*QRSHSS
Trigger: GCTGCTATGACTTCTTTGCCACTCGGTGTCAAAGTG...TGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS TCA 90 bp GACCCGGGCCGGGTGCCCAAGTGCTGCACCGAGCCACCCGCTGCCTaGGCCCCTTCGGAGGCCACCAGGACGCTCTCCTTGGCCCCGGGC +
Preference number: 5 (lower is better)
Translates to: DPGRVPKCCTEPPAA*APSEATRTLSLAPG
Trigger: GCCCGGGGCCAAGGAGAGCGTCCTGGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTCGGTGCAGCACTTGGGCACCCGGCCCGGGTC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS GCA 90 bp CAGAGACCCGGGCCGGGTGCCCAAGTGCTGCACCGAGCCACCCGCTaGCTGAGCCCCTTCGGAGGCCACCAGGACGCTCTCCTTGGCCCC +
Preference number: 5 (lower is better)
Translates to: QRPGPGAQVLHRATR*LSPFGGHQDALLGP
Trigger: GGGGCCAAGGAGAGCGTCCTGGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTCGGTGCAGCACTTGGGCACCCGGCCCGGGTCTCTG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp GGTGAAGCACCAGCATGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGGCGGGCACTTTGGGCTaGGCCCCCTCCTCATCTGTG +
Preference number: 5 (lower is better)
Translates to: GEAPACALPPQSNALLPKAGTLG*APSSSV
Trigger: CACAGATGAGGAGGGGGCCAAGCCCAAAGTGCCCGC...CTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCATGCTGGTGCTTCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS TCA 90 bp GTTTCTCGGGGCTTTCGGCCTTCACCAGAGCATCTTCTGGCAGCTTaGGGAGTCCTCCGACTGAGAAATGGCCGAGAGGCCGCGGCGAGG +
Preference number: 5 (lower is better)
Translates to: VSRGFRPSPEHLLAA*GVLRLRNGREAAAR
Trigger: CCTCGCCGCGGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTGGTGAAGGCCGAAAGCCCCGAGAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CCA 90 bp GACCGCCAAGAGGAAAAGAGAGGCCGAAGGCAGCAGGCGGCAACATaGGTTTCGCGGCCATCTTCAGCTTCTCCAGCTCCGCCTCCTGCA +
Preference number: 5 (lower is better)
Translates to: DRQEEKRGRRQQAAT*VSRPSSASPAPPPA
Trigger: TGCAGGAGGCGGAGCTGGAGAAGCTGAAGATGGCCGCGAAACCCATGTTGCCGCCTGCTGCCTTCGGCCTCTCTTTTCCTCTTGGCGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp GAAGCACCGATTAGCAATTTCTCTGTGCAAGTCCTGCCTGGTTTCAGGACCGGACCTCCCCCAGCAGGCTaGGCGAAGGCGGAGTCCTCC +
Preference number: 5 (lower is better)
Translates to: EAPISNFSVQVLPGFRTGPPPAG*AKAESS
Trigger: GGAGGACTCCGCCTTCGCCAAGCCTGCTGGGGGAGG...TCCGGTCCTGAAACCAGGCAGGACTTGCACAGAGAAATTGCTAATCGGTGCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp TGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCGCTTAGAGTTTGACAGTGAAGCGGGCACTTaGGGCTTGGCCCCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: CALPPQSNALLPKRLEFDSEAGT*GLAPSS
Trigger: TGAGGAGGGGGCCAAGCCCAAAGTGCCCGCTTCACT...GTCAAACTCTAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp TGCGCCCTGCCCCCTCAGAGCAATGCTTTGCTGCCAAAGCGCTTAGAGTTTGACTGCTTCTGGCGGAACTaGCGCTCCAGAGCCAGCAGC +
Preference number: 5 (lower is better)
Translates to: CALPPQSNALLPKRLEFDCFWRN*RSRASS
Trigger: GCTGCTGGCTCTGGAGCGCAAGTTCCGCCAGAAGCA...GTCAAACTCTAAGCGCTTTGGCAGCAAAGCATTGCTCTGAGGGGGCAGGGCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp CTGGGGACCACGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATCTGTGCCCATGGCGGTaGCGGTGGCCGCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: LGTTDKSLGLCTLSFHIYLCPWR*RWPQQP
Trigger: GGGCTGCTGCGGCCACCGCAACCGCCATGGGCACAG...ATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCGTGGTCCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp CTGGGGACCACGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATGCGGAGTCCTCCACTTaGACACCGAGTGGCAAAGAA +
Preference number: 5 (lower is better)
Translates to: LGTTDKSLGLCTLSFHIYAESST*TPSGKE
Trigger: TTCTTTGCCACTCGGTGTCAAAGTGGAGGACTCCGC...ATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCGTGGTCCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS-3UTR CAA 90 bp CGGATAAATCTCTTGGCCTCTGCACCCTTAGTTTCCACATTTATAACTTGCGCAGCATCTTCTGGCAGCTaGAGGAGTCCTCCGACTGAG +
Preference number: 5 (lower is better)
Translates to: RINLLASAPLVSTFITCAASSGS*RSPPTE
Trigger: CTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGC...TGCGCAAGTTATAAATGTGGAAACTAAGGGTGCAGAGGCCAAGAGATTTATCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS GCA 72 bp AGGGCGCATCCGGGGCGCCCAGAGACCCGGGCCGGGTaGCCAAGTGCTGCACCGAGCCACCCGCTGCCTGAG +
Preference number: 6 (lower is better)
Translates to: RAHPGRPETRAG*PSAAPSHPLPE
Trigger: CTCAGGCAGCGGGTGGCTCGGTGCAGCACTTGGGCACCCGGCCCGGGTCTCTGGGCGCCCCGGATGCGCCCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS GCA 72 bp GGGCCGGGTGCCCAAGTGCTGCACCGAGCCACCCGCTaGCTGAGCCCCTTCGGAGGCCACCAGGACGCTCTC +
Preference number: 6 (lower is better)
Translates to: GPGAQVLHRATR*LSPFGGHQDAL
Trigger: GAGAGCGTCCTGGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTCGGTGCAGCACTTGGGCACCCGGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS TCA 72 bp CGGGTGCCCAAGTGCTGCACCGAGCCACCCGCTGCCTaGGCCCCTTCGGAGGCCACCAGGACGCTCTCCTTG +
Preference number: 6 (lower is better)
Translates to: RVPKCCTEPPAA*APSEATRTLSL
Trigger: CAAGGAGAGCGTCCTGGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTCGGTGCAGCACTTGGGCACCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS GCA 72 bp AAGCGGGCACTTTGGGCTTGGCCCCCTCCTCATCTGTaGCCATGGCGGTTGCGGTGGCCGCAGCAGCCCCGG +
Preference number: 6 (lower is better)
Translates to: KRALWAWPPPHL*PWRLRWPQQPR
Trigger: CCGGGGCTGCTGCGGCCACCGCAACCGCCATGGGCACAGATGAGGAGGGGGCCAAGCCCAAAGTGCCCGCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CAA 90 bp AGGGCCTCCACGCTGAAGGGCAGGAGTGAAGCGGGCACTTTGGGCTaGGCCCCCTCCTCATCTGTGCCCATGGCGGTTGCGGTGGCCGCA +
Preference number: 6 (lower is better)
Translates to: RASTLKGRSEAGTLG*APSSSVPMAVAVAA
Trigger: TGCGGCCACCGCAACCGCCATGGGCACAGATGAGGAGGGGGCCAAGCCCAAAGTGCCCGCTTCACTCCTGCCCTTCAGCGTGGAGGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS GCA 72 bp TCCTGGGCTTGCGGTTGGTCTTGTGCTTGCGTAGGGTaGATGCTGGGGGACTCAGCCGTCTGGCTGGGGGCG +
Preference number: 6 (lower is better)
Translates to: SWACGWSCACVG*MLGDSAVWLGA
Trigger: CGCCCCCAGCCAGACGGCTGAGTCCCCCAGCATGCACCCTACGCAAGCACAAGACCAACCGCAAGCCCAGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CCA 72 bp TCTTCTGGCAGCTTGAGGAGTCCTCCGACTGAGAAATaGCCGAGAGGCCGCGGCGAGGAGGGCGCATCCGGG +
Preference number: 6 (lower is better)
Translates to: SSGSLRSPPTEK*PRGRGEEGASG
Trigger: CCCGGATGCGCCCTCCTCGCCGCGGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS TCA 72 bp CAGAGCATCTTCTGGCAGCTTGAGGAGTCCTCCGACTaGGAAATGGCCGAGAGGCCGCGGCGAGGAGGGCGC +
Preference number: 6 (lower is better)
Translates to: QSIFWQLEESSD*EMAERPRRGGR
Trigger: GCGCCCTCCTCGCCGCGGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CAA 72 bp ACGCTGAAGGGCAGGAGTGAAGCGGGCACTTTGGGCTaGGCCCCCTCCTCATCTGTGCCCATGGCGGTTGCG +
Preference number: 6 (lower is better)
Translates to: TLKGRSEAGTLG*APSSSVPMAVA
Trigger: CGCAACCGCCATGGGCACAGATGAGGAGGGGGCCAAGCCCAAAGTGCCCGCTTCACTCCTGCCCTTCAGCGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CAA 72 bp GTGAAAGGCGTCCTGGGCTTGCGGTTGGTCTTGTGCTaGCGTAGGGTGCATGCTGGGGGACTCAGCCGTCTG +
Preference number: 6 (lower is better)
Translates to: VKGVLGLRLVLC*RRVHAGGLSRL
Trigger: CAGACGGCTGAGTCCCCCAGCATGCACCCTACGCAAGCACAAGACCAACCGCAAGCCCAGGACGCCTTTCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CAA 90 bp AGTTTCTCGGGGCTTTCGGCCTTCACCAGAGCATCTTCTGGCAGCTaGAGGAGTCCTCCGACTGAGAAATGGCCGAGAGGCCGCGGCGAG +
Preference number: 6 (lower is better)
Translates to: SFSGLSAFTRASSGS*RSPPTEKWPRGRGE
Trigger: CTCGCCGCGGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTGGTGAAGGCCGAAAGCCCCGAGAAACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CCA 72 bp GAGGAAAAGAGAGGCCGAAGGCAGCAGGCGGCAACATaGGTTTCGCGGCCATCTTCAGCTTCTCCAGCTCCG +
Preference number: 6 (lower is better)
Translates to: EEKRGRRQQAAT*VSRPSSASPAP
Trigger: CGGAGCTGGAGAAGCTGAAGATGGCCGCGAAACCCATGTTGCCGCCTGCTGCCTTCGGCCTCTCTTTTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS TCA 72 bp GGCTTTCGGCCTTCACCAGAGCATCTTCTGGCAGCTTaGGGAGTCCTCCGACTGAGAAATGGCCGAGAGGCC +
Preference number: 6 (lower is better)
Translates to: GFRPSPEHLLAA*GVLRLRNGREA
Trigger: GGCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTGGTGAAGGCCGAAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10
CDS CAA 72 bp GGGCTTTCGGCCTTCACCAGAGCATCTTCTGGCAGCTaGAGGAGTCCTCCGACTGAGAAATGGCCGAGAGGC +
Preference number: 6 (lower is better)
Translates to: GLSAFTRASSGS*RSPPTEKWPRG
Trigger: GCCTCTCGGCCATTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTGGTGAAGGCCGAAAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063116.10