Pregenerated sensors for MSN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031207Ensembl transcript IDs: ENSMUST00000117399.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGAGACAAGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATaGGAGGTAGAAGAAATAAGAATGGCTAAACATCTCTTTTATCCT | + |
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Preference number: 1 (lower is better) Translates to: TETRPTGTRFVIGPI*EVEEIRMAKHLFYP Trigger: AGGATAAAAGAGATGTTTAGCCATTCTTATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCTTGTCTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTGCTCCAAAGATGTGCTaGGGCAGGGGCCTTTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: AEGCSGLRILHRGTRQPFAPKMC*GRGLSR Trigger: CCTAGAAAGGCCCCTGCCCCAGCACATCTTTGGAGC...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATTCAAACCAAAAGGAATaGGTGTCTCTGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: AGVALTTDLTQEKKGSKDSNQKE*VSLSWG Trigger: GCCCCAGCTCAGAGACACGCATTCCTTTTGGTTTGA...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATAAAAGGAGATTCCATTaGCACCACAGTGGGCCATTT | + |
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Preference number: 2 (lower is better) Translates to: AGVALTTDLTQEKKGSKDKRRFH*HHSGPF Trigger: AAATGGCCCACTGTGGTGCCAATGGAATCTCCTTTT...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATAACAGTAAGTGTATATaGGGAGGGGGTGCTTGTCAA | + |
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Preference number: 2 (lower is better) Translates to: AGVALTTDLTQEKKGSKDNSKCI*GGGACQ Trigger: TTGACAAGCACCCCCTCCCCATATACACTTACTGTT...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR GCA 90 bp | GAACCTGGACTATCATGGGCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGACAATATTCCATCTTTaGAAATCACAGGACTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: EPGLSWAGVALTTDLTQETIFHL*KSQDWQ Trigger: TTGCCAGTCCTGTGATTTGCAAAGATGGAATATTGT...CTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGCCCATGATAGTCCAGGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CCA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCTGCGTGTCTCTGAGCTaGGGCGGGGAGAAATGCTCT | + |
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Preference number: 2 (lower is better) Translates to: DKANSLLLSLNNTIFHLCCVSLS*GGEKCS Trigger: AGAGCATTTCTCCCCGCCCCAGCTCAGAGACACGCA...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTCTCTTCATCCCATCTTaGTTAGAAACTAAATCCCTA | + |
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Preference number: 2 (lower is better) Translates to: AEGCSGLRILHRGTRQPFLFIPS*LETKSL Trigger: TAGGGATTTAGTTTCTAATCAAGATGGGATGAAGAG...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATAAAAACTATGGGAGTGTaGGGACAAGGAAGAAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RPTGTRFVIGPIWEVEEIKTMGV*GQGRRR Trigger: CCTCCTTCTTCCTTGTCCCCACACTCCCATAGTTTT...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR CAA 90 bp | AGAAGAAAGGCTCCAAAGATGTGCTGGGGCAGGGGCCTTTCTAGGTaGTTAGTGAATCTCTTGAATGCACTATTTCCTTTATCTCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: RRKAPKMCWGRGLSR*LVNLLNALFPLSLH Trigger: ATGAAGAGATAAAGGAAATAGTGCATTCAAGAGATTCACTAACAACCTAGAAAGGCCCCTGCCCCAGCACATCTTTGGAGCCTTTCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR CAA 90 bp | AAGATGTGCTGGGGCAGGGGCCTTTCTAGGTTGTTAGTGAATCTCTaGAATGCACTATTTCCTTTATCTCTTCATCCCATCTTGATTAGA | + |
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Preference number: 2 (lower is better) Translates to: KMCWGRGLSRLLVNL*NALFPLSLHPILIR Trigger: TCTAATCAAGATGGGATGAAGAGATAAAGGAAATAGTGCATTCAAGAGATTCACTAACAACCTAGAAAGGCCCCTGCCCCAGCACATCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR TCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATATCTAGAGAGCTAGGTTaGATGAGTGTGACAAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: RPTGTRFVIGPIWEVEEISRELG*MSVTKK Trigger: CTTCTTTGTCACACTCATTCAACCTAGCTCTCTAGA...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR GCA 72 bp | CAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATGTaGTGGGGCAGGGGCCTTTCTAGGTTGTTAGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: QTSLKRRKAPKM*WGRGLSRLLVN Trigger: ATTCACTAACAACCTAGAAAGGCCCCTGCCCCAGCACATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR CCA 72 bp | ACCTCACTCAAGAGAAGAAAGGCTCCAAAGATGTGCTaGGGCAGGGGCCTTTCTAGGTTGTTAGTGAATCTC | + |
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Preference number: 3 (lower is better) Translates to: TSLKRRKAPKMC*GRGLSRLLVNL Trigger: GAGATTCACTAACAACCTAGAAAGGCCCCTGCCCCAGCACATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR GCA 72 bp | CTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTaGAAATCACAGGACTGGCAAGGGATGGGAGCTAGC | + |
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Preference number: 3 (lower is better) Translates to: LLLSLNNTIFHL*KSQDWQGMGAS Trigger: GCTAGCTCCCATCCCTTGCCAGTCCTGTGATTTGCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR TCA 72 bp | GGGCGGGGAGAAATGCTCTATTCTAGAGAGCTAGGTTaGATGAGTGTGACAAAGAAGGAAAAGGAGATTCCA | + |
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Preference number: 3 (lower is better) Translates to: GRGEMLYSRELG*MSVTKKEKEIP Trigger: TGGAATCTCCTTTTCCTTCTTTGTCACACTCATTCAACCTAGCTCTCTAGAATAGAGCATTTCTCCCCGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR-3UTR CAA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCGGCTATACTGAACGTTaGGCATGGCTCCAAGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: DKANSLLLSLNNTIFHLCGYTER*AWLQGF Trigger: AAAGCCTTGGAGCCATGCCAAACGTTCAGTATAGCC...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR TCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTGGACAGCATCCTCCCTaGGCATGCCCCGGTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AEGCSGLRILHRGTRQPFGQHPP*ACPGAP Trigger: AGGAGCACCGGGGCATGCTCAGGGAGGATGCTGTCC...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR TCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATCGCATGTACAGCTCATaGTTTCCCATGCACAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: AGVALTTDLTQEKKGSKDRMYSS*FPMHRA Trigger: GGCCCTGTGCATGGGAAATCATGAGCTGTACATGCG...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTCAACTGGGAGATCCGTaGCGTCAGCTCTGCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: AEGCSGLRILHRGTRQPFQLGDP*RQLCHF Trigger: GAAATGGCAGAGCTGACGGCACGGATCTCCCAGTTG...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | ATGAGGGAGGATTGCTGGGTGACTGACAGACAAGGGCTACTCTTACTCATCATATCCTGGGTCTTCTTCTaGTCCCGAGAAGCCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: MREDCWVTDRQGLLLLIISWVFF*SREACS Trigger: GCTGCAGGCTTCTCGGGACCAGAAGAAGACCCAGGA...TATGATGAGTAAGAGTAGCCCTTGTCTGTCAGTCACCCAGCAATCCTCCCTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATAGAAAGAACAGGCGCTaGGTGATATCCTGGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: AGVALTTDLTQEKKGSKDRKNRR*VISWIS Trigger: ACTGATCCAGGATATCACCCAGCGCCTGTTCTTTCT...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR TCA 90 bp | ATGAGGGAGGATTGCTGGGTGACTGACAGACAAGGGCTACTCTTACTCATCATAAGAACAGGCGCTGGGTaGTATCCTGGATCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: MREDCWVTDRQGLLLLIIRTGAG*YPGSVL Trigger: AAGAACTGATCCAGGATATCACCCAGCGCCTGTTCT...TATGATGAGTAAGAGTAGCCCTTGTCTGTCAGTCACCCAGCAATCCTCCCTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTCTTCCGCACATCCTGTaGAGTCACCTTCTTATTGAG | + |
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Preference number: 4 (lower is better) Translates to: AEGCSGLRILHRGTRQPFLPHIL*SHLLIE Trigger: CTCAATAAGAAGGTGACTGCACAGGATGTGCGGAAG...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR TCA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATTACATTTCCAGGTCTTaGGCAATCTTGAGATATTCC | + |
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Preference number: 4 (lower is better) Translates to: AGVALTTDLTQEKKGSKDYISRS*AILRYS Trigger: GGAATATCTCAAGATTGCTCAAGACCTGGAAATGTA...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTTGCTCCAAGACTCTTTaGGGAAGCAACTTATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: AEGCSGLRILHRGTRQPFCSKTL*GSNLSP Trigger: TGGAGATAAGTTGCTTCCCCAAAGAGTCTTGGAGCA...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCCAATGGTGTCAGGCTTaGGCCGACGCATGTACAGCT | + |
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Preference number: 4 (lower is better) Translates to: DKANSLLLSLNNTIFHLCQWCQA*ADACTA Trigger: AGCTGTACATGCGTCGGCGCAAGCCTGACACCATTG...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATAACCATCTGGGCCTTTTaGTGCCATTCCACAGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: RPTGTRFVIGPIWEVEEITIWAF*CHSTAS Trigger: TGAGGCTGTGGAATGGCAGCAAAAGGCCCAGATGGT...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | CCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCAAATCACAGGACTGCTTCTTGACGCTCCTTaGCTAGCTTTTCGGCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PPSVPKQHNIPSLQITGLLLDAP*LAFRPH Trigger: GTGAGGCCGAAAAGCTAGCCAAGGAGCGTCAAGAAG...CAGTCCTGTGATTTGCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCATGCCCTCCTTCACTTaGAGAAAGAACAGGCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DKANSLLLSLNNTIFHLCMPSFT*RKNRRW Trigger: CCAGCGCCTGTTCTTTCTGCAAGTGAAGGAGGGCAT...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATATCTTCCTGTACCATCTaGGCCTTTTGCTGCCATTCC | + |
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Preference number: 4 (lower is better) Translates to: RPTGTRFVIGPIWEVEEISSCTI*AFCCHS Trigger: GGAATGGCAGCAAAAGGCCCAGATGGTACAGGAAGA...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR CAA 72 bp | GCTCCAAAGATGTGCTGGGGCAGGGGCCTTTCTAGGTaGTTAGTGAATCTCTTGAATGCACTATTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: APKMCWGRGLSR*LVNLLNALFPL Trigger: TAAAGGAAATAGTGCATTCAAGAGATTCACTAACAACCTAGAAAGGCCCCTGCCCCAGCACATCTTTGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| 3UTR CAA 72 bp | TGGGGCAGGGGCCTTTCTAGGTTGTTAGTGAATCTCTaGAATGCACTATTTCCTTTATCTCTTCATCCCATC | + |
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Preference number: 4 (lower is better) Translates to: WGRGLSRLLVNL*NALFPLSLHPI Trigger: GATGGGATGAAGAGATAAAGGAAATAGTGCATTCAAGAGATTCACTAACAACCTAGAAAGGCCCCTGCCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATATCCTTGTTGAGTTTGTaGTGCTCCAAGACTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RPTGTRFVIGPIWEVEEISLLSL*CSKTLW Trigger: CCAAAGAGTCTTGGAGCAGCACAAACTCAACAAGGA...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATAATAGTTTTCACCACCTaGTCAAACAGCTGCTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: RPTGTRFVIGPIWEVEEIIVFTT*SNSCLP Trigger: TGGCAAGCAGCTGTTTGACCAGGTGGTGAAAACTAT...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR GCA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATAACTCAAACTCATCAATaGGTTGTTTGGTGTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: RPTGTRFVIGPIWEVEEITQTHQ*VVWCCP Trigger: AGGGCAACACCAAACAACGCATTGATGAGTTTGAGT...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CCA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCCGCTGGGTGATATCCTaGATCAGTTCTTCAGATACA | + |
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Preference number: 4 (lower is better) Translates to: DKANSLLLSLNNTIFHLCRWVIS*ISSSDT Trigger: TGTATCTGAAGAACTGATCCAGGATATCACCCAGCG...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR TCA 90 bp | GATAAAGCCAATTCCCTCCTTCTGTCCCTAAACAACACAATATTCCATCTTTGCAGTAAATGTCGTCATTaGGAATGCCCTCCTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: DKANSLLLSLNNTIFHLCSKCRH*ECPPSL Trigger: AAGTGAAGGAGGGCATTCTCAATGACGACATTTACT...GCAAAGATGGAATATTGTGTTGTTTAGGGACAGAAGGAGGGAATTGGCTTTATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | GCAGGGGTAGCCCTGACCACAGACCTCACTCAAGAGAAGAAAGGCTCCAAAGATATCTGGCGCAGGGTCTaGTATTTGTCTCGTCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: AGVALTTDLTQEKKGSKDIWRRV*YLSRPS Trigger: ACTGGGACGAGACAAATACAAGACCCTGCGCCAGAT...ATCTTTGGAGCCTTTCTTCTCTTGAGTGAGGTCTGTGGTCAGGGCTACCCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | GCTGAGGGATGCTCTGGACTAAGGATACTGCATAGAGGGACAAGACAGCCTTTTTACCATCTGGGCCTTTaGCTGCCATTCCACAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: AEGCSGLRILHRGTRQPFYHLGL*LPFHSL Trigger: GAGGCTGTGGAATGGCAGCAAAAGGCCCAGATGGTA...AAAAGGCTGTCTTGTCCCTCTATGCAGTATCCTTAGTCCAGAGCATCCCTCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | ATGAGGGAGGATTGCTGGGTGACTGACAGACAAGGGCTACTCTTACTCATCATACTGCTCCAAGACTCTTaGGGGAAGCAACTTATCTCC | + |
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Preference number: 5 (lower is better) Translates to: MREDCWVTDRQGLLLLIILLQDS*GKQLIS Trigger: GGAGATAAGTTGCTTCCCCAAAGAGTCTTGGAGCAG...TATGATGAGTAAGAGTAGCCCTTGTCTGTCAGTCACCCAGCAATCCTCCCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATATCAATGGTGTCAGGCTaGCGCCGACGCATGTACAGC | + |
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Preference number: 5 (lower is better) Translates to: RPTGTRFVIGPIWEVEEISMVSG*RRRMYS Trigger: GCTGTACATGCGTCGGCGCAAGCCTGACACCATTGA...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATACTGCTCTTCCAGCTCTaGCTGAGCCTTCTTAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RPTGTRFVIGPIWEVEEILLFQL*LSLLSL Trigger: CAGACTAAGAAGGCTCAGCAAGAGCTGGAAGAGCAG...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | AGGCCCACTGGGACTAGATTTGTAATAGGTCCAATATGGGAGGTAGAAGAAATATGGTCCTTGTTGAGTTaGTGCTGCTCCAAGACTCTT | + |
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Preference number: 5 (lower is better) Translates to: RPTGTRFVIGPIWEVEEIWSLLS*CCSKTL Trigger: AAGAGTCTTGGAGCAGCACAAACTCAACAAGGACCA...TATTTCTTCTACCTCCCATATTGGACCTATTACAAATCTAGTCCCAGTGGGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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| CDS-3UTR CAA 90 bp | ATGAGGGAGGATTGCTGGGTGACTGACAGACAAGGGCTACTCTTACTCATCATAATACATTTCCAGGTCTaGAGCAATCTTGAGATATTC | + |
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Preference number: 5 (lower is better) Translates to: MREDCWVTDRQGLLLLIIIHFQV*SNLEIF Trigger: GAATATCTCAAGATTGCTCAAGACCTGGAAATGTAT...TATGATGAGTAAGAGTAGCCCTTGTCTGTCAGTCACCCAGCAATCCTCCCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117399.2 |
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