Pregenerated sensors for MSMO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031604Ensembl transcript IDs: ENSMUST00000034015.11, ENSMUST00000147419.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTCAAACCCAGACCAGAGCAGGTTTCAGTCACTCGCTCACCAGGTaGTACACTCACTTCGTGATAGCTTCACTTCAGGTAATTTCTAAA | + |
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Preference number: 1 (lower is better) Translates to: GQTQTRAGFSHSLTR*YTHFVIASLQVISK Trigger: TTTAGAAATTACCTGAAGTGAAGCTATCACGAAGTGAGTGTATCACCTGGTGAGCGAGTGACTGAAACCTGCTCTGGTCTGGGTTTGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR TCA 90 bp | GGAAACAGACAGAGAAGTGAATTCAAGCTCAAGATACGATTTCAATaGTCACCTGACACACAAAGACAAGGGGTGGACAGTGGAAGTGGG | + |
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Preference number: 1 (lower is better) Translates to: GNRQRSEFKLKIRFQ*SPDTQRQGVDSGSG Trigger: CCCACTTCCACTGTCCACCCCTTGTCTTTGTGTGTCAGGTGATCATTGAAATCGTATCTTGAGCTTGAATTCACTTCTCTGTCTGTTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR-3UTR TCA 90 bp | AGTTCCCGAAACCTTTTGGTGAGGTTAGCAATATGGCCTTTAAAACCTCCTGATGTGGCCAGCTGCAGTTaGGGAAGGCGTCGAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: SSRNLLVRLAIWPLKPPDVASCS*GRRRVG Trigger: CCCCACTCGACGCCTTCCTCAACTGCAGCTGGCCAC...ATCAGGAGGTTTTAAAGGCCATATTGCTAACCTCACCAAAAGGTTTCGGGAACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR-3UTR TCA 90 bp | CCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGCTCAAGATACGATTTCAATACATCACGTAGGAAATaGGCCAATTTACAAGATGCC | + |
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Preference number: 2 (lower is better) Translates to: PAPETDREVNSSSRYDFNTSRRK*ANLQDA Trigger: GGCATCTTGTAAATTGGCTCATTTCCTACGTGATGT...ATTGAAATCGTATCTTGAGCTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR-3UTR CCA 90 bp | ACAAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAACGTTTTTATCACTTaGCAGCCAAGTCCCCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: TKITFISPAPETDREVNSNVFIT*QPSPQK Trigger: CTTCTGGGGACTTGGCTGCCAAGTGATAAAAACGTT...TGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR-3UTR TCA 90 bp | CCGCAAGTAACTGGAAAATCTTTAGGCTATAATATTCTATGTACATCACGTAGGGGCAAACATTATTGTTaGGAATTTTCCGAACTGACC | + |
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Preference number: 2 (lower is better) Translates to: PQVTGKSLGYNILCTSRRGKHYC*EFSELT Trigger: GGTCAGTTCGGAAAATTCTCAACAATAATGTTTGCC...CCTACGTGATGTACATAGAATATTATAGCCTAAAGATTTTCCAGTTACTTGCGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR TCA 72 bp | CAGAGAAGTGAATTCAAGCTCAAGATACGATTTCAATaGTCACCTGACACACAAAGACAAGGGGTGGACAGT | + |
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Preference number: 3 (lower is better) Translates to: QRSEFKLKIRFQ*SPDTQRQGVDS Trigger: ACTGTCCACCCCTTGTCTTTGTGTGTCAGGTGATCATTGAAATCGTATCTTGAGCTTGAATTCACTTCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR-3UTR CAA 90 bp | TGGACAGTGGAAGTGGGGCTCCTCAATTTAAAAAGACCGCAAGTAACTGGAAAAAGGCAAACATTATTGTaGAGAATTTTCCGAACTGAC | + |
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Preference number: 3 (lower is better) Translates to: WTVEVGLLNLKRPQVTGKRQTLL*RIFRTD Trigger: GTCAGTTCGGAAAATTCTCAACAATAATGTTTGCCT...TTTTCCAGTTACTTGCGGTCTTTTTAAATTGAGGAGCCCCACTTCCACTGTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR TCA 72 bp | CATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTaGATTCAAGCTCAAGATACGATTTCAATGATCACC | + |
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Preference number: 3 (lower is better) Translates to: HLFHQLRKQTEK*IQAQDTISMIT Trigger: GGTGATCATTGAAATCGTATCTTGAGCTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR TCA 72 bp | ACACCATGTCTTAAACTAGAAGGCAAACATTATTGTTaGGAATTTTCCGAACTGACCAGTGTATGTAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: TPCLKLEGKHYC*EFSELTSVCKR Trigger: CCTTTTACATACACTGGTCAGTTCGGAAAATTCTCAACAATAATGTTTGCCTTCTAGTTTAAGACATGGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR GCA 90 bp | TGGACAGTGGAAGTGGGGCTCCTCAATTTAAAAAGACCGCAAGTAACTGGAAAAACGTATGGTCACCCATaGCCACAGGAGAATTACGTG | + |
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Preference number: 4 (lower is better) Translates to: WTVEVGLLNLKRPQVTGKTYGHP*PQENYV Trigger: CACGTAATTCTCCTGTGGGCATGGGTGACCATACGT...TTTTCCAGTTACTTGCGGTCTTTTTAAATTGAGGAGCCCCACTTCCACTGTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | AGAAAGAATAGTCCTAACCTGGTCAAACCCAGACCAGAGCAGGTTTCAGTCACTATGAAGTTCATGTGGTaGAAATCATGGTGCCGAGCG | + |
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Preference number: 4 (lower is better) Translates to: RKNSPNLVKPRPEQVSVTMKFMW*KSWCRA Trigger: CGCTCGGCACCATGATTTCCACCACATGAACTTCAT...AGTGACTGAAACCTGCTCTGGTCTGGGTTTGACCAGGTTAGGACTATTCTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR GCA 90 bp | CCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGCTCAAGATACGATTTCAATCAGGGAGCCCCAGGTTaGGATCTGGAACTTTGTATA | + |
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Preference number: 4 (lower is better) Translates to: PAPETDREVNSSSRYDFNQGAPG*DLELCI Trigger: TATACAAAGTTCCAGATCGCAACCTGGGGCTCCCTG...ATTGAAATCGTATCTTGAGCTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR TCA 90 bp | CCGCAAGTAACTGGAAAATCTTTAGGCTATAATATTCTATGTACATCACGTAGGCCAGGGATGCAGAGCTaGACACGCCAACACTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: PQVTGKSLGYNILCTSRRPGMQS*TRQHFC Trigger: ACAAAAGTGTTGGCGTGTTCAGCTCTGCATCCCTGG...CCTACGTGATGTACATAGAATATTATAGCCTAAAGATTTTCCAGTTACTTGCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | CCGCAAGTAACTGGAAAATCTTTAGGCTATAATATTCTATGTACATCACGTAGGTTTCCAGCAAACGTATaGTCACCCATGCCCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: PQVTGKSLGYNILCTSRRFPANV*SPMPTG Trigger: TCCTGTGGGCATGGGTGACCATACGTTTGCTGGAAA...CCTACGTGATGTACATAGAATATTATAGCCTAAAGATTTTCCAGTTACTTGCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | AAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGTTCAAACACTTCCACTaGCCTTCGAAGGTTTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: KNHIYFTSSGNRQRSEFKFKHFH*PSKVSG Trigger: ACCAGAAACCTTCGAAGGCCAGTGGAAGTGTTTGAA...CTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | CCGCAAGTAACTGGAAAATCTTTAGGCTATAATATTCTATGTACATCACGTAGGCCAATGAAGTTCATGTaGTGGAAATCATGGTGCCGA | + |
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Preference number: 4 (lower is better) Translates to: PQVTGKSLGYNILCTSRRPMKFM*WKSWCR Trigger: TCGGCACCATGATTTCCACCACATGAACTTCATTGG...CCTACGTGATGTACATAGAATATTATAGCCTAAAGATTTTCCAGTTACTTGCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| 3UTR CAA 72 bp | TTGTACATTAATACTTCCTCCAGTTCCCGAAACCTTTaGGTGAGGTTAGCAATATGGCCTTTAAAACCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LYINTSSSSRNL*VRLAIWPLKPP Trigger: AGGAGGTTTTAAAGGCCATATTGCTAACCTCACCAAAAGGTTTCGGGAACTGGAGGAAGTATTAATGTACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR TCA 90 bp | AAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGCCACAGGAGAATTACGTaGTCACACAAAAGCACAATT | + |
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Preference number: 4 (lower is better) Translates to: KITFISPAPETDREVNSSHRRIT*SHKSTI Trigger: AATTGTGCTTTTGTGTGATCACGTAATTCTCCTGTG...GCTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR TCA 90 bp | AAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGAAAGCACAATTCCGATaGAAAATCCTGTCCCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: KNHIYFTSSGNRQRSEFKKAQFR*KILSQE Trigger: TTCTTGGGACAGGATTTTTCATCGGAATTGTGCTTT...CTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR TCA 90 bp | AAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGAGGCATAATTCCCAATaGAGTTCATGTGGTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: KNHIYFTSSGNRQRSEFKRHNSQ*SSCGGN Trigger: ATTTCCACCACATGAACTTCATTGGGAATTATGCCT...CTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | AAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGAGAACAAGAAATAGATaGCTTCGTGAACTATCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KNHIYFTSSGNRQRSEFKRTRNR*LRELSG Trigger: CCCTGATAGTTCACGAAGCCATCTATTTCTTGTTCT...CTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CCA 90 bp | AAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAGCGCCTTCGAAGGTTTCTaGTTTATCCTTTTGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: KITFISPAPETDREVNSSAFEGF*FILLNL Trigger: AAGATTCAAAAGGATAAACCAGAAACCTTCGAAGGC...GCTTGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS TCA 90 bp | CATGGTGCCGAGCGCCCGTATAAAAAGGAACCAAGTTCAGCGGGTTaGGAGGAATATCATAACCGCTGTGCACATCGATGGTTTCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: HGAERPYKKEPSSAG*EEYHNRCAHRWFPA Trigger: TGCTGGAAACCATCGATGTGCACAGCGGTTATGATATTCCTCTCAACCCGCTGAACTTGGTTCCTTTTTATACGGGCGCTCGGCACCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CAA 90 bp | AGAAAGAATAGTCCTAACCTGGTCAAACCCAGACCAGAGCAGGTTTCAGTCACTTCAGGGAGCCCCAGGTaGCGATCTGGAACTTTGTAT | + |
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Preference number: 5 (lower is better) Translates to: RKNSPNLVKPRPEQVSVTSGSPR*RSGTLY Trigger: ATACAAAGTTCCAGATCGCAACCTGGGGCTCCCTGA...AGTGACTGAAACCTGCTCTGGTCTGGGTTTGACCAGGTTAGGACTATTCTTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS CCA 90 bp | AATCAGGGTTTCCAAGGGATGTGCGTATTCTGCTTCGATTCCAAATaGAGCCTGAAACTCGTGATGGACTTTATGAATGTATTTATAAAT | + |
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Preference number: 5 (lower is better) Translates to: NQGFQGMCVFCFDSK*SLKLVMDFMNVFIN Trigger: ATTTATAAATACATTCATAAAGTCCATCACGAGTTTCAGGCTCCATTTGGAATCGAAGCAGAATACGCACATCCCTTGGAAACCCTGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CAA 90 bp | CCGCAAGTAACTGGAAAATCTTTAGGCTATAATATTCTATGTACATCACGTAGGTTGCGATCTGGAACTTaGTATAGTTGTCCAACATGT | + |
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Preference number: 5 (lower is better) Translates to: PQVTGKSLGYNILCTSRRLRSGT*YSCPTC Trigger: ACATGTTGGACAACTATACAAAGTTCCAGATCGCAA...CCTACGTGATGTACATAGAATATTATAGCCTAAAGATTTTCCAGTTACTTGCGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS-3UTR CAA 90 bp | ACAAAAATCACATTTATTTCACCAGCTCCGGAAACAGACAGAGAAGTGAATTCAAAGTTAAGTACCATCTaGGCATTCTTTCCCAATCAT | + |
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Preference number: 5 (lower is better) Translates to: TKITFISPAPETDREVNSKLSTI*AFFPNH Trigger: ATGATTGGGAAAGAATGCCAAGATGGTACTTAACTT...TGAATTCACTTCTCTGTCTGTTTCCGGAGCTGGTGAAATAAATGTGATTTTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS CCA 72 bp | AACCGCTGTGCACATCGATGGTTTCCAGCAAACGTATaGTCACCCATGCCCACAGGAGAATTACGTGATCAC | + |
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Preference number: 6 (lower is better) Translates to: NRCAHRWFPANV*SPMPTGELRDH Trigger: GTGATCACGTAATTCTCCTGTGGGCATGGGTGACCATACGTTTGCTGGAAACCATCGATGTGCACAGCGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS TCA 72 bp | GAGCGCCCGTATAAAAAGGAACCAAGTTCAGCGGGTTaGGAGGAATATCATAACCGCTGTGCACATCGATGG | + |
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Preference number: 6 (lower is better) Translates to: ERPYKKEPSSAG*EEYHNRCAHRW Trigger: CCATCGATGTGCACAGCGGTTATGATATTCCTCTCAACCCGCTGAACTTGGTTCCTTTTTATACGGGCGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS TCA 72 bp | GGAGTCTGTGCAGGAAATAATGCCAGGTGTCCTCAATaGCTGCACAGCCCAAACACCTTGCCAAAGTTAAGT | + |
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Preference number: 6 (lower is better) Translates to: GVCAGNNARCPQ*LHSPNTLPKLS Trigger: ACTTAACTTTGGCAAGGTGTTTGGGCTGTGCAGTCATTGAGGACACCTGGCATTATTTCCTGCACAGACTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS CCA 72 bp | TTCCAAGGGATGTGCGTATTCTGCTTCGATTCCAAATaGAGCCTGAAACTCGTGATGGACTTTATGAATGTA | + |
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Preference number: 6 (lower is better) Translates to: FQGMCVFCFDSK*SLKLVMDFMNV Trigger: TACATTCATAAAGTCCATCACGAGTTTCAGGCTCCATTTGGAATCGAAGCAGAATACGCACATCCCTTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034015.11 |
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| CDS CAA 72 bp | CTTCCACTGGCCTTCGAAGGTTTCTGGTTTATCCTTTaGAATCTTGTACTTTCTCATGTAAGGTATAAACTG | + |
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Preference number: 6 (lower is better) Translates to: LPLAFEGFWFIL*NLVLSHVRYKL Trigger: CAGTTTATACCTTACATGAGAAAGTACAAGATTCAAAAGGATAAACCAGAAACCTTCGAAGGCCAGTGGAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034015.11 ENSMUST00000147419.2 |
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