Pregenerated sensors for MSRB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023094Ensembl transcript IDs: ENSMUST00000023856.9
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGTCAGTCCACGAACCTGTGGAAATCCTGCCTAGGTCCCACCCTGTaGTCTCACCCGAAGCCTTGGCAGCCAATTGAAATCCCATGGCCC | + |
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Preference number: 1 (lower is better) Translates to: RQSTNLWKSCLGPTL*SHPKPWQPIEIPWP Trigger: GGGCCATGGGATTTCAATTGGCTGCCAAGGCTTCGGGTGAGACCACAGGGTGGGACCTAGGCAGGATTTCCACAGGTTCGTGGACTGACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CCA 90 bp | GTATGTGTGTCCCATGCTCGGCTACTTTGTCCTCCTCTTCAACACTaGGATCTCTCATCTCTCATCTGTTCCAGCCCATCTCTTTTCTCT | + |
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Preference number: 1 (lower is better) Translates to: VCVSHARLLCPPLQH*DLSSLICSSPSLFS Trigger: AGAGAAAAGAGATGGGCTGGAACAGATGAGAGATGAGAGATCCCAGTGTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CCA 90 bp | ACATGGATCCCAGCTGTGTGTTGTAAGGCTGAGTCAGTGGAGTTTTaGATAAGAAGCCACAAGTTTCATCCATTATATCATCATGGGTAT | + |
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Preference number: 1 (lower is better) Translates to: TWIPAVCCKAESVEF*IRSHKFHPLYHHGY Trigger: ATACCCATGATGATATAATGGATGAAACTTGTGGCTTCTTATCCAAAACTCCACTGACTCAGCCTTACAACACACAGCTGGGATCCATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR-3UTR TCA 90 bp | GTTCCCTTCAGAGGCTTTAGGGACCCTCGTCAGTCCACGAACCTGTGGAAATCCGCCTTGGCAGCCAATTaGAATCCCATGGCCCAAGCG | + |
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Preference number: 2 (lower is better) Translates to: VPFRGFRDPRQSTNLWKSALAAN*NPMAQA Trigger: CGCTTGGGCCATGGGATTTCAATTGGCTGCCAAGGC...GGATTTCCACAGGTTCGTGGACTGACGAGGGTCCCTAAAGCCTCTGAAGGGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR-3UTR CAA 90 bp | CTCAATTCACATGGATCCCAGCTGTGTGTTGTAAGGCTGAGTCAGTGGAGTTTTAGCCTTGGCAGCCAATaGAAATCCCATGGCCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: LNSHGSQLCVVRLSQWSFSLGSQ*KSHGPS Trigger: GCTTGGGCCATGGGATTTCAATTGGCTGCCAAGGCT...AAAACTCCACTGACTCAGCCTTACAACACACAGCTGGGATCCATGTGAATTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CCA 72 bp | GATAAGAAGCCACAAGTTTCATCCATTATATCATCATaGGTATGTGTGTCCCATGCTCGGCTACTTTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: DKKPQVSSIISS*VCVSHARLLCP Trigger: AGGACAAAGTAGCCGAGCATGGGACACACATACCCATGATGATATAATGGATGAAACTTGTGGCTTCTTATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CCA 72 bp | CCAGCTGTGTGTTGTAAGGCTGAGTCAGTGGAGTTTTaGATAAGAAGCCACAAGTTTCATCCATTATATCAT | + |
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Preference number: 3 (lower is better) Translates to: PAVCCKAESVEF*IRSHKFHPLYH Trigger: ATGATATAATGGATGAAACTTGTGGCTTCTTATCCAAAACTCCACTGACTCAGCCTTACAACACACAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CAA 72 bp | CCACCCTGTGGTCTCACCCGAAGCCTTGGCAGCCAATaGAAATCCCATGGCCCAAGCGGAAGTCAGGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: PPCGLTRSLGSQ*KSHGPSGSQVE Trigger: CTCAACCTGACTTCCGCTTGGGCCATGGGATTTCAATTGGCTGCCAAGGCTTCGGGTGAGACCACAGGGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR GCA 90 bp | CTGTGGTCTCACCCGAAGCCTTGGCAGCCAATTGAAATCCCATGGCCCAAGCGGTGCAGACCACCTCCATaGGAGGACATCCTAAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LWSHPKPWQPIEIPWPKRCRPPP*EDILRK Trigger: CTTCCTTAGGATGTCCTCGCATGGAGGTGGTCTGCA...CCGCTTGGGCCATGGGATTTCAATTGGCTGCCAAGGCTTCGGGTGAGACCACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CCA 90 bp | GGGCAACTCAGGTTCCCTTCAGAGGCTTTAGGGACCCTCGTCAGTCCACGAACCTTTGGCCAGTGGGCTTaGGTCCATCAGGAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: GQLRFPSEALGTLVSPRTFGQWA*VHQETH Trigger: ATGTGTTTCCTGATGGACCCAAGCCCACTGGCCAAA...GGTTCGTGGACTGACGAGGGTCCCTAAAGCCTCTGAAGGGAACCTGAGTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR TCA 90 bp | GTTCCCTTCAGAGGCTTTAGGGACCCTCGTCAGTCCACGAACCTGTGGAAATCCTCAGGGCCACACTGTTaGTGCAAAACCTTTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: VPFRGFRDPRQSTNLWKSSGPHC*CKTFGQ Trigger: CTGGCCAAAGGTTTTGCATCAACAGTGTGGCCCTGA...GGATTTCCACAGGTTCGTGGACTGACGAGGGTCCCTAAAGCCTCTGAAGGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CCA 90 bp | TGTGGTCTCACCCGAAGCCTTGGCAGCCAATTGAAATCCCATGGCCCAAGCGGATTGATGCAAAACCTTTaGCCAGTGGGCTTGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: CGLTRSLGSQLKSHGPSGLMQNL*PVGLGP Trigger: TGGACCCAAGCCCACTGGCCAAAGGTTTTGCATCAA...TCCGCTTGGGCCATGGGATTTCAATTGGCTGCCAAGGCTTCGGGTGAGACCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR GCA 90 bp | TCTTCAACACTGGGATCTCTCATCTCTCATCTGTTCCAGCCCATCTCTTTTCTCGAGACCCTGTGTCCTTaGTTCCCGATCCCGCGCAAC | + |
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Preference number: 4 (lower is better) Translates to: SSTLGSLISHLFQPISFLETLCP*FPIPRN Trigger: GTTGCGCGGGATCGGGAAGCAAGGACACAGGGTCTC...GAGAAAAGAGATGGGCTGGAACAGATGAGAGATGAGAGATCCCAGTGTTGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR GCA 90 bp | TCATCATGGGTATGTGTGTCCCATGCTCGGCTACTTTGTCCTCCTCTTCAACACGAGCTTCACACTGCTTaGAGACCACCTCCATGCGAG | + |
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Preference number: 4 (lower is better) Translates to: SSWVCVSHARLLCPPLQHELHTA*RPPPCE Trigger: CTCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTC...GTGTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATACCCATGATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR TCA 90 bp | AAGCAAGGCATCCATCCGAGTTACAGAACCAAGGCTCCACAAGGAAGGGCAAAACTCAGGATCCCTGTGTaGCTTTCATCTGAGCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: KQGIHPSYRTKAPQGRAKLRIPV*LSSEPF Trigger: AAAAGGCTCAGATGAAAGTCACACAGGGATCCTGAG...TTTTGCCCTTCCTTGTGGAGCCTTGGTTCTGTAACTCGGATGGATGCCTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CCA 90 bp | TATGTGTGTCCCATGCTCGGCTACTTTGTCCTCCTCTTCAACACTGGGATCTCTTCACAGCACACACAATaGTACATCCCTGTCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: YVCPMLGYFVLLFNTGISSQHTQ*YIPVSL Trigger: CAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGA...AGAGATCCCAGTGTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| 3UTR CAA 72 bp | ATCATCATGGGTATGTGTGTCCCATGCTCGGCTACTTaGTCCTCCTCTTCAACACTGGGATCTCTCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: IIMGMCVPCSAT*SSSSTLGSLIS Trigger: AGAGATGAGAGATCCCAGTGTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATACCCATGATGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR TCA 90 bp | TCATCCATTATATCATCATGGGTATGTGTGTCCCATGCTCGGCTACTTTGTCCTTTCCTTTCTCTCTGGTaGCATAGAACTGTTCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: SSIISSWVCVSHARLLCPFLSLW*HRTVPG Trigger: CCCCGGAACAGTTCTATGTCACCAGAGAGAAAGGAA...AGGACAAAGTAGCCGAGCATGGGACACACATACCCATGATGATATAATGGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR TCA 90 bp | TCTTCAACACTGGGATCTCTCATCTCTCATCTGTTCCAGCCCATCTCTTTTCTCACTTCTTCTCAGAACTaGAGAGTGGGCTATCACAGC | + |
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Preference number: 4 (lower is better) Translates to: SSTLGSLISHLFQPISFLTSSQN*RVGYHS Trigger: GCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGT...GAGAAAAGAGATGGGCTGGAACAGATGAGAGATGAGAGATCCCAGTGTTGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CCA 90 bp | CTAAAATTCACTCAATTCACATGGATCCCAGCTGTGTGTTGTAAGGCTGAGTCACTCAGAACTGAAGAGTaGGCTATCACAGCACACACA | + |
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Preference number: 4 (lower is better) Translates to: LKFTQFTWIPAVCCKAESLRTEE*AITAHT Trigger: TGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAG...TGACTCAGCCTTACAACACACAGCTGGGATCCATGTGAATTGAGTGAATTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CAA 90 bp | GGGCAACTCAGGTTCCCTTCAGAGGCTTTAGGGACCCTCGTCAGTCCACGAACCCAGGGCTTGCTGGGTTaGAACTTCAGGGCCACACTG | + |
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Preference number: 5 (lower is better) Translates to: GQLRFPSEALGTLVSPRTQGLLG*NFRATL Trigger: CAGTGTGGCCCTGAAGTTCAAACCCAGCAAGCCCTG...GGTTCGTGGACTGACGAGGGTCCCTAAAGCCTCTGAAGGGAACCTGAGTTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS TCA 90 bp | CTTTGGCCAGTGGGCTTGGGTCCATCAGGAAACACATGGCCAAGGTaGGCTTCACACTGCTTGCAGACCACCTCCATGCGAGGACATCCT | + |
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Preference number: 5 (lower is better) Translates to: LWPVGLGPSGNTWPR*ASHCLQTTSMRGHP Trigger: AGGATGTCCTCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCCAAGCCCACTGGCCAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS GCA 90 bp | ACACATGGCCAAGGTGAGCTTCACACTGCTTGCAGACCACCTCCATaGGAGGACATCCTAAGGAAGTGTCCAGTCGTCTCAGGATCCCTG | + |
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Preference number: 5 (lower is better) Translates to: THGQGELHTACRPPP*EDILRKCPVVSGSL Trigger: CAGGGATCCTGAGACGACTGGACACTTCCTTAGGATGTCCTCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTCACCTTGGCCATGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS GCA 90 bp | TGGGTCCATCAGGAAACACATGGCCAAGGTGAGCTTCACACTGCTTaGAGACCACCTCCATGCGAGGACATCCTAAGGAAGTGTCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: WVHQETHGQGELHTA*RPPPCEDILRKCPV Trigger: GACTGGACACTTCCTTAGGATGTCCTCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CAA 90 bp | TATCATCATGGGTATGTGTGTCCCATGCTCGGCTACTTTGTCCTCCTCTTCAACAGAGACCCTGTGTCCTaGCTTCCCGATCCCGCGCAA | + |
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Preference number: 5 (lower is better) Translates to: YHHGYVCPMLGYFVLLFNRDPVS*LPDPAQ Trigger: TTGCGCGGGATCGGGAAGCAAGGACACAGGGTCTCT...GTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATACCCATGATGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CAA 90 bp | AAAGCAAGGCATCCATCCGAGTTACAGAACCAAGGCTCCACAAGGAAGGGCAAACTTTGGCCAGTGGGCTaGGGTCCATCAGGAAACACA | + |
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Preference number: 5 (lower is better) Translates to: KARHPSELQNQGSTRKGKLWPVG*GPSGNT Trigger: TGTGTTTCCTGATGGACCCAAGCCCACTGGCCAAAG...TTTGCCCTTCCTTGTGGAGCCTTGGTTCTGTAACTCGGATGGATGCCTTGCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CCA 90 bp | AGGCCAGCCGGTGCCAGAACAGTACTTCTTCTCAGAACTGAAGAGTaGGCTATCACAGCACACACAATGGTACATCCCTGTCTCCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: RPAGARTVLLLRTEE*AITAHTMVHPCLLV Trigger: AACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGTACTGTTCTGGCACCGGCTGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS TCA 90 bp | AAAATGAAGGCCAGCCGGTGCCAGAACAGTACTTCTTCTCAGAACTaGAGAGTGGGCTATCACAGCACACACAATGGTACATCCCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: KMKASRCQNSTSSQN*RVGYHSTHNGTSLS Trigger: AGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGTACTGTTCTGGCACCGGCTGGCCTTCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CAA 90 bp | AATTCACATGGATCCCAGCTGTGTGTTGTAAGGCTGAGTCAGTGGAGTTTTGGATTCAGGGCCACACTGTaGATGCAAAACCTTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: NSHGSQLCVVRLSQWSFGFRATL*MQNLWP Trigger: TGGCCAAAGGTTTTGCATCAACAGTGTGGCCCTGAA...TCCAAAACTCCACTGACTCAGCCTTACAACACACAGCTGGGATCCATGTGAATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS-3UTR CAA 90 bp | ATCATGGGTATGTGTGTCCCATGCTCGGCTACTTTGTCCTCCTCTTCAACACTGATCCCTGTCTCCTTGTaGTTCAAATACATTCCACTG | + |
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Preference number: 5 (lower is better) Translates to: IMGMCVPCSATLSSSSTLIPVSL*FKYIPL Trigger: CAGTGGAATGTATTTGAACAACAAGGAGACAGGGAT...CAGTGTTGAAGAGGAGGACAAAGTAGCCGAGCATGGGACACACATACCCATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CCA 90 bp | TACTTCTTCTCAGAACTGAAGAGTGGGCTATCACAGCACACACAATaGTACATCCCTGTCTCCTTGTTGTTCAAATACATTCCACTGAAA | + |
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Preference number: 5 (lower is better) Translates to: YFFSELKSGLSQHTQ*YIPVSLLFKYIPLK Trigger: TTTCAGTGGAATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 90 bp | GCTTCGCTTAGAGAGCGCTTGGACTTTGTAAGAGACCCTGTGTCCTaGCTTCCCGATCCCGCGCAACCCCGAGCCAGCCGTCCAGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: ASLRERLDFVRDPVS*LPDPAQPRASRPGA Trigger: GGCGCCTGGACGGCTGGCTCGGGGTTGCGCGGGATCGGGAAGCAAGGACACAGGGTCTCTTACAAAGTCCAAGCGCTCTCTAAGCGAAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 72 bp | AGAGAGCGCTTGGACTTTGTAAGAGACCCTGTGTCCTaGCTTCCCGATCCCGCGCAACCCCGAGCCAGCCGT | + |
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Preference number: 6 (lower is better) Translates to: RERLDFVRDPVS*LPDPAQPRASR Trigger: ACGGCTGGCTCGGGGTTGCGCGGGATCGGGAAGCAAGGACACAGGGTCTCTTACAAAGTCCAAGCGCTCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 90 bp | TCCGGGGTCAGTTTCTTCTGCCAGTCTGCTTCGCTTAGAGAGCGCTaGGACTTTGTAAGAGACCCTGTGTCCTTGCTTCCCGATCCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SGVSFFCQSASLRER*DFVRDPVSLLPDPA Trigger: CGCGGGATCGGGAAGCAAGGACACAGGGTCTCTTACAAAGTCCAAGCGCTCTCTAAGCGAAGCAGACTGGCAGAAGAAACTGACCCCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS TCA 72 bp | GTGGGCTTGGGTCCATCAGGAAACACATGGCCAAGGTaGGCTTCACACTGCTTGCAGACCACCTCCATGCGA | + |
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Preference number: 6 (lower is better) Translates to: VGLGPSGNTWPR*ASHCLQTTSMR Trigger: TCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCCAAGCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS GCA 72 bp | CAAGGTGAGCTTCACACTGCTTGCAGACCACCTCCATaGGAGGACATCCTAAGGAAGTGTCCAGTCGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: QGELHTACRPPP*EDILRKCPVVS Trigger: TGAGACGACTGGACACTTCCTTAGGATGTCCTCGCATGGAGGTGGTCTGCAAGCAGTGTGAAGCTCACCTTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 90 bp | TGTCCAGTCGTCTCAGGATCCCTGTGTGACTTTCATCTGAGCCTTTaGAGCCGTAAGCCTCAGAAAATGAAGGCCAGCCGGTGCCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: CPVVSGSLCDFHLSL*SRKPQKMKASRCQN Trigger: GTTCTGGCACCGGCTGGCCTTCATTTTCTGAGGCTTACGGCTCAAAAGGCTCAGATGAAAGTCACACAGGGATCCTGAGACGACTGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS TCA 72 bp | GCCAGCCGGTGCCAGAACAGTACTTCTTCTCAGAACTaGAGAGTGGGCTATCACAGCACACACAATGGTACA | + |
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Preference number: 6 (lower is better) Translates to: ASRCQNSTSSQN*RVGYHSTHNGT Trigger: TGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGTACTGTTCTGGCACCGGCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CCA 72 bp | TTGAACTTCAGGGCCACACTGTTGATGCAAAACCTTTaGCCAGTGGGCTTGGGTCCATCAGGAAACACATGG | + |
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Preference number: 6 (lower is better) Translates to: LNFRATLLMQNL*PVGLGPSGNTW Trigger: CCATGTGTTTCCTGATGGACCCAAGCCCACTGGCCAAAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 72 bp | TTTGAACTTCAGGGCCACACTGTTGATGCAAAACCTTaGGCCAGTGGGCTTGGGTCCATCAGGAAACACATG | + |
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Preference number: 6 (lower is better) Translates to: FELQGHTVDAKP*ASGLGSIRKHM Trigger: CATGTGTTTCCTGATGGACCCAAGCCCACTGGCCAAAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CCA 72 bp | GGTGCCAGAACAGTACTTCTTCTCAGAACTGAAGAGTaGGCTATCACAGCACACACAATGGTACATCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: GARTVLLLRTEE*AITAHTMVHPC Trigger: ACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGAGAAGAAGTACTGTTCTGGCACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 90 bp | AGTGGGCTATCACAGCACACACAATGGTACATCCCTGTCTCCTTGTaGTTCAAATACATTCCACTGAAAGGCGCTTCAGTTCCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SGLSQHTQWYIPVSL*FKYIPLKGASVPFS Trigger: AGAGAAAGGAACTGAAGCGCCTTTCAGTGGAATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 90 bp | AAGAGTGGGCTATCACAGCACACACAATGGTACATCCCTGTCTCCTaGTTGTTCAAATACATTCCACTGAAAGGCGCTTCAGTTCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: KSGLSQHTQWYIPVS*LFKYIPLKGASVPF Trigger: GAAAGGAACTGAAGCGCCTTTCAGTGGAATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 72 bp | TCACAGCACACACAATGGTACATCCCTGTCTCCTTGTaGTTCAAATACATTCCACTGAAAGGCGCTTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: SQHTQWYIPVSL*FKYIPLKGASV Trigger: AACTGAAGCGCCTTTCAGTGGAATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CAA 72 bp | CTATCACAGCACACACAATGGTACATCCCTGTCTCCTaGTTGTTCAAATACATTCCACTGAAAGGCGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LSQHTQWYIPVS*LFKYIPLKGAS Trigger: TGAAGCGCCTTTCAGTGGAATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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| CDS CCA 72 bp | TCAGAACTGAAGAGTGGGCTATCACAGCACACACAATaGTACATCCCTGTCTCCTTGTTGTTCAAATACATT | + |
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Preference number: 6 (lower is better) Translates to: SELKSGLSQHTQ*YIPVSLLFKYI Trigger: AATGTATTTGAACAACAAGGAGACAGGGATGTACCATTGTGTGTGCTGTGATAGCCCACTCTTCAGTTCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023856.9 |
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