Pregenerated sensors for MSMB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021907Ensembl transcript IDs: ENSMUST00000022464.14
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCTTCTGAGTGCTGGGATTACAGGTCACCTCCTTGCAAGCTTATaGTTGGTAAATTTAAATCATACAAGGTTCAAATGTTACTCCACT | + |
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Preference number: 1 (lower is better) Translates to: CLLSAGITGHLLASL*LVNLNHTRFKCYST Trigger: AGTGGAGTAACATTTGAACCTTGTATGATTTAAATTTACCAATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCAGCACTCAGAAGGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| 3UTR CCA 72 bp | GTTTTTCAAGATATGCTGCCTCTGCCTTCTGAGTGCTaGGATTACAGGTCACCTCCTTGCAAGCTTATGATT | + |
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Preference number: 3 (lower is better) Translates to: VFQDMLPLPSEC*DYRSPPCKLMI Trigger: AATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCAGCACTCAGAAGGCAGAGGCAGCATATCTTGAAAAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR GCA 90 bp | CCTCTGCCTTCTGAGTGCTGGGATTACAGGTCACCTCCTTGCAAGCTTATGATTTTCAATAGAACATACTaGTTTGGATGCTATCACCAT | + |
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Preference number: 4 (lower is better) Translates to: PLPSECWDYRSPPCKLMIFNRTY*FGCYHH Trigger: ATGGTGATAGCATCCAAAGCAGTATGTTCTATTGAA...AATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCAGCACTCAGAAGGCAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR CCA 90 bp | AATTTAAATCATACAAGGTTCAAATGTTACTCCACTTTTGGGCCCACACGAAGCGTAGGTGCAGTTCTCTaGGTGGAATTGTACATCACA | + |
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Preference number: 4 (lower is better) Translates to: NLNHTRFKCYSTFGPTRSVGAVL*VELYIT Trigger: TGTGATGTACAATTCCACCCAGAGAACTGCACCTAC...GCTTCGTGTGGGCCCAAAAGTGGAGTAACATTTGAACCTTGTATGATTTAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR GCA 90 bp | TGGGATTACAGGTCACCTCCTTGCAAGCTTATGATTGGTAAATTTAAATCATACGGAGTGTTAAGGAAATaGTTGTTACCATCAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: WDYRSPPCKLMIGKFKSYGVLRK*LLPSAS Trigger: GGATGCTGATGGTAACAAGCATTTCCTTAACACTCC...GTATGATTTAAATTTACCAATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR TCA 90 bp | GTAAATTTAAATCATACAAGGTTCAAATGTTACTCCACTTTTGGGCCCACACGACAGTCATCAGACATTTaGTTTGGAAATATCTCACGA | + |
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Preference number: 4 (lower is better) Translates to: VNLNHTRFKCYSTFGPTRQSSDI*FGNISR Trigger: TCGTGAGATATTTCCAAATCAAATGTCTGATGACTG...TCGTGTGGGCCCAAAAGTGGAGTAACATTTGAACCTTGTATGATTTAAATTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS GCA 90 bp | CTCGACAGGTCTTCCCTGGGTTCTTCCGATCCACCACACTGTAGGTaGAGTTCTCTGGGTGGAATTGTACATCACAGTTGTCTTTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: LDRSSLGSSDPPHCR*SSLGGIVHHSCLCH Trigger: ATGACAAAGACAACTGTGATGTACAATTCCACCCAGAGAACTGCACCTACAGTGTGGTGGATCGGAAGAACCCAGGGAAGACCTGTCGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CCA 90 bp | CTTCCCTGGGTTCTTCCGATCCACCACACTGTAGGTGCAGTTCTCTaGGTGGAATTGTACATCACAGTTGTCTTTGTCATAGCTCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: LPWVLPIHHTVGAVL*VELYITVVFVIAQR Trigger: CCTTTGAGCTATGACAAAGACAACTGTGATGTACAATTCCACCCAGAGAACTGCACCTACAGTGTGGTGGATCGGAAGAACCCAGGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR CAA 90 bp | CTGCCTTCTGAGTGCTGGGATTACAGGTCACCTCCTTGCAAGCTTATGATTGGTGCAGTCATCAGACATTaGATTTGGAAATATCTCACG | + |
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Preference number: 5 (lower is better) Translates to: LPSECWDYRSPPCKLMIGAVIRH*IWKYLT Trigger: CGTGAGATATTTCCAAATCAAATGTCTGATGACTGC...ACCAATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCAGCACTCAGAAGGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR CAA 90 bp | GGTAAATTTAAATCATACAAGGTTCAAATGTTACTCCACTTTTGGGCCCACACGGTGTTAAGGAAATGCTaGTTACCATCAGCATCCATG | + |
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Preference number: 5 (lower is better) Translates to: GKFKSYKVQMLLHFWAHTVLRKC*LPSASM Trigger: CATGGATGCTGATGGTAACAAGCATTTCCTTAACAC...CGTGTGGGCCCAAAAGTGGAGTAACATTTGAACCTTGTATGATTTAAATTTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CCA 90 bp | ATGCTTGTTACCATCAGCATCCATGCAGTCATCAGACATTTGATTTaGAAATATCTCACGATTTTCAATAGAACATACTGCTTTGGATGC | + |
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Preference number: 5 (lower is better) Translates to: MLVTISIHAVIRHLI*KYLTIFNRTYCFGC Trigger: GCATCCAAAGCAGTATGTTCTATTGAAAATCGTGAGATATTTCCAAATCAAATGTCTGATGACTGCATGGATGCTGATGGTAACAAGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS-3UTR CAA 90 bp | TGGGATTACAGGTCACCTCCTTGCAAGCTTATGATTGGTAAATTTAAATCATACATAGAACATACTGCTTaGGATGCTATCACCATGGTA | + |
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Preference number: 5 (lower is better) Translates to: WDYRSPPCKLMIGKFKSYIEHTA*DAITMV Trigger: TACCATGGTGATAGCATCCAAAGCAGTATGTTCTAT...GTATGATTTAAATTTACCAATCATAAGCTTGCAAGGAGGTGACCTGTAATCCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS TCA 90 bp | AGGAAATGCTTGTTACCATCAGCATCCATGCAGTCATCAGACATTTaGTTTGGAAATATCTCACGATTTTCAATAGAACATACTGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: RKCLLPSASMQSSDI*FGNISRFSIEHTAL Trigger: CAAAGCAGTATGTTCTATTGAAAATCGTGAGATATTTCCAAATCAAATGTCTGATGACTGCATGGATGCTGATGGTAACAAGCATTTCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CAA 90 bp | GTTCTTCCGATCCACCACACTGTAGGTGCAGTTCTCTGGGTGGAATaGTACATCACAGTTGTCTTTGTCATAGCTCAAAGGCCTAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: VLPIHHTVGAVLWVE*YITVVFVIAQRPSS Trigger: GCTACTAGGCCTTTGAGCTATGACAAAGACAACTGTGATGTACAATTCCACCCAGAGAACTGCACCTACAGTGTGGTGGATCGGAAGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS GCA 72 bp | CACGTGCAGTTCTTCTTCCAGGGAGTGTTAAGGAAATaGTTGTTACCATCAGCATCCATGCAGTCATCAGAC | + |
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Preference number: 6 (lower is better) Translates to: HVQFFFQGVLRK*LLPSASMQSSD Trigger: GTCTGATGACTGCATGGATGCTGATGGTAACAAGCATTTCCTTAACACTCCCTGGAAGAAGAACTGCACGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CAA 72 bp | ATCCACCACACTGTAGGTGCAGTTCTCTGGGTGGAATaGTACATCACAGTTGTCTTTGTCATAGCTCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: IHHTVGAVLWVE*YITVVFVIAQR Trigger: CCTTTGAGCTATGACAAAGACAACTGTGATGTACAATTCCACCCAGAGAACTGCACCTACAGTGTGGTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CAA 72 bp | GTGCAGTTCTTCTTCCAGGGAGTGTTAAGGAAATGCTaGTTACCATCAGCATCCATGCAGTCATCAGACATT | + |
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Preference number: 6 (lower is better) Translates to: VQFFFQGVLRKC*LPSASMQSSDI Trigger: AATGTCTGATGACTGCATGGATGCTGATGGTAACAAGCATTTCCTTAACACTCCCTGGAAGAAGAACTGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CAA 90 bp | AAGGAAATGCTTGTTACCATCAGCATCCATGCAGTCATCAGACATTaGATTTGGAAATATCTCACGATTTTCAATAGAACATACTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: KEMLVTISIHAVIRH*IWKYLTIFNRTYCF Trigger: AAAGCAGTATGTTCTATTGAAAATCGTGAGATATTTCCAAATCAAATGTCTGATGACTGCATGGATGCTGATGGTAACAAGCATTTCCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS CAA 72 bp | CTTGTTACCATCAGCATCCATGCAGTCATCAGACATTaGATTTGGAAATATCTCACGATTTTCAATAGAACA | + |
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Preference number: 6 (lower is better) Translates to: LVTISIHAVIRH*IWKYLTIFNRT Trigger: TGTTCTATTGAAAATCGTGAGATATTTCCAAATCAAATGTCTGATGACTGCATGGATGCTGATGGTAACAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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| CDS TCA 72 bp | TTGTTACCATCAGCATCCATGCAGTCATCAGACATTTaGTTTGGAAATATCTCACGATTTTCAATAGAACAT | + |
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Preference number: 6 (lower is better) Translates to: LLPSASMQSSDI*FGNISRFSIEH Trigger: ATGTTCTATTGAAAATCGTGAGATATTTCCAAATCAAATGTCTGATGACTGCATGGATGCTGATGGTAACAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022464.14 |
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