Pregenerated sensors for MST1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032591Ensembl transcript IDs: ENSMUST00000035211.14, ENSMUST00000160184.2, ENSMUST00000162886.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTGACACTCCCGCCCTaGCTCTGTAACGTCTACCTCGCCACGGTAATCCTCACCGTTGCA | + |
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Preference number: 1 (lower is better) Translates to: VRVGVLQVPALTLPP*LCNVYLATVILTVA Trigger: TGCAACGGTGAGGATTACCGTGGCGAGGTAGACGTTACAGAGTCAGGGCGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR-3UTR CCA 90 bp | GAACTTTTCAGGCTGGAAAGGGTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTGGGCCACCAGCTGTCCTaGCCACAGTGCCCCGGTAGC | + |
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Preference number: 2 (lower is better) Translates to: ELFRLERVRVGVLQVPALGHQLS*PQCPGS Trigger: GCTACCGGGGCACTGTGGCCAGGACAGCTGGTGGCC...CAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAAGTTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR-3UTR CCA 90 bp | GGAACTTTTCAGGCTGGAAAGGGTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTCTGCGACTCCAGGCTTaGCAGGGCAGGCCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: GTFQAGKGASGGAAGPSVLRLQA*QGRPPA Trigger: AGCTGGTGGCCTGCCCTGCCAAGCCTGGAGTCGCAG...AACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAAGTTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR-3UTR GCA 90 bp | GAACTTTTCAGGCTGGAAAGGGTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTGTCTGGAAACGCACACTaGGGTTTGTTGTGTAGCACC | + |
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Preference number: 2 (lower is better) Translates to: ELFRLERVRVGVLQVPALSGNAH*GLLCST Trigger: GGTGCTACACAACAAACCGCAGTGTGCGTTTCCAGA...CAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAAGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR TCA 72 bp | GGGGTGCTGCAGGTCCCAGCGTTGACACTCCCGCCCTaGCTCTGTAACGTCTACCTCGCCACGGTAATCCTC | + |
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Preference number: 3 (lower is better) Translates to: GVLQVPALTLPP*LCNVYLATVIL Trigger: GAGGATTACCGTGGCGAGGTAGACGTTACAGAGTCAGGGCGGGAGTGTCAACGCTGGGACCTGCAGCACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR CCA 72 bp | GGCCATTCTTTGGCGTGGGCGTATACTTGTGGTCATTaGGGAACCTGCGACTCCAGGCTTGGCAGGGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: GHSLAWAYTCGH*GTCDSRLGRAG Trigger: GCCTGCCCTGCCAAGCCTGGAGTCGCAGGTTCCCCAATGACCACAAGTATACGCCCACGCCAAAGAATGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| 3UTR CCA 72 bp | TCTTCCAGGCCATTCTTTGGCGTGGGCGTATACTTGTaGTCATTGGGGAACCTGCGACTCCAGGCTTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SSRPFFGVGVYL*SLGNLRLQAWQ Trigger: CTGCCAAGCCTGGAGTCGCAGGTTCCCCAATGACCACAAGTATACGCCCACGCCAAAGAATGGCCTGGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| CDS CCA 90 bp | GTTGGCCTCCAGTCCCGCCTGCGGTGCCGAGGTGGGTGTAAATTGTaGCTTGTGCGGTGTCTCAGAGGACCAGTGCTGGCACTGAACGCC | + |
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Preference number: 5 (lower is better) Translates to: VGLQSRLRCRGGCKL*LVRCLRGPVLALNA Trigger: GGCGTTCAGTGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACAATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS GCA 90 bp | CCCATCAGGATTCCTGCAGAAGTTGGCCTCCAGTCCCGCCTGCGGTaGCGAGGTGGGTGTAAATTGTGGCTTGTGCGGTGTCTCAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: PIRIPAEVGLQSRLR*RGGCKLWLVRCLRG Trigger: TCCTCTGAGACACCGCACAAGCCACAATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS-3UTR CAA 90 bp | AGGCTGGAAAGGGTGCGAGTGGGGGTGCTGCAGGTCCCAGCGTTGACACTCCCGGAACAGCAAGAGCCCTaGAACACTGTACCAGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: RLERVRVGVLQVPALTLPEQQEP*NTVPEA Trigger: TGCTTCTGGTACAGTGTTCAAGGGCTCTTGCTGTTC...CGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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| CDS TCA 90 bp | TTTTCCGCGGAAGCAGTTAAGAGCCTTGCCCTTGTTGCGCCGCTGTaGCTTGGATCCGCAACTGGGCAGGTCGCAGAATTCTCGCTCAAC | + |
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Preference number: 5 (lower is better) Translates to: FSAEAVKSLALVAPL*LGSATGQVAEFSLN Trigger: GTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162886.2 |
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| CDS CCA 90 bp | ATTCCGGCAGAAATTCTCACGAAGGTCCTTGCAAGCATATTTCTCTaGCACAAAGCGGTGCTGGTGTGGACTCTGCGCATCCCACCGCTG | + |
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Preference number: 5 (lower is better) Translates to: IPAEILTKVLASIFL*HKAVLVWTLRIPPL Trigger: CAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATATGCTTGCAAGGACCTTCGTGAGAATTTCTGCCGGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS GCA 72 bp | TATTTCTCTGGCACAAAGCGGTGCTGGTGTGGACTCTaGGCATCCCACCGCTGGCAGGGCACGCCCGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: YFSGTKRCWCGL*ASHRWQGTPAE Trigger: CTCTGCGGGCGTGCCCTGCCAGCGGTGGGATGCGCAGAGTCCACACCAGCACCGCTTTGTGCCAGAGAAATA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS CAA 90 bp | CCGCGGAAGCAGTTAAGAGCCTTGCCCTTGTTGCGCCGCTGTGACTaGGATCCTTTGACGGTCGGAGGCAGGTTAGGCCCGCAACTGGGC | + |
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Preference number: 6 (lower is better) Translates to: PRKQLRALPLLRRCD*DPLTVGGRLGPQLG Trigger: GCCCAGTTGCGGGCCTAACCTGCCTCCGACCGTCAAAGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035211.14 |
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| CDS CCA 72 bp | CAGTCCCGCCTGCGGTGCCGAGGTGGGTGTAAATTGTaGCTTGTGCGGTGTCTCAGAGGACCAGTGCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: QSRLRCRGGCKL*LVRCLRGPVLA Trigger: TGCCAGCACTGGTCCTCTGAGACACCGCACAAGCCACAATTTACACCCACCTCGGCACCGCAGGCGGGACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS GCA 72 bp | AGCCGTGGTAGCATCCCTCTGGCACCAGTTCTTCAGTaGAGCGTGGGATCTGGTGGCAGAAGGCCATGCGCA | + |
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Preference number: 6 (lower is better) Translates to: SRGSIPLAPVLQ*SVGSGGRRPCA Trigger: TGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGGGATGCTACCACGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS GCA 72 bp | ATTCCTGCAGAAGTTGGCCTCCAGTCCCGCCTGCGGTaGCGAGGTGGGTGTAAATTGTGGCTTGTGCGGTGT | + |
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Preference number: 6 (lower is better) Translates to: IPAEVGLQSRLR*RGGCKLWLVRC Trigger: ACACCGCACAAGCCACAATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS GCA 72 bp | TCAGGATTCCTGCAGAAGTTGGCCTCCAGTCCCGCCTaGGGTGCCGAGGTGGGTGTAAATTGTGGCTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SGFLQKLASSPA*GAEVGVNCGLC Trigger: GCACAAGCCACAATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS CCA 72 bp | GTAGCATCCCTCTGGCACCAGTTCTTCAGTGCAGCGTaGGATCTGGTGGCAGAAGGCCATGCGCAAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: VASLWHQFFSAA*DLVAEGHAQTR Trigger: CCTGGTTTGCGCATGGCCTTCTGCCACCAGATCCCACGCTGCACTGAAGAACTGGTGCCAGAGGGATGCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035211.14 ENSMUST00000162886.2 |
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| CDS CAA 90 bp | CCGCGGAAGCAGTTAAGAGCCTTGCCCTTGTTGCGCCGCTGTGACTaGGATCCGCAACTGGGCAGGTCGCAGAATTCTCGCTCAACATTC | + |
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Preference number: 6 (lower is better) Translates to: PRKQLRALPLLRRCD*DPQLGRSQNSRSTF Trigger: GAATGTTGAGCGAGAATTCTGCGACCTGCCCAGTTGCGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTGCTTCCGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162886.2 |
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| CDS CAA 72 bp | CAGTTAAGAGCCTTGCCCTTGTTGCGCCGCTGTGACTaGGATCCGCAACTGGGCAGGTCGCAGAATTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: QLRALPLLRRCD*DPQLGRSQNSR Trigger: GCGAGAATTCTGCGACCTGCCCAGTTGCGGATCCAAGTCACAGCGGCGCAACAAGGGCAAGGCTCTTAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162886.2 |
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| CDS TCA 72 bp | TTCCTTAACTCTGTGCCCCGGAACAGCAAGAGCCCTTaGACACTGTACCAGAAGCAGCAGAAGTGGGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: FLNSVPRNSKSP*TLYQKQQKWEP Trigger: TGGCTCCCACTTCTGCTGCTTCTGGTACAGTGTTCAAGGGCTCTTGCTGTTCCGGGGCACAGAGTTAAGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160184.2 |
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