Pregenerated sensors for MSMP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078719Ensembl transcript IDs: ENSMUST00000107884.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGGAAGTTGGCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAACGGGCCCTCCCCCTTTaGAGGGCAGCCGAGGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RKLAAASGFPESGSSSEQRALPL*RAAEGQ Trigger: CTGACCCTCGGCTGCCCTGCAAAGGGGGAGGGCCCG...TTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGCCAACTTCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CCA 90 bp | TTGGCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCACTCCGAGGATCCCCTTaGCTTGGCCAGCCCAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LAAASGFPESGSSSEQSALRGSP*LGQPRA Trigger: TGCTCTGGGCTGGCCAAGCCAAGGGGATCCTCGGAG...TGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CCA 90 bp | CTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGGGCACACCACCAAGCAGATaGTCCTCCAGCCTCCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: LLVVSLKVAAAVSNQQMGTPPSR*SSSLRG Trigger: TCCTCGGAGGCTGGAGGACCATCTGCTTGGTGGTGT...GCCCATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CCA 90 bp | CAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGAGGATCCCCTTGGCTTaGCCAGCCCAGAGCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: QLLVVSLKVAAAVSNQQMRIPLA*PAQSIL Trigger: AAGGATGCTCTGGGCTGGCCAAGCCAAGGGGATCCT...CATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CCA 90 bp | GGAGGAAGTTGGCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCTGCAGACAGGTACAATaGAAACAGTCCTTGCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: GGSWQLLVVSLKVAAAVSCRQVQ*KQSLRS Trigger: GCTCCGCAAGGACTGTTTCCATTGTACCTGTCTGCA...GCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGCCAACTTCCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR GCA 90 bp | GCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATAATGGAAACAGTCCTTaGGGAGCCAAGATTCACCCA | + |
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Preference number: 4 (lower is better) Translates to: AAASGFPESGSSSEQSADNGNSP*GAKIHP Trigger: TGGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATT...ATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | GGAAGTTGGCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATTCGGGCCCTCCCCCTTaGCAGGGCAGCCGAGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: GSWQLLVVSLKVAAAVSNSGPPP*QGSRGS Trigger: TGACCCTCGGCTGCCCTGCAAAGGGGGAGGGCCCGA...ATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGCCAACTTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | TTGGCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCACCTCCGAGGATCCCCTaGGCTTGGCCAGCCCAGAGC | + |
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Preference number: 5 (lower is better) Translates to: LAAASGFPESGSSSEQSAPPRIP*AWPAQS Trigger: GCTCTGGGCTGGCCAAGCCAAGGGGATCCTCGGAGG...TGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | CAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGGAGGATCCCCTTGGCTaGGCCAGCCCAGAGCATCCT | + |
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Preference number: 5 (lower is better) Translates to: QLLVVSLKVAAAVSNQQMEDPLG*ASPEHP Trigger: AGGATGCTCTGGGCTGGCCAAGCCAAGGGGATCCTC...CATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS TCA 90 bp | GCCTCCTGTAGCACTTCACACTCAGCAGGGAAGTCAATAGGATGCTaGGCCGTGTCACAGCAGCCCACACCAACAGGATGCAGACAGGTA | + |
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Preference number: 5 (lower is better) Translates to: ASCSTSHSAGKSIGC*AVSQQPTPTGCRQV Trigger: TACCTGTCTGCATCCTGTTGGTGTGGGCTGCTGTGACACGGCTCAGCATCCTATTGACTTCCCTGCTGAGTGTGAAGTGCTACAGGAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | GCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGGGCAATGGAAACAGTCCTaGCGGAGCCAAGATTCACCC | + |
|
Preference number: 5 (lower is better) Translates to: AASGFPESGSSSEQSADGQWKQS*RSQDSP Trigger: GGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATTG...CCCATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS CCA 90 bp | GCCGTGTCACAGCAGCCCACACCAACAGGATGCAGACAGGTACAATaGAAACAGTCCTTGCGGAGCCAAGATTCACCCAGAGTGAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: AVSQQPTPTGCRQVQ*KQSLRSQDSPRVKY Trigger: ATACTTCACTCTGGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATTGTACCTGTCTGCATCCTGTTGGTGTGGGCTGCTGTGACACGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | GCAGCTGCTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGCAGGGAGCTTGAGCTaGGAAGTAACACTTGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: AAASGFPESGSSSEQSADAGSLS*EVTLAA Trigger: AGCAGCAAGTGTTACTTCCAAGCTCAAGCTCCCTGC...ATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAGCAGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS-3UTR CAA 90 bp | CTAGTGGTTTCCCTGAAAGTGGCAGCAGCAGTGAGCAATCAGCAGATGGGCAAGGTAGTGGCAGGGAGCTaGAGCTTGGAAGTAACACTT | + |
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Preference number: 5 (lower is better) Translates to: LVVSLKVAAAVSNQQMGKVVAGS*SLEVTL Trigger: AAGTGTTACTTCCAAGCTCAAGCTCCCTGCCACTAC...CTTGCCCATCTGCTGATTGCTCACTGCTGCTGCCACTTTCAGGGAAACCACTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS TCA 90 bp | AGGTACAATGGAAACAGTCCTTGCGGAGCCAAGATTCACCCAGAGTaGAGTATTTACCCTCGTAGTGGCAGGGAGCTTGAGCTTGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: RYNGNSPCGAKIHPE*SIYPRSGRELELGS Trigger: ACTTCCAAGCTCAAGCTCCCTGCCACTACGAGGGTAAATACTTCACTCTGGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATTGTACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS CCA 72 bp | CCGGGTGCTGTAGGAACAGAGACACCACCAAGCAGATaGTCCTCCAGCCTCCGAGGATCCCCTTGGCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: PGAVGTETPPSR*SSSLRGSPWLG Trigger: GCCAAGCCAAGGGGATCCTCGGAGGCTGGAGGACCATCTGCTTGGTGGTGTCTCTGTTCCTACAGCACCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS TCA 72 bp | AGCACTTCACACTCAGCAGGGAAGTCAATAGGATGCTaGGCCGTGTCACAGCAGCCCACACCAACAGGATGC | + |
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Preference number: 6 (lower is better) Translates to: STSHSAGKSIGC*AVSQQPTPTGC Trigger: GCATCCTGTTGGTGTGGGCTGCTGTGACACGGCTCAGCATCCTATTGACTTCCCTGCTGAGTGTGAAGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS CCA 72 bp | CAGCAGCCCACACCAACAGGATGCAGACAGGTACAATaGAAACAGTCCTTGCGGAGCCAAGATTCACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: QQPTPTGCRQVQ*KQSLRSQDSPR Trigger: TCTGGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATTGTACCTGTCTGCATCCTGTTGGTGTGGGCTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS TCA 72 bp | GGAAACAGTCCTTGCGGAGCCAAGATTCACCCAGAGTaGAGTATTTACCCTCGTAGTGGCAGGGAGCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: GNSPCGAKIHPE*SIYPRSGRELE Trigger: CTCAAGCTCCCTGCCACTACGAGGGTAAATACTTCACTCTGGGTGAATCTTGGCTCCGCAAGGACTGTTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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| CDS CAA 72 bp | CCAACAGGATGCAGACAGGTACAATGGAAACAGTCCTaGCGGAGCCAAGATTCACCCAGAGTGAAGTATTTA | + |
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Preference number: 6 (lower is better) Translates to: PTGCRQVQWKQS*RSQDSPRVKYL Trigger: TAAATACTTCACTCTGGGTGAATCTTGGCTCCGCAAGGACTGTTTCCATTGTACCTGTCTGCATCCTGTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107884.3 |
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