Pregenerated sensors for MSRB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075705Ensembl transcript IDs: ENSMUST00000101800.7, ENSMUST00000115262.9
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCGCCCCCACCCCAGACCGAATGCCTGAGGTTCTGACACTAACGTaGGGCTGCCAGAGAGTGGGTGTGCCCATCTGGGAAAGAAAGCTG | + |
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Preference number: 1 (lower is better) Translates to: PAPTPDRMPEVLTLT*GCQRVGVPIWERKL Trigger: CAGCTTTCTTTCCCAGATGGGCACACCCACTCTCTGGCAGCCCCACGTTAGTGTCAGAACCTCAGGCATTCGGTCTGGGGTGGGGGCGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| 3UTR-3UTR GCA 90 bp | CGGTATCAGCCTACTCCCCTCCTCAAAGGTCACGGGTCATCACCACCCTGGCTGACACTAACGTGGGGCTaGCAGAGAGTGGGTGTGCCC | + |
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Preference number: 2 (lower is better) Translates to: RYQPTPLLKGHGSSPPWLTLTWG*QRVGVP Trigger: GGGCACACCCACTCTCTGGCAGCCCCACGTTAGTGT...CAGCCAGGGTGGTGATGACCCGTGACCTTTGAGGAGGGGAGTAGGCTGATACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| 3UTR-3UTR GCA 90 bp | GGCACATCCTCAGAGCGCCACAGGGGTCAGTGTGGACAGCCAAGGAGATTGGTGGCCAGAGAGTGGGTGTaGCCATCTGGGAAAGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: GTSSERHRGQCGQPRRLVAREWV*PSGKES Trigger: GCTTTCTTTCCCAGATGGGCACACCCACTCTCTGGC...CACCAATCTCCTTGGCTGTCCACACTGACCCCTGTGGCGCTCTGAGGATGTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| 3UTR GCA 72 bp | AGGGGGCAGGGGGCAGGCCATTCGCAGTCCATGTCCTaGAGAGCCCAGAACAGACAGGCACAAGCTTTAGTG | + |
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Preference number: 3 (lower is better) Translates to: RGQGAGHSQSMS*RAQNRQAQALV Trigger: CACTAAAGCTTGTGCCTGTCTGTTCTGGGCTCTGCAGGACATGGACTGCGAATGGCCTGCCCCCTGCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| 3UTR TCA 72 bp | GATTGGTGGCAGTTTGAGGGTCATTTAGAGATGACCTaGACCAAGTCTCCTACAGATTCCAAACAGCCCATG | + |
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Preference number: 3 (lower is better) Translates to: DWWQFEGHLEMT*TKSPTDSKQPM Trigger: CATGGGCTGTTTGGAATCTGTAGGAGACTTGGTTCAGGTCATCTCTAAATGACCCTCAAACTGCCACCAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| CDS-3UTR GCA 90 bp | ACGCTGGACAAAGTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTAATGGGCGTGGCCCAACCCATTaGCACACTTGCCACAGGACA | + |
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Preference number: 4 (lower is better) Translates to: TLDKVVRRGSLPRWPANGRGPTH*HTCHRT Trigger: TGTCCTGTGGCAAGTGTGGCAATGGGTTGGGCCACG...CCCATTAGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCACTTTGTCCAGCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | GTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTAATGGGGCAACAACTGTCTCATTCAGGAACTCGTaGCCCAACCCATTGCCACAC | + |
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Preference number: 4 (lower is better) Translates to: VVRRGSLPRWPANGATTVSFRNS*PNPLPH Trigger: GTGTGGCAATGGGTTGGGCCACGAGTTCCTGAATGA...GACAGTTGTTGCCCCATTAGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | ATCAGCCTACTCCCCTCCTCAAAGGTCACGGGTCATCACCACCCTGGCTGGCATGCTCATAGCTGCACTTaGCACACACGTAGACACCTG | + |
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Preference number: 4 (lower is better) Translates to: ISLLPSSKVTGHHHPGWHAHSCT*HTRRHL Trigger: CAGGTGTCTACGTGTGTGCCAAGTGCAGCTATGAGC...ATGCCAGCCAGGGTGGTGATGACCCGTGACCTTTGAGGAGGGGAGTAGGCTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | AGGTACACGCTGGACAAAGTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTCGTACTTCGAGTGACTaGAGAACAGCTCATAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RYTLDKVVRRGSLPRWPARTSSD*RTAHSC Trigger: GCAGCTATGAGCTGTTCTCCAGTCACTCGAAGTACG...AGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCACTTTGTCCAGCGTGTACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | AGGTACACGCTGGACAAAGTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTGTCACACTGTCTGGGTaGATGGTTTCAGTGAACGCT | + |
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Preference number: 4 (lower is better) Translates to: RYTLDKVVRRGSLPRWPAVTLSG*MVSVNA Trigger: AGCGTTCACTGAAACCATCCACCCAGACAGTGTGAC...AGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCACTTTGTCCAGCGTGTACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR GCA 90 bp | GTATCAGCCTACTCCCCTCCTCAAAGGTCACGGGTCATCACCACCCTGGCTGGCACCCATTGCCACACTTaGCACAGGACACCTTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: VSAYSPPQRSRVITTLAGTHCHT*HRTPLK Trigger: CTTTAAAGGTGTCCTGTGGCAAGTGTGGCAATGGGT...GCCAGCCAGGGTGGTGATGACCCGTGACCTTTGAGGAGGGGAGTAGGCTGATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | GATTTGACCAGAGCAGATCATTCGGTGACTGAGGCTGGAGCGGTTGGCAGGGGAGCTCATAGCTGCACTTaGCACACACGTAGACACCTG | + |
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Preference number: 4 (lower is better) Translates to: DLTRADHSVTEAGAVGRGAHSCT*HTRRHL Trigger: CAGGTGTCTACGTGTGTGCCAAGTGCAGCTATGAGC...TCCCCTGCCAACCGCTCCAGCCTCAGTCACCGAATGATCTGCTCTGGTCAAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | CAAGGCACATCCTCAGAGCGCCACAGGGGTCAGTGTGGACAGCCAAGGAGATTGTTTTCTCAGGGCACTTaGTCACACTGTCTGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: QGTSSERHRGQCGQPRRLFSQGT*SHCLGG Trigger: TCCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAA...CAATCTCCTTGGCTGTCCACACTGACCCCTGTGGCGCTCTGAGGATGTGCCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101800.7 |
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| CDS-3UTR GCA 90 bp | TATCAGCCTACTCCCCTCCTCAAAGGTCACGGGTCATCACCACCCTGGCTGGCAACCCATTGCCACACTTaGCACAGGACACCTTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: YQPTPLLKGHGSSPPWLATHCHT*HRTPLK Trigger: CTTTAAAGGTGTCCTGTGGCAAGTGTGGCAATGGGT...TGCCAGCCAGGGTGGTGATGACCCGTGACCTTTGAGGAGGGGAGTAGGCTGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR TCA 90 bp | ACGCTGGACAAAGTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTAATGGGAGGGACGAACTTCAGTaGGCTGCTAAATATTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: TLDKVVRRGSLPRWPANGRDELQ*AAKYSE Trigger: TTCTGAATATTTAGCAGCTCACTGAAGTTCGTCCCT...CCCATTAGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCACTTTGTCCAGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | AGGTCACGGGTCATCACCACCCTGGCTGGCATAGAAGGATTTGACCAGAGCAGAGTCACACTGTCTGGGTaGATGGTTTCAGTGAACGCT | + |
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Preference number: 4 (lower is better) Translates to: RSRVITTLAGIEGFDQSRVTLSG*MVSVNA Trigger: AGCGTTCACTGAAACCATCCACCCAGACAGTGTGAC...TCTGCTCTGGTCAAATCCTTCTATGCCAGCCAGGGTGGTGATGACCCGTGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | CAAAGGTCACGGGTCATCACCACCCTGGCTGGCATAGAAGGATTTGACCAGAGCACACACGTAGACACCTaGCTCGAAGTGATTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QRSRVITTLAGIEGFDQSTHVDT*LEVILE Trigger: TTCCAGAATCACTTCGAGCCAGGTGTCTACGTGTGT...GCTCTGGTCAAATCCTTCTATGCCAGCCAGGGTGGTGATGACCCGTGACCTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | TCCAAACACACCAATAAGGTACAGTGGCTTTCTCTTGGGAGGTACACGCTGGACTCATTCAGGAACTCGTaGCCCAACCCATTGCCACAC | + |
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Preference number: 4 (lower is better) Translates to: SKHTNKVQWLSLGRYTLDSFRNS*PNPLPH Trigger: GTGTGGCAATGGGTTGGGCCACGAGTTCCTGAATGA...GTCCAGCGTGTACCTCCCAAGAGAAAGCCACTGTACCTTATTGGTGTGTTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR GCA 90 bp | CCCCAAGCTAGAGTGAGGCAAGATGAGTTTGCAGATTATGAAACGGAGTTTTGTCGTGGCCCAACCCATTaGCACACTTGCCACAGGACA | + |
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Preference number: 4 (lower is better) Translates to: PQARVRQDEFADYETEFCRGPTH*HTCHRT Trigger: TGTCCTGTGGCAAGTGTGGCAATGGGTTGGGCCACG...ACAAAACTCCGTTTCATAATCTGCAAACTCATCTTGCCTCACTCTAGCTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | CCAAACACACCAATAAGGTACAGTGGCTTTCTCTTGGGAGGTACACGCTGGACATTTTCTCAGGGCACTTaGTCACACTGTCTGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PNTPIRYSGFLLGGTRWTFSQGT*SHCLGG Trigger: TCCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAA...TGTCCAGCGTGTACCTCCCAAGAGAAAGCCACTGTACCTTATTGGTGTGTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CCA 90 bp | CGGAGTTTTGTTTTCTCTGCCAGAAGGCAAGGATCCAAGAGTTCCCGGTATCAGACACACGTAGACACCTaGCTCGAAGTGATTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: RSFVFSARRQGSKSSRYQTHVDT*LEVILE Trigger: TTCCAGAATCACTTCGAGCCAGGTGTCTACGTGTGT...CTGATACCGGGAACTCTTGGATCCTTGCCTTCTGGCAGAGAAAACAAAACTCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR TCA 90 bp | GATTATGAAACGGAGTTTTGTTTTCTCTGCCAGAAGGCAAGGATCCAAGAGTTCAGGGACGAACTTCAGTaGGCTGCTAAATATTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: DYETEFCFLCQKARIQEFRDELQ*AAKYSE Trigger: TTCTGAATATTTAGCAGCTCACTGAAGTTCGTCCCT...GAACTCTTGGATCCTTGCCTTCTGGCAGAGAAAACAAAACTCCGTTTCATAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CAA 90 bp | AGGTACACGCTGGACAAAGTGGTGAGAAGAGGGTCCCTGCCACGCTGGCCAGCTTTTTTCTCAGGGCACTaGGTCACACTGTCTGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RYTLDKVVRRGSLPRWPAFFSGH*VTLSGW Trigger: CCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAAA...AGCTGGCCAGCGTGGCAGGGACCCTCTTCTCACCACTTTGTCCAGCGTGTACCT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CAA 90 bp | GATTTGACCAGAGCAGATCATTCGGTGACTGAGGCTGGAGCGGTTGGCAGGGGAGAGGCAGCAGCTTCTTaGCCTTTAGGGACGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: DLTRADHSVTEAGAVGRGEAAAS*PLGTNF Trigger: GAAGTTCGTCCCTAAAGGCAAAGAAGCTGCTGCCTC...TCCCCTGCCAACCGCTCCAGCCTCAGTCACCGAATGATCTGCTCTGGTCAAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CAA 90 bp | AGGTCACGGGTCATCACCACCCTGGCTGGCATAGAAGGATTTGACCAGAGCAGAGAGGCAGCAGCTTCTTaGCCTTTAGGGACGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: RSRVITTLAGIEGFDQSREAAAS*PLGTNF Trigger: GAAGTTCGTCCCTAAAGGCAAAGAAGCTGCTGCCTC...TCTGCTCTGGTCAAATCCTTCTATGCCAGCCAGGGTGGTGATGACCCGTGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS-3UTR CAA 90 bp | GAGCTTCCAAACACACCAATAAGGTACAGTGGCTTTCTCTTGGGAGGTACACGCTTTTTCTCAGGGCACTaGGTCACACTGTCTGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: ELPNTPIRYSGFLLGGTRFFSGH*VTLSGW Trigger: CCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAAA...GCGTGTACCTCCCAAGAGAAAGCCACTGTACCTTATTGGTGTGTTTGGAAGCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS TCA 72 bp | GGCACTTGGTCACACTGTCTGGGTGGATGGTTTCAGTaGACGCTGGCCACGGGGATGAGTGTGCGTACTTCG | + |
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Preference number: 6 (lower is better) Translates to: GTWSHCLGGWFQ*TLATGMSVRTS Trigger: CGAAGTACGCACACTCATCCCCGTGGCCAGCGTTCACTGAAACCATCCACCCAGACAGTGTGACCAAGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS TCA 72 bp | TGGGTGGATGGTTTCAGTGAACGCTGGCCACGGGGATaGGTGTGCGTACTTCGAGTGACTGGAGAACAGCTC | + |
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Preference number: 6 (lower is better) Translates to: WVDGFSERWPRG*VCVLRVTGEQL Trigger: GAGCTGTTCTCCAGTCACTCGAAGTACGCACACTCATCCCCGTGGCCAGCGTTCACTGAAACCATCCACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS CCA 72 bp | TGGTCGGTTTTTCTCAGGGCACTTGGTCACACTGTCTaGGTGGATGGTTTCAGTGAACGCTGGCCACGGGGA | + |
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Preference number: 6 (lower is better) Translates to: WSVFLRALGHTV*VDGFSERWPRG Trigger: TCCCCGTGGCCAGCGTTCACTGAAACCATCCACCCAGACAGTGTGACCAAGTGCCCTGAGAAAAACCGACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS GCA 72 bp | TGGGGCCATCATTCAGGAACTCGTGGCCCAACCCATTaGCACACTTGCCACAGGACACCTTTAAAGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: WGHHSGTRGPTH*HTCHRTPLKLL Trigger: CAGAAGCTTTAAAGGTGTCCTGTGGCAAGTGTGGCAATGGGTTGGGCCACGAGTTCCTGAATGATGGCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS CAA 72 bp | GAGCTGCTAAATATTCAGAATCTTGATTGTCCCCGCTaGGGGCCATCATTCAGGAACTCGTGGCCCAACCCA | + |
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Preference number: 6 (lower is better) Translates to: ELLNIQNLDCPR*GPSFRNSWPNP Trigger: TGGGTTGGGCCACGAGTTCCTGAATGATGGCCCCAAGCGGGGACAATCAAGATTCTGAATATTTAGCAGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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| CDS CAA 90 bp | AACTTCAGTGAGCTGCTAAATATTCAGAATCTTGATTGTCCCCGCTaGGGGCCATCATTCAGGAACTCGTGGCCCAACCCATTGCCACAC | + |
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Preference number: 6 (lower is better) Translates to: NFSELLNIQNLDCPR*GPSFRNSWPNPLPH Trigger: GTGTGGCAATGGGTTGGGCCACGAGTTCCTGAATGATGGCCCCAAGCGGGGACAATCAAGATTCTGAATATTTAGCAGCTCACTGAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101800.7 ENSMUST00000115262.9 |
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