Pregenerated sensors for MSR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025044Ensembl transcript IDs: ENSMUST00000026021.14, ENSMUST00000170091.3, ENSMUST00000210525.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAATGGTTCTGCACAGTTAGGTaGGGGGAACAGCAGAAGGTC | + |
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Preference number: 2 (lower is better) Translates to: SRAQHADTPQISNRTLQWFCTVR*GEQQKV Trigger: GACCTTCTGCTGTTCCCCTCACCTAACTGTGCAGAA...CCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGCATGCTGTGCTCGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCAACAAGAAGCCAGGCATaGCATGACACAGGAACCAAT | + |
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Preference number: 2 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPTRSQA*HDTGTN Trigger: ATTGGTTCCTGTGTCATGCCATGCCTGGCTTCTTGT...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR TCA 90 bp | GATGACTTAACTGAATTCCTAGAATTCGTATGCCAGCACAGCTGGGATTGGGGTGAACAGCAGAAGGTCTaGAGAAGGCAGGAACATCCC | + |
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Preference number: 2 (lower is better) Translates to: DDLTEFLEFVCQHSWDWGEQQKV*RRQEHP Trigger: GGGATGTTCCTGCCTTCTTCAGACCTTCTGCTGTTC...ACCCCAATCCCAGCTGTGCTGGCATACGAATTCTAGGAATTCAGTTAAGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR GCA 90 bp | TCACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAATGGTTCCTAGAATTCGTATaGCAGCACAGCTGGGATTGG | + |
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Preference number: 2 (lower is better) Translates to: SRAQHADTPQISNRTLQWFLEFV*QHSWDW Trigger: CCAATCCCAGCTGTGCTGGCATACGAATTCTAGGAA...CCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGCATGCTGTGCTCGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR TCA 90 bp | GATGACTTAACTGAATTCCTAGAATTCGTATGCCAGCACAGCTGGGATTGGGGTCTGAGACAAACTCACTaGCTTATGTTCTGGGCACAC | + |
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Preference number: 2 (lower is better) Translates to: DDLTEFLEFVCQHSWDWGLRQTH*LMFWAH Trigger: GTGTGCCCAGAACATAAGTCAGTGAGTTTGTCTCAG...ACCCCAATCCCAGCTGTGCTGGCATACGAATTCTAGGAATTCAGTTAAGTCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | GATGACTTAACTGAATTCCTAGAATTCGTATGCCAGCACAGCTGGGATTGGGGTCATTTCATCAGACCTTaGAGGCACAAAGGCAGAGAC | + |
|
Preference number: 2 (lower is better) Translates to: DDLTEFLEFVCQHSWDWGHFIRP*RHKGRD Trigger: GTCTCTGCCTTTGTGCCTCCAAGGTCTGATGAAATG...ACCCCAATCCCAGCTGTGCTGGCATACGAATTCTAGGAATTCAGTTAAGTCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCAAAAGAGGCATCAACATaGAAACAACATGGTGTATTA | + |
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Preference number: 2 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPKEAST*KQHGVL Trigger: TAATACACCATGTTGTTTCCATGTTGATGCCTCTTT...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR CAA 90 bp | TGGGCTCAGGTTCTGTCCTGCATAGCCCAAGCTTGTTTTATTAGTTaGACATTTGGCCTCTGGTTTAGCTGCTTCTCTTCCTTACACAAT | + |
|
Preference number: 2 (lower is better) Translates to: WAQVLSCIAQACFIS*TFGLWFSCFSSLHN Trigger: ATTGTGTAAGGAAGAGAAGCAGCTAAACCAGAGGCCAAATGTCAAACTAATAAAACAAGCTTGGGCTATGCAGGACAGAACCTGAGCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAAGGTACTTATGTCAATaGAGGCCCCAACAGCACCCA | + |
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Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETRYLCQ*RPQQHP Trigger: TGGGTGCTGTTGGGGCCTCCATTGACATAAGTACCT...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR TCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCAAGCCAGGCATGGCATaGCACAGGAACCAATGTCAT | + |
|
Preference number: 2 (lower is better) Translates to: CLIETPFLVSMATEHSIFKPGMA*HRNQCH Trigger: ATGACATTGGTTCCTGTGTCATGCCATGCCTGGCTT...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR GCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACACATCTAGGTAAAAGGTaGCAGGGGATGGGAGTCATT | + |
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Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETHLGKR*QGMGVI Trigger: AATGACTCCCATCCCCTGGCACCTTTTACCTAGATG...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR GCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAGCTCAGGTTCTGTCCTaGATAGCCCAAGCTTGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETAQVLS*IAQACF Trigger: AAAACAAGCTTGGGCTATGCAGGACAGAACCTGAGC...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR GCA 90 bp | CTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAACAATGCAAATTTGATCTTAAAAGGGTCTTaGCCCAATATGATCAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: LGGTKAETKPCTSNNANLILKGS*PNMIRE Trigger: CTCCCTGATCATATTGGGGCAAGACCCTTTTAAGAT...CAAATTTGCATTGTTACTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAGCCCTATTCTTTTCCTaGGACAGTGTTCTCTGGTTT | + |
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Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETALFFS*DSVLWF Trigger: AAACCAGAGAACACTGTCCCAGGAAAAGAATAGGGC...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | CTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAACAATGCAAATTTGTCTTCACACATATTTTaGTCCCCACAACAACCCTGT | + |
|
Preference number: 2 (lower is better) Translates to: LGGTKAETKPCTSNNANLSSHIF*SPQQPC Trigger: ACAGGGTTGTTGTGGGGACCAAAATATGTGTGAAGA...CAAATTTGCATTGTTACTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR TCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAGGAACCAATGTCATTTaGAGGAGTTGCAAAAGGATC | + |
|
Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETGTNVI*RSCKRI Trigger: GATCCTTTTGCAACTCCTTCAAATGACATTGGTTCC...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR GCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCGTCCTTCTTAGAACATaGTCGACAGAAATGGGCTCA | + |
|
Preference number: 2 (lower is better) Translates to: CLIETPFLVSMATEHSIFVLLRT*STEMGS Trigger: TGAGCCCATTTCTGTCGAGCATGTTCTAAGAAGGAC...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR TCA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACATACAGAGGAAAGTCCTaGAAAACATGTTCTGTTTAC | + |
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Preference number: 2 (lower is better) Translates to: TTDSQNHWLIPSFFSSETYRGKS*KTCSVY Trigger: GTAAACAGAACATGTTTTTCAGGACTTTCCTCTGTA...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCGAATTAGTGAATGAATaGATGGACAGACCCCTATTT | + |
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Preference number: 2 (lower is better) Translates to: CLIETPFLVSMATEHSIFELVNE*MDRPLF Trigger: AAATAGGGGTCTGTCCATCCATTCATTCACTAATTC...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCAACATTTCATCAGACCTaGGAGGCACAAAGGCAGAGA | + |
|
Preference number: 3 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPTFHQT*EAQRQR Trigger: TCTCTGCCTTTGTGCCTCCAAGGTCTGATGAAATGT...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR CCA 72 bp | GCTGACACACCACAGATAAGCAACAGGACTCTTCAATaGTGCCTCTCAGCGTTTACTTACACGGTCCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: ADTPQISNRTLQ*CLSAFTYTVPL Trigger: CAAGGGGACCGTGTAAGTAAACGCTGAGAGGCACCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR GCA 72 bp | CCCTCTACTCAACAGGTAGAGCATCTAGGTAAAAGGTaGCAGGGGATGGGAGTCATTGTAGCAGAGCATATG | + |
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Preference number: 3 (lower is better) Translates to: PSTQQVEHLGKR*QGMGVIVAEHM Trigger: CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTCTACCTGTTGAGTAGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR GCA 72 bp | GACACACCACAGATAAGCAACAGGACTCTTCAATGGTaGCTCTCAGCGTTTACTTACACGGTCCCCTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: DTPQISNRTLQW*LSAFTYTVPLL Trigger: AAGCAAGGGGACCGTGTAAGTAAACGCTGAGAGGCACCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | GAGCATCTAGGTAAAAGGTGCCAGGGGATGGGAGTCATTGTAGCAGAGCATATGTGTCATTTGAAGGAGTaGCAAAAGGATCCCAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: EHLGKRCQGMGVIVAEHMCHLKE*QKDPRS Trigger: ACTTCTGGGATCCTTTTGCAACTCCTTCAAATGACA...CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR GCA 72 bp | AATGGTGCCTCTCAGCGTTTACTTACACGGTCCCCTTaGTTGATTGAAACACCCTTTCTAGTTAGCATGGCA | + |
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Preference number: 3 (lower is better) Translates to: NGASQRLLTRSP*LIETPFLVSMA Trigger: TGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCAAGGGGACCGTGTAAGTAAACGCTGAGAGGCACCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | GAGCATCTAGGTAAAAGGTGCCAGGGGATGGGAGTCATTGTAGCAGAGCATATGAGGAACCAATGTCATTaGAAGGAGTTGCAAAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: EHLGKRCQGMGVIVAEHMRNQCH*KELQKD Trigger: ATCCTTTTGCAACTCCTTCAAATGACATTGGTTCCT...CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR TCA 72 bp | ATCCTGTCTCTTTTCTTGATCACGAGCACAGCATGCTaGCACACCACAGATAAGCAACAGGACTCTTCAATG | + |
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Preference number: 3 (lower is better) Translates to: ILSLFLITSTAC*HTTDKQQDSSM Trigger: CATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGCATGCTGTGCTCGTGATCAAGAAAAGAGACAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR CCA 72 bp | TCTTTCTTTTCCTCGGAGACACATTTCATCAGACCTTaGAGGCACAAAGGCAGAGACAAAACCTTGTACCAG | + |
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Preference number: 3 (lower is better) Translates to: SFFSSETHFIRP*RHKGRDKTLYQ Trigger: CTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAGGTCTGATGAAATGTGTCTCCGAGGAAAAGAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | TCACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAATGGGCTTGTTTTATTAGTTaGACATTTGGCCTCTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: SRAQHADTPQISNRTLQWACFIS*TFGLWF Trigger: AAACCAGAGGCCAAATGTCAAACTAATAAAACAAGC...CCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGCATGCTGTGCTCGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR TCA 72 bp | AGAAGATGCCCAAAATTCACATCCTGTCTCTTTTCTTaGTCACGAGCACAGCATGCTGACACACCACAGATA | + |
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Preference number: 3 (lower is better) Translates to: RRCPKFTSCLFS*SRAQHADTPQI Trigger: TATCTGTGGTGTGTCAGCATGCTGTGCTCGTGATCAAGAAAAGAGACAGGATGTGAATTTTGGGCATCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAGATCTTAAAAGGGTCTaGCCCCAATATGATCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: TTDSQNHWLIPSFFSSETDLKRV*PQYDQG Trigger: TCCCTGATCATATTGGGGCAAGACCCTTTTAAGATC...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCCAGAAGTCACTTGTGTaGATGACTTGTCCAGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: CLIETPFLVSMATEHSIFQKSLV*MTCPEV Trigger: CACCTCTGGACAAGTCATCAACACAAGTGACTTCTG...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR TCA 72 bp | CTTACACAATCTTCTTCTTTGCTGAGACAAACTCACTaGCTTATGTTCTGGGCACACGTGCATTGTTCCATA | + |
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Preference number: 3 (lower is better) Translates to: LTQSSSLLRQTH*LMFWAHVHCSI Trigger: TATGGAACAATGCACGTGTGCCCAGAACATAAGTCAGTGAGTTTGTCTCAGCAAAGAAGAAGATTGTGTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR-3UTR CAA 90 bp | ACAGAGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACAACTTGTGTTGATGACTaGTCCAGAGGTGAAAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: TEESPEKHVLFTHKEASTTCVDD*SRGERS Trigger: AGACCTTTCACCTCTGGACAAGTCATCAACACAAGT...TGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCTCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCACCATTTTTAGTGCTGTaGGGAAGGGATGCTGTCATT | + |
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Preference number: 4 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPPFLVL*GRDAVI Trigger: AATGACAGCATCCCTTCCTCACAGCACTAAAAATGG...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR GCA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCATCACGGATTCTGAACTaGAGTCAGCATCCTCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPSRILN*SQHPLV Trigger: AACAAGAGGATGCTGACTGCAGTTCAGAATCCGTGA...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | GATGACTTAACTGAATTCCTAGAATTCGTATGCCAGCACAGCTGGGATTGGGGTGGTCAGTTGCCATGCTaGAATTCTGGAAGCGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: DDLTEFLEFVCQHSWDWGGQLPC*NSGSVP Trigger: CGGAACGCTTCCAGAATTTCAGCATGGCAACTGACC...ACCCCAATCCCAGCTGTGCTGGCATACGAATTCTAGGAATTCAGTTAAGTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR CCA 90 bp | ACAGAGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACACCTCCCTGGCTTTCCTaGTGCTCCTGGGTTTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: TEESPEKHVLFTHKEASTPPWLS*CSWVSS Trigger: CGAGGAAACCCAGGAGCACCAGGAAAGCCAGGGAGG...TGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCTCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR GCA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCACTTTTGAGTTTGAAATaGTTTCGATTCTCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPLLSLK*FRFSPP Trigger: TGGAGGAGAGAATCGAAAGCATTTCAAACTCAAAAG...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR GCA 90 bp | GAGCATCTAGGTAAAAGGTGCCAGGGGATGGGAGTCATTGTAGCAGAGCATATGGTCATATTCAGACTCTaGAAGGACTTGGAGATTGCA | + |
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Preference number: 4 (lower is better) Translates to: EHLGKRCQGMGVIVAEHMVIFRL*KDLEIA Trigger: TGCAATCTCCAAGTCCTTGCAGAGTCTGAATATGAC...CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR CCA 90 bp | ACAGAGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACACTTTCCTGGTGCTCCTaGGTTTCCTCGACCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TEESPEKHVLFTHKEASTLSWCS*VSSTSR Trigger: CCTGGAGGTCGAGGAAACCCAGGAGCACCAGGAAAG...TGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCTCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | CTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAACAATGCAAATTTGGGTCCAGGAGGCCCTTaGATGAAGGTGATGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LGGTKAETKPCTSNNANLGPGGP*MKVMFF Trigger: GAAAAACATCACCTTCATTCAAGGGCCTCCTGGACC...CAAATTTGCATTGTTACTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR CCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCTCCTGGAGCACCAGGTaGACCAGTTTGTCCAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: CLIETPFLVSMATEHSIFSWSTR*TSLSSK Trigger: CTTACTGGACAAACTGGTCCACCTGGTGCTCCAGGA...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| 3UTR CAA 72 bp | ATCTTTCTTTTCCTCGGAGACACATTTCATCAGACCTaGGAGGCACAAAGGCAGAGACAAAACCTTGTACCA | + |
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Preference number: 4 (lower is better) Translates to: IFLFLGDTFHQT*EAQRQRQNLVP Trigger: TGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAGGTCTGATGAAATGTGTCTCCGAGGAAAAGAAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | AGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACATGGAGGAGATTGCATCCAGTaGATTCCCATGTTCCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: RKVLKNMFCLLTKRHQHGGDCIQ*IPMFLD Trigger: GTCCAGGAACATGGGAATTCACTGGATGCAATCTCC...TCCATGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCGACTTCAACTTCTCCTaGAGGGAGGGGCCATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: CLIETPFLVSMATEHSIFDFNFS*REGPFL Trigger: TAAAAATGGCCCCTCCCTTCAGGAGAAGTTGAAGTC...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR TCA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCTTTTCCATAGGACCTTaGGATGTGTCACTTGTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: CLIETPFLVSMATEHSIFFSIGP*DVSLVL Trigger: TAACACAAGTGACACATCTCAAGGTCCTATGGAAAA...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR TCA 90 bp | ATGTTCTGTTTACTCACAAAGAGGCATCAACATGGAAACAACATGGTGTATTATGTTTCTGTATGGAGTTaGACATCAAGCAGTGTCATA | + |
|
Preference number: 4 (lower is better) Translates to: MFCLLTKRHQHGNNMVYYVSVWS*TSSSVI Trigger: TATGACACTGCTTGATGTTCAACTCCATACAGAAAC...ATAATACACCATGTTGTTTCCATGTTGATGCCTCTTTGTGAGTAAACAGAACAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR CCA 90 bp | ATGTTCTGTTTACTCACAAAGAGGCATCAACATGGAAACAACATGGTGTATTATATATCATTAAGTCTTTaGTCAGTTGCCATGCTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: MFCLLTKRHQHGNNMVYYISLSL*SVAMLK Trigger: TTTCAGCATGGCAACTGACCAAAGACTTAATGATAT...ATAATACACCATGTTGTTTCCATGTTGATGCCTCTTTGTGAGTAAACAGAACAT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS CCA 90 bp | CTTCTCTCCCTTTTGTCCTTTAGGTCCAGGAGATCCCGACCTCCCTaGCTTTCCTGGTGCTCCTGGGTTTCCTCGACCTCCAGGGAAGCC | + |
|
Preference number: 5 (lower is better) Translates to: LLSLLSFRSRRSRPP*LSWCSWVSSTSREA Trigger: GGCTTCCCTGGAGGTCGAGGAAACCCAGGAGCACCAGGAAAGCCAGGGAGGTCGGGATCTCCTGGACCTAAAGGACAAAAGGGAGAGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
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| CDS CCA 90 bp | CTTTTGTCCTTTAGGTCCAGGAGATCCCGACCTCCCTGGCTTTCCTaGTGCTCCTGGGTTTCCTCGACCTCCAGGGAAGCCAATTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LLSFRSRRSRPPWLS*CSWVSSTSREANLS Trigger: GGACAAATTGGCTTCCCTGGAGGTCGAGGAAACCCAGGAGCACCAGGAAAGCCAGGGAGGTCGGGATCTCCTGGACCTAAAGGACAAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
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| CDS CCA 90 bp | TCGACCTCCAGGGAAGCCAATTTGTCCCCGATCACCTTTAACACCTaGAATACCTCTTATTCCTGGAGCACCAGGTGGACCAGTTTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: STSREANLSPITFNT*NTSYSWSTRWTSLS Trigger: GGACAAACTGGTCCACCTGGTGCTCCAGGAATAAGAGGTATTCCAGGTGTTAAAGGTGATCGGGGACAAATTGGCTTCCCTGGAGGTCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
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| CDS-3UTR CAA 90 bp | TCACGAGCACAGCATGCTGACACACCACAGATAAGCAACAGGACTCTTCAATGGGCAATGAGGGCAGCCTaGAAGGACTTCAACTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SRAQHADTPQISNRTLQWAMRAA*KDFNFS Trigger: GGAGAAGTTGAAGTCCTTCAAGGCTGCCCTCATTGC...CCATTGAAGAGTCCTGTTGCTTATCTGTGGTGTGTCAGCATGCTGTGCTCGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS-3UTR CAA 90 bp | GAGCATCTAGGTAAAAGGTGCCAGGGGATGGGAGTCATTGTAGCAGAGCATATGCCCCTTCTCTCCCTTTaGTCCTTTAGGTCCAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: EHLGKRCQGMGVIVAEHMPLLSL*SFRSRR Trigger: TCTCCTGGACCTAAAGGACAAAAGGGAGAGAAGGGG...CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
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| CDS TCA 90 bp | GGGTCCAGGAGGCCCTTGAATGAAGGTGATGTTTTTCAGTGTCTGTaGGTGTTCCCAGTCCTTCAGTCTGAGGTCGTTGGTGATGTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: GSRRPLNEGDVFQCL*VFPVLQSEVVGDVV Trigger: AACAACATCACCAACGACCTCAGACTGAAGGACTGGGAACACTCACAGACACTGAAAAACATCACCTTCATTCAAGGGCCTCCTGGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
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| CDS CCA 90 bp | AATTTGTCCCCGATCACCTTTAACACCTGGAATACCTCTTATTCCTaGAGCACCAGGTGGACCAGTTTGTCCAGTAAGCCCTCTGTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: NLSPITFNTWNTSYS*STRWTSLSSKPSVS Trigger: GGAGACAGAGGGCTTACTGGACAAACTGGTCCACCTGGTGCTCCAGGAATAAGAGGTATTCCAGGTGTTAAAGGTGATCGGGGACAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | CTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAACAATGCAAATTTGGTCTCCCTTTTCACCTaGGGGTCCAGGAGGCCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LGGTKAETKPCTSNNANLVSLFT*GSRRPL Trigger: CAAGGGCCTCCTGGACCCCAAGGTGAAAAGGGAGAC...CAAATTTGCATTGTTACTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | GAGCATCTAGGTAAAAGGTGCCAGGGGATGGGAGTCATTGTAGCAGAGCATATGTCCAGGGAAGCCAATTaGTCCCCGATCACCTTTAAC | + |
|
Preference number: 5 (lower is better) Translates to: EHLGKRCQGMGVIVAEHMSREAN*SPITFN Trigger: GTTAAAGGTGATCGGGGACAAATTGGCTTCCCTGGA...CATATGCTCTGCTACAATGACTCCCATCCCCTGGCACCTTTTACCTAGATGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS GCA 90 bp | GGGATGCTGTCATTGAACGTGCGTCAAATTTCACGGATTCTGAACTaGAGTCAGCATCCTCTTGTTCATGAGGGCAGAGCCTCTGATTCT | + |
|
Preference number: 5 (lower is better) Translates to: GMLSLNVRQISRILN*SQHPLVHEGRASDS Trigger: AGAATCAGAGGCTCTGCCCTCATGAACAAGAGGATGCTGACTGCAGTTCAGAATCCGTGAAATTTGACGCACGTTCAATGACAGCATCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS TCA 90 bp | CTGTTCCACGTGCGCTTGTTCTTCTTTCACAGACTGGACTTCTGCTaGTACTTTGTACACACGTTCCTCCAATTTACTGATGTCCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: LFHVRLFFFHRLDFC*YFVHTFLQFTDVLL Trigger: CAGGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACAAGCGCACGTGGAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS-3UTR CAA 90 bp | CAGCAATGCATCTGGCACAAGAAAAGAGTCACCCACACTCCACAGCACAGGCCAAATATCATTAAGTCTTaGGTCAGTTGCCATGCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: QQCIWHKKRVTHTPQHRPNIIKS*VSCHAE Trigger: TTCAGCATGGCAACTGACCAAAGACTTAATGATATT...TGGCCTGTGCTGTGGAGTGTGGGTGACTCTTTTCTTGTGCCAGATGCATTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS TCA 90 bp | GCTGTAGATTCACGGACTCTGACATTCAGTGTTTCTGTATGGAGTTaGACATCAAGCAGTGTCATATTCAGACTCTGCAAGGACTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: AVDSRTLTFSVSVWS*TSSSVIFRLCKDLE Trigger: CTCCAAGTCCTTGCAGAGTCTGAATATGACACTGCTTGATGTTCAACTCCATACAGAAACACTGAATGTCAGAGTCCGTGAATCTACAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS-3UTR CAA 90 bp | ACTACAGACTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACAGGGTCCAGGAGGCCCTaGAATGAAGGTGATGTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: TTDSQNHWLIPSFFSSETGSRRP*NEGDVF Trigger: AAAAACATCACCTTCATTCAAGGGCCTCCTGGACCC...TGTCTCCGAGGAAAAGAAAGATGGAATTAGCCAATGATTTTGGGAGTCTGTAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS GCA 90 bp | TTTGTACACACGTTCCTCCAATTTACTGATGTCCTCCTGTTGCTTTaGTGTAGATTCACGGACTCTGACATTCAGTGTTTCTGTATGGAG | + |
|
Preference number: 5 (lower is better) Translates to: FVHTFLQFTDVLLLL*CRFTDSDIQCFCME Trigger: CTCCATACAGAAACACTGAATGTCAGAGTCCGTGAATCTACAGCAAAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
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| CDS CCA 90 bp | TGTTTTACTTCCTGTTCCACGTGCGCTTGTTCTTCTTTCACAGACTaGACTTCTGCTGATACTTTGTACACACGTTCCTCCAATTTACTG | + |
|
Preference number: 5 (lower is better) Translates to: CFTSCSTCACSSFTD*TSADTLYTRSSNLL Trigger: CAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACAAGCGCACGTGGAACAGGAAGTAAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS-3UTR CAA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCCTGTTCCACGTGCGCTaGTTCTTCTTTCACAGACTG | + |
|
Preference number: 5 (lower is better) Translates to: CLIETPFLVSMATEHSIFLFHVR*FFFHRL Trigger: CAGTCTGTGAAAGAAGAACAAGCGCACGTGGAACAG...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | CTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAACAATGCAAATTTGAGGTCGTTGGTGATGTaGTTCAATACTCTCACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: LGGTKAETKPCTSNNANLRSLVM*FNTLTS Trigger: GGAAGTGAGAGTATTGAACAACATCACCAACGACCT...CAAATTTGCATTGTTACTGGTACAAGGTTTTGTCTCTGCCTTTGTGCCTCCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS GCA 90 bp | GATACTTTGTACACACGTTCCTCCAATTTACTGATGTCCTCCTGTTaGTTTGCTGTAGATTCACGGACTCTGACATTCAGTGTTTCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: DTLYTRSSNLLMSSC*FAVDSRTLTFSVSV Trigger: TACAGAAACACTGAATGTCAGAGTCCGTGAATCTACAGCAAAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAAGTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
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| CDS CCA 90 bp | AGAAGAATATCATTAAGTCTTTGGTCAGTTGCCATGCTGAAATTCTaGAAGCGTTCCGTGTCTATAAGGTCGGCTTTTGAGTTTGAAATG | + |
|
Preference number: 5 (lower is better) Translates to: RRISLSLWSVAMLKF*KRSVSIRSAFEFEM Trigger: CATTTCAAACTCAAAAGCCGACCTTATAGACACGGAACGCTTCCAGAATTTCAGCATGGCAACTGACCAAAGACTTAATGATATTCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
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| CDS-3UTR CAA 90 bp | TGCTTGATTGAAACACCCTTTCTAGTTAGCATGGCAACAGAACATAGCATTTTCGGTCGGCTTTTGAGTTaGAAATGCTTTCGATTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: CLIETPFLVSMATEHSIFGRLLS*KCFRFS Trigger: AGAGAATCGAAAGCATTTCAAACTCAAAAGCCGACC...GAAAATGCTATGTTCTGTTGCCATGCTAACTAGAAAGGGTGTTTCAATCAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | AGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACATGGAACTTCTGCTGATACTTaGTACACACGTTCCTCCAAT | + |
|
Preference number: 5 (lower is better) Translates to: RKVLKNMFCLLTKRHQHGTSADT*YTRSSN Trigger: ATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGT...TCCATGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | ACAGAGGAAAGTCCTGAAAAACATGTTCTGTTTACTCACAAAGAGGCATCAACATTCAGTCTGAGGTCGTaGGTGATGTTGTTCAATACT | + |
|
Preference number: 5 (lower is better) Translates to: TEESPEKHVLFTHKEASTFSLRS*VMLFNT Trigger: AGTATTGAACAACATCACCAACGACCTCAGACTGAA...TGTTGATGCCTCTTTGTGAGTAAACAGAACATGTTTTTCAGGACTTTCCTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS GCA 90 bp | AGTGAATTCCCATGTTCCTGGACTGACGAAATCAAGGAATTTAACTaGAGAAGAATATCATTAAGTCTTTGGTCAGTTGCCATGCTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: SEFPCSWTDEIKEFN*RRISLSLWSVAMLK Trigger: TTTCAGCATGGCAACTGACCAAAGACTTAATGATATTCTTCTGCAGTTAAATTCCTTGATTTCGTCAGTCCAGGAACATGGGAATTCACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS-3UTR CAA 90 bp | ATGTTCTGTTTACTCACAAAGAGGCATCAACATGGAAACAACATGGTGTATTATTTTTTCCATAGGACCTaGAGATGTGTCACTTGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: MFCLLTKRHQHGNNMVYYFFHRT*RCVTCV Trigger: AACACAAGTGACACATCTCAAGGTCCTATGGAAAAA...ATAATACACCATGTTGTTTCCATGTTGATGCCTCTTTGTGAGTAAACAGAACAT 37% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000170091.3 |
||
| CDS CAA 90 bp | AACACCTGGAATACCTCTTATTCCTGGAGCACCAGGTGGACCAGTTaGTCCAGTAAGCCCTCTGTCTCCCTTTTCACCTTGGGGTCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: NTWNTSYSWSTRWTS*SSKPSVSLFTLGSR Trigger: CCTGGACCCCAAGGTGAAAAGGGAGACAGAGGGCTTACTGGACAAACTGGTCCACCTGGTGCTCCAGGAATAAGAGGTATTCCAGGTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS CAA 72 bp | TGCTCCTGGGTTTCCTCGACCTCCAGGGAAGCCAATTaGTCCCCGATCACCTTTAACACCTGGAATACCTCT | + |
|
Preference number: 6 (lower is better) Translates to: CSWVSSTSREAN*SPITFNTWNTS Trigger: AGAGGTATTCCAGGTGTTAAAGGTGATCGGGGACAAATTGGCTTCCCTGGAGGTCGAGGAAACCCAGGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS CAA 90 bp | CTTTCCTGGTGCTCCTGGGTTTCCTCGACCTCCAGGGAAGCCAATTaGTCCCCGATCACCTTTAACACCTGGAATACCTCTTATTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LSWCSWVSSTSREAN*SPITFNTWNTSYSW Trigger: CCAGGAATAAGAGGTATTCCAGGTGTTAAAGGTGATCGGGGACAAATTGGCTTCCCTGGAGGTCGAGGAAACCCAGGAGCACCAGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS CCA 72 bp | CCGATCACCTTTAACACCTGGAATACCTCTTATTCCTaGAGCACCAGGTGGACCAGTTTGTCCAGTAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: PITFNTWNTSYS*STRWTSLSSKP Trigger: GGGCTTACTGGACAAACTGGTCCACCTGGTGCTCCAGGAATAAGAGGTATTCCAGGTGTTAAAGGTGATCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS CCA 72 bp | TCCTGTTCCACGTGCGCTTGTTCTTCTTTCACAGACTaGACTTCTGCTGATACTTTGTACACACGTTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SCSTCACSSFTD*TSADTLYTRSS Trigger: GGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACAAGCGCACGTGGAACAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS CAA 72 bp | ACATCAAGCAGTGTCATATTCAGACTCTGCAAGGACTaGGAGATTGCATCCAGTGAATTCCCATGTTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: TSSSVIFRLCKD*EIASSEFPCSW Trigger: CCAGGAACATGGGAATTCACTGGATGCAATCTCCAAGTCCTTGCAGAGTCTGAATATGACACTGCTTGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS CAA 72 bp | GTACACACGTTCCTCCAATTTACTGATGTCCTCCTGTaGCTTTGCTGTAGATTCACGGACTCTGACATTCAG | + |
|
Preference number: 6 (lower is better) Translates to: VHTFLQFTDVLL*LCCRFTDSDIQ Trigger: CTGAATGTCAGAGTCCGTGAATCTACAGCAAAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS CAA 90 bp | ACGTGCGCTTGTTCTTCTTTCACAGACTGGACTTCTGCTGATACTTaGTACACACGTTCCTCCAATTTACTGATGTCCTCCTGTTGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: TCACSSFTDWTSADT*YTRSSNLLMSSCCF Trigger: AAAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACAAGCGCACGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS GCA 72 bp | TACACACGTTCCTCCAATTTACTGATGTCCTCCTGTTaGTTTGCTGTAGATTCACGGACTCTGACATTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: YTRSSNLLMSSC*FAVDSRTLTFS Trigger: ACTGAATGTCAGAGTCCGTGAATCTACAGCAAAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS CCA 72 bp | TCATTAAGTCTTTGGTCAGTTGCCATGCTGAAATTCTaGAAGCGTTCCGTGTCTATAAGGTCGGCTTTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: SLSLWSVAMLKF*KRSVSIRSAFE Trigger: CTCAAAAGCCGACCTTATAGACACGGAACGCTTCCAGAATTTCAGCATGGCAACTGACCAAAGACTTAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 |
||
| CDS CAA 90 bp | TGCTGTAGATTCACGGACTCTGACATTCAGTGTTTCTGTATGGAGTaGAACATCAAGCAGTGTCATATTCAGACTCTGCAAGGACTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: CCRFTDSDIQCFCME*NIKQCHIQTLQGLG Trigger: TCCAAGTCCTTGCAGAGTCTGAATATGACACTGCTTGATGTTCAACTCCATACAGAAACACTGAATGTCAGAGTCCGTGAATCTACAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS TCA 72 bp | TCACGGACTCTGACATTCAGTGTTTCTGTATGGAGTTaGACATCAAGCAGTGTCATATTCAGACTCTGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: SRTLTFSVSVWS*TSSSVIFRLCK Trigger: CTTGCAGAGTCTGAATATGACACTGCTTGATGTTCAACTCCATACAGAAACACTGAATGTCAGAGTCCGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS TCA 72 bp | GTGCGCTTGTTCTTCTTTCACAGACTGGACTTCTGCTaGTACTTTGTACACACGTTCCTCCAATTTACTGAT | + |
|
Preference number: 6 (lower is better) Translates to: VRLFFFHRLDFC*YFVHTFLQFTD Trigger: ATCAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACAAGCGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
||
| CDS CAA 72 bp | TGTTCTTCTTTCACAGACTGGACTTCTGCTGATACTTaGTACACACGTTCCTCCAATTTACTGATGTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: CSSFTDWTSADT*YTRSSNLLMSS Trigger: GGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGAAAGAAGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026021.14 ENSMUST00000170091.3 ENSMUST00000210525.2 |
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