Pregenerated sensors for MSL3L2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047669Ensembl transcript IDs: ENSMUST00000063138.8
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAATATTCCGCCAACCTAGAACACTaGACACAAAGCCAGGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: ACVMSTRRAEPMYSLEYSANLEH*TQSQVE Trigger: CTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGC...GGAATATTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| 3UTR-3UTR TCA 90 bp | CAGATTGCCATGTGTCCAAATATGAACTCATATATTCTGAACAGAGTCCTCCAAAATAACTGCAGTATGTaGGGAACTCAAATATCCAAG | + |
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Preference number: 2 (lower is better) Translates to: QIAMCPNMNSYILNRVLQNNCSM*GTQISK Trigger: CTTGGATATTTGAGTTCCTCACATACTGCAGTTATT...TTGGAGGACTCTGTTCAGAATATATGAGTTCATATTTGGACACATGGCAATCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| 3UTR TCA 72 bp | GTCCCCTCTCCCCCAAGGTGGGCCAACCTAGAACACTaGACACAAAGCCAGGTGGAGCAGCTATGCTTACAG | + |
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Preference number: 3 (lower is better) Translates to: VPSPPRWANLEH*TQSQVEQLCLQ Trigger: CTGTAAGCATAGCTGCTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGCCCACCTTGGGGGAGAGGGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| 3UTR GCA 72 bp | GGAATATTCCCTCTGAACATAGGAGAGGCTGCTTCCTaGTGTCACACGCAGCCTGTGCAATGGCATGTATTT | + |
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Preference number: 3 (lower is better) Translates to: GIFPLNIGEAAS*CHTQPVQWHVF Trigger: AAATACATGCCATTGCACAGGCTGCGTGTGACAGCAGGAAGCAGCCTCTCCTATGTTCAGAGGGAATATTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| 3UTR GCA 72 bp | ATAGTTTGGAATATTCCCTCTGAACATAGGAGAGGCTaGTTCCTGCTGTCACACGCAGCCTGTGCAATGGCA | + |
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Preference number: 3 (lower is better) Translates to: IVWNIPSEHRRG*FLLSHAACAMA Trigger: TGCCATTGCACAGGCTGCGTGTGACAGCAGGAAGCAGCCTCTCCTATGTTCAGAGGGAATATTCCAAACTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CCA 90 bp | CAGTATGTGAGGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCGGCCAGGGCGCCTCCTaGCTCCTGCCAGCATCGCTG | + |
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Preference number: 4 (lower is better) Translates to: QYVRNSNIQACPLSPKVGGQGAS*LLPASL Trigger: CAGCGATGCTGGCAGGAGCCAGGAGGCGCCCTGGCC...GCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCCTCACATACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | GGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCCAACCTAGAACTTCCGGGATGGGGATaGGCATGGCCCGCTCGTCCG | + |
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Preference number: 4 (lower is better) Translates to: GTQISKPVPSPPRWANLELPGWG*AWPARP Trigger: CGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAG...TTCTAGGTTGGCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | CAGTATGTGAGGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCGCCAGTGGCAGTGGGTaGTGTGGCGGGTGGATCGCC | + |
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Preference number: 4 (lower is better) Translates to: QYVRNSNIQACPLSPKVGASGSG*CGGWIA Trigger: GGCGATCCACCCGCCACAGCACCCACTGCCACTGGC...GCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCCTCACATACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | CCCAAGGTGGGCCAACCTAGAACACTGAACACAAAGCCAGGTGGAGCAGCTATGACAGCTTGGGCACACTaGGCTTGGCCTGGGGCGAGG | + |
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Preference number: 4 (lower is better) Translates to: PKVGQPRTLNTKPGGAAMTAWAH*AWPGAR Trigger: CCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGT...CATAGCTGCTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGCCCACCTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | CAGTATGTGAGGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCGATGGGGGACGGTGCTaGGCTGTGCACAGGTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QYVRNSNIQACPLSPKVGDGGRC*AVHRCL Trigger: AAGACACCTGTGCACAGCGCAGCACCGTCCCCCATC...GCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCCTCACATACTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | GTGGGCCAACCTAGAACACTGAACACAAAGCCAGGTGGAGCAGCTATGCTTACAACCGTCATCCTTAGGTaGGCAGCCGAGGGTGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: VGQPRTLNTKPGGAAMLTTVILR*AAEGGH Trigger: ATGGCCACCCTCGGCTGCGCACCTAAGGATGACGGT...TGTAAGCATAGCTGCTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGCCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CCA 90 bp | GAAGAGCAGAACCTATGTATAGTTTGGAATATTCCCTCTGAACATAGGAGAGGCCTGCCCTGCGCCTCTTaGGGGCAGCTGGCCCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: EEQNLCIVWNIPSEHRRGLPCAS*GQLAPP Trigger: TGGCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAG...GCCTCTCCTATGTTCAGAGGGAATATTCCAAACTATACATAGGTTCTGCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | GAAGAGCAGAACCTATGTATAGTTTGGAATATTCCCTCTGAACATAGGAGAGGCCCTCGGCCTCTGCCCTaGGCCTCTTGGGGGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: EEQNLCIVWNIPSEHRRGPRPLP*ASWGQL Trigger: CAGCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGG...GCCTCTCCTATGTTCAGAGGGAATATTCCAAACTATACATAGGTTCTGCTCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR TCA 90 bp | GGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCCAACCTAGAAAAAAGGTGGAGGAGGTaGCCATTTCGTACTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: GTQISKPVPSPPRWANLEKRWRR*PFRTEP Trigger: AGGCTCAGTACGAAATGGTCACCTCCTCCACCTTTT...TTCTAGGTTGGCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCC 53% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | TTAACAGCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAAGCCCGGTCCTCAGCCTaGCAGTGGCAGTGGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LTACVMSTRRAEPMYSLEARSSA*QWQWVL Trigger: CAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGC...TTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGCTGTTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CCA 90 bp | CAACTTTACCTCCCTACAGGCAAGGCAACAAAACAAAGCAAGGAAGTAATTGGTTGGCAGTGGGTGCTGTaGCGGGTGGATCGCCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: QLYLPTGKATKQSKEVIGWQWVL*RVDRLG Trigger: TCCCAGGCGATCCACCCGCCACAGCACCCACTGCCA...ACCAATTACTTCCTTGCTTTGTTTTGTTGCCTTGCCTGTAGGGAGGTAAAGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CCA 90 bp | ACAGCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAATATTCCTCAGCCTGCCAGTaGCAGTGGGTGCTGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: TACVMSTRRAEPMYSLEYSSACQ*QWVLWR Trigger: CCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGA...ATATTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | TGCTTGATGCTAAGAAAACTAAACACCGTAATTCTTGTTAACAGCCTGTGTGATGCGCCTCCTGGCTCCTaGCAGCATCGCTGGCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: CLMLRKLNTVILVNSLCDAPPGS*QHRWLA Trigger: AGCGAGCCAGCGATGCTGGCAGGAGCCAGGAGGCGC...ATCACACAGGCTGTTAACAAGAATTACGGTGTTTAGTTTTCTTAGCATCAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | TTAACAGCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAATGGCACTCCCTTCCTTaGCAGGAGTCAGAGCGATGG | + |
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Preference number: 4 (lower is better) Translates to: LTACVMSTRRAEPMYSLEWHSLP*QESERW Trigger: CCATCGCTCTGACTCCTGGCAAGGAAGGGAGTGCCA...TTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGCTGTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CCA 90 bp | CAACTTTACCTCCCTACAGGCAAGGCAACAAAACAAAGCAAGGAAGTAATTGGTTGGCTCGCTCCTCAGTaGGGAAGAAAAAGGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QLYLPTGKATKQSKEVIGWLAPQ*GRKRWR Trigger: CCTCCACCTTTTTCTTCCCCACTGAGGAGCGAGCCA...ACCAATTACTTCCTTGCTTTGTTTTGTTGCCTTGCCTGTAGGGAGGTAAAGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | TTAACAGCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAAGGTGTCTTTTGCAAGTaGGGGAACAGCTTGGGCACA | + |
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Preference number: 4 (lower is better) Translates to: LTACVMSTRRAEPMYSLEGVFCK*GNSLGT Trigger: TGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACC...TTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGCTGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR GCA 90 bp | TTAACAGCCTGTGTGATGTCTACCAGAAGAGCAGAACCTATGTATAGTTTGGAATGCACAGGTGTCTTTTaGAAGTGCGGGAACAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: LTACVMSTRRAEPMYSLECTGVF*KCGNSL Trigger: CAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCA...TTCCAAACTATACATAGGTTCTGCTCTTCTGGTAGACATCACACAGGCTGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| 3UTR CAA 72 bp | AGGCAAGGCAACAAAACAAAGCAAGGAAGTAATTGGTaGTTAACAAAAATAACTGCAGTATGTGAGGAACTC | + |
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Preference number: 4 (lower is better) Translates to: RQGNKTKQGSNW*LTKITAVCEEL Trigger: GAGTTCCTCACATACTGCAGTTATTTTTGTTAACAACCAATTACTTCCTTGCTTTGTTTTGTTGCCTTGCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | GCCATCTCCCGGCACAGGCCCACGCTCCTCTCGGGCGCAGCGCGCTaGGGCTGCGGCCGGCGGTCCCCCAAGGCCAGCACGCTCGCCGAG | + |
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Preference number: 5 (lower is better) Translates to: AISRHRPTLLSGAAR*GCGRRSPKASTLAE Trigger: CTCGGCGAGCGTGCTGGCCTTGGGGGACCGCCGGCCGCAGCCCCAGCGCGCTGCGCCCGAGAGGAGCGTGGGCCTGTGCCGGGAGATGGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 90 bp | TCCCGGCACAGGCCCACGCTCCTCTCGGGCGCAGCGCGCTGGGGCTaGGGCCGGCGGTCCCCCAAGGCCAGCACGCTCGCCGAGAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SRHRPTLLSGAARWG*GRRSPKASTLAEKW Trigger: CCACTTCTCGGCGAGCGTGCTGGCCTTGGGGGACCGCCGGCCGCAGCCCCAGCGCGCTGCGCCCGAGAGGAGCGTGGGCCTGTGCCGGGA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 90 bp | GTGGCAGTGGGTGCTGTGGCGGGTGGATCGCCTGGGAGCCCGCGTTaGCTCGGCCTCTGCCCTGCGCCTCTTGGGGGCAGCTGGCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: VAVGAVAGGSPGSPR*LGLCPAPLGGSWPR Trigger: GCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACCCACTGCCAC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | TGGGGCGAGGCCCGGTCCTCAGCCTGCCAGTGGCAGTGGGTGCTGTaGCGGGTGGATCGCCTGGGAGCCCGCGTTGCCTCGGCCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: WGEARSSACQWQWVL*RVDRLGARVASASA Trigger: GGCAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | CTCTCCGAGGGCTGCGGGGGCGACGGGCCCGGCCAGGGCGCCTCCTaGCTCCTGCCAGCATCGCTGGCTCGCTCCTCAGTGGGGAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: LSEGCGGDGPGQGAS*LLPASLARSSVGKK Trigger: TTTCTTCCCCACTGAGGAGCGAGCCAGCGATGCTGGCAGGAGCCAGGAGGCGCCCTGGCCGGGCCCGTCGCCCCCGCAGCCCTCGGAGAG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | ACACTGCGCTTGGCCTGGGGCGAGGCCCGGTCCTCAGCCTGCCAGTaGCAGTGGGTGCTGTGGCGGGTGGATCGCCTGGGAGCCCGCGTT | + |
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Preference number: 5 (lower is better) Translates to: TLRLAWGEARSSACQ*QWVLWRVDRLGARV Trigger: AACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 90 bp | AACAGTCGTCCGCCAGCCGCTGCTGGAGCACTTCCGGGATGGGGATaGGCATGGCCCGCTCGTCCGCTTCCCGTCTTGTGTGGGGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: NSRPPAAAGALPGWG*AWPARPLPVLCGVP Trigger: TGGAACCCCACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGGACGACTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | CGTCCGCCAGCCGCTGCTGGAGCACTTCCGGGATGGGGATGCGCATaGCCCGCTCGTCCGCTTCCCGTCTTGTGTGGGGTTCCACTTCTT | + |
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Preference number: 5 (lower is better) Translates to: RPPAAAGALPGWGCA*PARPLPVLCGVPLL Trigger: AAGAAGTGGAACCCCACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGGACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | CAGGTGTCTTTTGCAAGTGCGGGAACAGCTTGGGCACACTGCGCTTaGCCTGGGGCGAGGCCCGGTCCTCAGCCTGCCAGTGGCAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: QVSFASAGTAWAHCA*PGARPGPQPASGSG Trigger: CCCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | TGTAGTAACAGTCGTCCGCCAGCCGCTGCTGGAGCACTTCCGGGATaGGGATGCGCATGGCCCGCTCGTCCGCTTCCCGTCTTGTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: CSNSRPPAAAGALPG*GCAWPARPLPVLCG Trigger: CCCACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGGACGACTGTTACTACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | GTGCTGCGCTGTGCACAGGTGTCTTTTGCAAGTGCGGGAACAGCTTaGGCACACTGCGCTTGGCCTGGGGCGAGGCCCGGTCCTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: VLRCAQVSFASAGTA*AHCAWPGARPGPQP Trigger: AGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAGCGCAGCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | CCCAAGGTGGGCCAACCTAGAACACTGAACACAAAGCCAGGTGGAGCAGCTATGTCTGCCCTGCGCCTCTaGGGGGCAGCTGGCCCCGCC | + |
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Preference number: 5 (lower is better) Translates to: PKVGQPRTLNTKPGGAAMSALRL*GAAGPA Trigger: GGCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAGA...CATAGCTGCTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGCCCACCTTGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | CAGTATGTGAGGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCGCCTGGGAGCCCGCGTaGCCTCGGCCTCTGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: QYVRNSNIQACPLSPKVGAWEPA*PRPLPC Trigger: GCAGGGCAGAGGCCGAGGCAACGCGGGCTCCCAGGC...GCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCCTCACATACTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS TCA 90 bp | CCACATTGGTCTGGCAAGGCAGCCTCACCAACCGCCGCCTGCGGTTaGTGTAGTAACAGTCGTCCGCCAGCCGCTGCTGGAGCACTTCCG | + |
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Preference number: 5 (lower is better) Translates to: PHWSGKAASPTAACG*CSNSRPPAAAGALP Trigger: CGGAAGTGCTCCAGCAGCGGCTGGCGGACGACTGTTACTACATCAACCGCAGGCGGCGGTTGGTGAGGCTGCCTTGCCAGACCAATGTGG 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 90 bp | GGGATGGGGATGCGCATGGCCCGCTCGTCCGCTTCCCGTCTTGTGTaGGGTTCCACTTCTTTCTTGCCTTTAGGCTTTGAGTCGCCATCA | + |
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Preference number: 5 (lower is better) Translates to: GMGMRMARSSASRLV*GSTSFLPLGFESPS Trigger: TGATGGCGACTCAAAGCCTAAAGGCAAGAAAGAAGTGGAACCCCACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | CCCAAGGTGGGCCAACCTAGAACACTGAACACAAAGCCAGGTGGAGCAGCTATGAGGATGGCGCCCACATaGGTCTGGCAAGGCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: PKVGQPRTLNTKPGGAAMRMAPT*VWQGSL Trigger: GAGGCTGCCTTGCCAGACCAATGTGGGCGCCATCCT...CATAGCTGCTCCACCTGGCTTTGTGTTCAGTGTTCTAGGTTGGCCCACCTTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS TCA 90 bp | CATCGCTGGCTCGCTCCTCAGTGGGGAAGAAAAAGGTGGAGGAGGTaGCCATTTCGTACTGAGCCTGTTCCTGAGGGTAGAGCAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: HRWLAPQWGRKRWRR*PFRTEPVPEGRAAP Trigger: TGGTGCTGCTCTACCCTCAGGAACAGGCTCAGTACGAAATGGTCACCTCCTCCACCTTTTTCTTCCCCACTGAGGAGCGAGCCAGCGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | GGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCCAACCTAGAAATGGCACTCCCTTCCTaGCCAGGAGTCAGAGCGATG | + |
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Preference number: 5 (lower is better) Translates to: GTQISKPVPSPPRWANLEMALPS*PGVRAM Trigger: CATCGCTCTGACTCCTGGCAAGGAAGGGAGTGCCAT...TTCTAGGTTGGCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | CAGTATGTGAGGAACTCAAATATCCAAGCCTGTCCCCTCTCCCCCAAGGTGGGCGTGCACAGGTGTCTTTaGCAAGTGCGGGAACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: QYVRNSNIQACPLSPKVGVHRCL*QVREQL Trigger: AAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCAC...GCCCACCTTGGGGGAGAGGGGACAGGCTTGGATATTTGAGTTCCTCACATACTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS TCA 90 bp | TTCCCGTCTTGTGTGGGGTTCCACTTCTTTCTTGCCTTTAGGCTTTaGGTCGCCATCACCTCGATCACTCCCTCCTTCATCCTTCCCCTC | + |
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Preference number: 5 (lower is better) Translates to: FPSCVGFHFFLAFRL*VAITSITPSFILPL Trigger: GAGGGGAAGGATGAAGGAGGGAGTGATCGAGGTGATGGCGACTCAAAGCCTAAAGGCAAGAAAGAAGTGGAACCCCACACAAGACGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS-3UTR CAA 90 bp | GAAGAGCAGAACCTATGTATAGTTTGGAATATTCCCTCTGAACATAGGAGAGGCGGTTCCACTTCTTTCTaGCCTTTAGGCTTTGAGTCG | + |
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Preference number: 5 (lower is better) Translates to: EEQNLCIVWNIPSEHRRGGSTSF*PLGFES Trigger: CGACTCAAAGCCTAAAGGCAAGAAAGAAGTGGAACC...GCCTCTCCTATGTTCAGAGGGAATATTCCAAACTATACATAGGTTCTGCTCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | GGCTGCGGGGGCGACGGGCCCGGCCAGGGCGCCTCCTaGCTCCTGCCAGCATCGCTGGCTCGCTCCTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GCGGDGPGQGAS*LLPASLARSSV Trigger: CACTGAGGAGCGAGCCAGCGATGCTGGCAGGAGCCAGGAGGCGCCCTGGCCGGGCCCGTCGCCCCCGCAGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | TGCCTCGGCCTCTGCCCTGCGCCTCTTGGGGGCAGCTaGCCCCGCCACGGCCTGGCTCTCCGAGGGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: CLGLCPAPLGGS*PRHGLALRGLR Trigger: CCGCAGCCCTCGGAGAGCCAGGCCGTGGCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGGCA 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CAA 90 bp | GATCGCCTGGGAGCCCGCGTTGCCTCGGCCTCTGCCCTGCGCCTCTaGGGGGCAGCTGGCCCCGCCACGGCCTGGCTCTCCGAGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: DRLGARVASASALRL*GAAGPATAWLSEGC Trigger: GCAGCCCTCGGAGAGCCAGGCCGTGGCGGGGCCAGCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 72 bp | GGTGCTGTGGCGGGTGGATCGCCTGGGAGCCCGCGTTaGCTCGGCCTCTGCCCTGCGCCTCTTGGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GAVAGGSPGSPR*LGLCPAPLGGS Trigger: GCTGCCCCCAAGAGGCGCAGGGCAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 72 bp | CTGCGCTTGGCCTGGGGCGAGGCCCGGTCCTCAGCCTaGCAGTGGCAGTGGGTGCTGTGGCGGGTGGATCGC | + |
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Preference number: 6 (lower is better) Translates to: LRLAWGEARSSA*QWQWVLWRVDR Trigger: GCGATCCACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | GCCCGGTCCTCAGCCTGCCAGTGGCAGTGGGTGCTGTaGCGGGTGGATCGCCTGGGAGCCCGCGTTGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: ARSSACQWQWVL*RVDRLGARVAS Trigger: CGAGGCAACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGGACCGGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | CCTCAGCCTGCCAGTGGCAGTGGGTGCTGTGGCGGGTaGATCGCCTGGGAGCCCGCGTTGCCTCGGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PQPASGSGCCGG*IAWEPALPRPL Trigger: CAGAGGCCGAGGCAACGCGGGCTCCCAGGCGATCCACCCGCCACAGCACCCACTGCCACTGGCAGGCTGAGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | AGTCGTCCGCCAGCCGCTGCTGGAGCACTTCCGGGATaGGGATGCGCATGGCCCGCTCGTCCGCTTCCCGTC | + |
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Preference number: 6 (lower is better) Translates to: SRPPAAAGALPG*GCAWPARPLPV Trigger: GACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGGACGACT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 72 bp | CCGCCAGCCGCTGCTGGAGCACTTCCGGGATGGGGATaGGCATGGCCCGCTCGTCCGCTTCCCGTCTTGTGT | + |
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Preference number: 6 (lower is better) Translates to: PPAAAGALPGWG*AWPARPLPVLC Trigger: ACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCATCCCCATCCCGGAAGTGCTCCAGCAGCGGCTGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | AAGTGCGGGAACAGCTTGGGCACACTGCGCTTGGCCTaGGGCGAGGCCCGGTCCTCAGCCTGCCAGTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: KCGNSLGTLRLA*GEARSSACQWQ Trigger: CTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | CCGGCCAGGGCGCCTCCTGGCTCCTGCCAGCATCGCTaGCTCGCTCCTCAGTGGGGAAGAAAAAGGTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PARAPPGSCQHR*LAPQWGRKRWR Trigger: CCTCCACCTTTTTCTTCCCCACTGAGGAGCGAGCCAGCGATGCTGGCAGGAGCCAGGAGGCGCCCTGGCCGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CAA 90 bp | GGTGCTGCGCTGTGCACAGGTGTCTTTTGCAAGTGCGGGAACAGCTaGGGCACACTGCGCTTGGCCTGGGGCGAGGCCCGGTCCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GAALCTGVFCKCGNS*GTLRLAWGEARSSA Trigger: GGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAGCGCAGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | TTTGCAAGTGCGGGAACAGCTTGGGCACACTGCGCTTaGCCTGGGGCGAGGCCCGGTCCTCAGCCTGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: FASAGTAWAHCA*PGARPGPQPAS Trigger: ACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CAA 72 bp | TTTTGCAAGTGCGGGAACAGCTTGGGCACACTGCGCTaGGCCTGGGGCGAGGCCCGGTCCTCAGCCTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FCKCGNSLGTLR*AWGEARSSACQ Trigger: CTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CAA 90 bp | ACAGGTGTCTTTTGCAAGTGCGGGAACAGCTTGGGCACACTGCGCTaGGCCTGGGGCGAGGCCCGGTCCTCAGCCTGCCAGTGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: TGVFCKCGNSLGTLR*AWGEARSSACQWQW Trigger: CCACTGCCACTGGCAGGCTGAGGACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | AGTGGCGCACGTAGCACTCAAGGATGGCGCCCACATTaGTCTGGCAAGGCAGCCTCACCAACCGCCGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SGARSTQGWRPH*SGKAASPTAAC Trigger: GCAGGCGGCGGTTGGTGAGGCTGCCTTGCCAGACCAATGTGGGCGCCATCCTTGAGTGCTACGTGCGCCACT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CAA 72 bp | CTGTGCACAGGTGTCTTTTGCAAGTGCGGGAACAGCTaGGGCACACTGCGCTTGGCCTGGGGCGAGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: LCTGVFCKCGNS*GTLRLAWGEAR Trigger: CCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS TCA 72 bp | TCTGGCAAGGCAGCCTCACCAACCGCCGCCTGCGGTTaGTGTAGTAACAGTCGTCCGCCAGCCGCTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SGKAASPTAACG*CSNSRPPAAAG Trigger: TCCAGCAGCGGCTGGCGGACGACTGTTACTACATCAACCGCAGGCGGCGGTTGGTGAGGCTGCCTTGCCAGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | TGTGCACAGGTGTCTTTTGCAAGTGCGGGAACAGCTTaGGCACACTGCGCTTGGCCTGGGGCGAGGCCCGGT | + |
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Preference number: 6 (lower is better) Translates to: CAQVSFASAGTA*AHCAWPGARPG Trigger: ACCGGGCCTCGCCCCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 72 bp | GACGGTGCTGCGCTGTGCACAGGTGTCTTTTGCAAGTaGGGGAACAGCTTGGGCACACTGCGCTTGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: DGAALCTGVFCK*GNSLGTLRLAW Trigger: CCAGGCCAAGCGCAGTGTGCCCAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAGCGCAGCACCGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS GCA 72 bp | CCAGGAGTCAGAGCGATGGGGGACGGTGCTGCGCTGTaGACAGGTGTCTTTTGCAAGTGCGGGAACAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PGVRAMGDGAAL*TGVFCKCGNSL Trigger: CAAGCTGTTCCCGCACTTGCAAAAGACACCTGTGCACAGCGCAGCACCGTCCCCCATCGCTCTGACTCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS CCA 72 bp | ATGCGCATGGCCCGCTCGTCCGCTTCCCGTCTTGTGTaGGGTTCCACTTCTTTCTTGCCTTTAGGCTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: MRMARSSASRLV*GSTSFLPLGFE Trigger: CTCAAAGCCTAAAGGCAAGAAAGAAGTGGAACCCCACACAAGACGGGAAGCGGACGAGCGGGCCATGCGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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| CDS TCA 72 bp | CTCGCTCCTCAGTGGGGAAGAAAAAGGTGGAGGAGGTaGCCATTTCGTACTGAGCCTGTTCCTGAGGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: LAPQWGRKRWRR*PFRTEPVPEGR Trigger: TCTACCCTCAGGAACAGGCTCAGTACGAAATGGTCACCTCCTCCACCTTTTTCTTCCCCACTGAGGAGCGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063138.8 |
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